Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033654_T028
CDS Infomation

cds chromosome:B73_RefGen_v4:1:269766452:269771428:-1 gene:Zm00001d033654 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm10 description: opaque endosperm10
Sequence

ATGCCAAACTATGTTGTTGGAGGTATTCGTAGAAATCTGGAGCAGACACAGTACAGCTCA
TCCAGTTCAAGTGGATACAGTCCATGTGCCCGTTCTAAAGTACTACAGCAACAGATAATA
TTTGGAGGGCAGAATGACCAGCACGAGGACACACATTATGACTCTGATGAAGCAGAAAGC
AAACTCTCTCTTCTAGAACCTGAGGACTCAGTTAATGAAGATAATTTTGCGGCTGTGCTT
TCACAATTTAACGATGCCCACAACAAAGGAAGTGAAGGCTATGGAGAAAGTGGATGTGGC
AAGCATGGAGAAAAATCTCTAGCTGAATCAGTGGGATCACTTAACATTGGCATTATTGAT
TTTGAGTTCATGGATTCAACTCCTCTAATTCATGATAAAGAATCATGTTCTCTCCTAGAA
CCTGAGGACTCAGTTAATGAAGATAATTTTGCAGCTGTTCTTTCAAAATTTAATGATGCT
CCCAACAAAGAAAGCAAAGGCTATGGAGAAAGTGGACGTGGCAAGCATGGAGAAAAATCT
CTAGCTGAATCAGTGGGATCACTTAACATTGGCATTGTTGACTCTGAGTTCATGGATTCA
AGTCCTCTAATTCATGATAAAGAATCATGTTCTCCTCTAGAACCTGAGGGCTCCGTTAAT
GAAGATAATTTTACAGCTGTGCTTTCACAGTTTAACGATGCCCCCAACAAAGAAAGTGAA
GGCTATGGAGAAAGTGGATGTGGTAAGCATGGAGAAAAATCTCTAGTTGAATCAGTGGGA
TCACTTAACATTGGCATTGTTGATTCTGAGTTCATGGATTCAAGTCCTCTAATTCATGAT
AAAGAATCATGTTCTCCTCTAGAACCTGAGGACTCAGTTAATGAAGATAATTTTGCAGCT
GTGCTTTCACAATTTAATGATGCCCCCAACAAAGAAAGCGAAGGCTATGGAGAAAGTGGA
CGTGGCAAGCATGGAGAAAAATCTCTAGCTGAATCAGTGGGATCACTTAACATTGGCATT
ATTGATTCTGAGTTCATGGATTCAAGTCCTCTAATTCATGATAAAGAATCATGTTTTCCT
CTAGAACCTGAGGGCTCCGTTAATGAAGATAATTTTACAGCTGTGCTTTCACAATTTAAC
GATGCCCCCAACAAAGAAAGTGAAGGCTATGGAGAAAGTGGATGTGGTAAGCATGGAGAA
AAATCTCTAGTTGAATCAGTGGGATCACTTAACATTGGCATTGTTGATTCTGAGTTCATG
GATTCAAGTCCTCTAATTCATGATAAAGAATCATGTTCTCCTCTAGAACCTGAGGACTCC
GTTAATGAAGATAATTTTACAGCTGTGCTTTCACAATTTAACGATGCCCCCAACAAAGAA
AGTGAAGCCTATGGAGAAAGTGGATGTGGTAAGCATGGAGAAAACTCTCTAGATGAATCA
GTGGGATCACTTAACATTGGCGTTATTGATTCTGAGTTCATGGATTCAAGTCCTCTAATT
CATGATAAAGAATCATGTTCTCCTCTAGAACCTGAGGACTCCGTTAATGAAGATAATTTT
GCAGCTGTGCTTTCACAATATAGCGATGGCCCCAACGAAGGAAATGAAGGATATGGAGAA
AGTGGACATTACAAGCATGAAGAAAAGTCTCTAGATGAATCAGTGGGATCACTAACCATT
GGCATTATTGATTCTGAGTTCATGGATTCAAGTCGTCCAATTCATGATAAAGAATCATGT
TCTACTGGTTCTGCAGCTGACCAATGTTCAAGGACTATACCGGCTAAATATGAATTAAGT
TCAGAAGAGTCAGATTCCACAGGCAGTCATTTGGTGTTTGACAGTGGCAAGAATTATCTG
GAGTTGAACAATCATTCTGTCACAGATTTGGAAAGGATTTACAATGGACATGCCACGTCT
GTAGATCAATATGTTCGGGGAAATGGGGAGACATTAGCTGACCATCCAAAAAAAGAGGAA
GCTGGCCTCCAAAAGGACACTGGCACCATAGCTCAACATCGTGATACCCTTGCTTGTGAT
GGGGAGTCTGTGTGTTCGAGTTGTGAAGAGCCGAGACGTGGATTAAATGGCGAGCCATCA
GACTTCAGCTCGGAGTCACACTCGAGACTGACCCCAACACATAACACAGGTGGCAAATTG
TCGATGGTTTCTGAACATCCAGTGCATAATATGGAGTCAGATATGACTGGGATGGCAAGT
GATAGCACTAACCCGGAGCTGAATCCTGAAGCCAGCACCAGGAACGAAATGGACGGCTCC
CGATCCACTGATAACCCAGTGGAACCAGAAAACGTAGCTCAGGACAGCGCCACTCGAGGA
AGGCCTGAAGGCGACGCCCCCAGATCAGGGAAAGGGGTTCTGAGGTCGGTCGCTGGAGGA
ATCACCCTTGTCGGCGCAGTGTTCTTCATGTTCCATCTCAGTGCCGCGCTGCTGCAGAAG
AAGCAAGGGGGGAAGCTTTGCGACGGTCATACCATCTCTTTCGGGAAAATCTGCTCGGAG
CAACGCAAGGGCCAGGAACATGGGCAGAGAAAACGTCCCTGA

Peptide Sequence

PEP ID

Zm00001d033654_P028
PEP Infomation

pep chromosome:B73_RefGen_v4:1:269766452:269771428:-1 gene:Zm00001d033654 transcript:Zm00001d033654_T028 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm10 description: opaque endosperm10
Sequence

MPNYVVGGIRRNLEQTQYSSSSSSGYSPCARSKVLQQQIIFGGQNDQHEDTHYDSDEAES
KLSLLEPEDSVNEDNFAAVLSQFNDAHNKGSEGYGESGCGKHGEKSLAESVGSLNIGIID
FEFMDSTPLIHDKESCSLLEPEDSVNEDNFAAVLSKFNDAPNKESKGYGESGRGKHGEKS
LAESVGSLNIGIVDSEFMDSSPLIHDKESCSPLEPEGSVNEDNFTAVLSQFNDAPNKESE
GYGESGCGKHGEKSLVESVGSLNIGIVDSEFMDSSPLIHDKESCSPLEPEDSVNEDNFAA
VLSQFNDAPNKESEGYGESGRGKHGEKSLAESVGSLNIGIIDSEFMDSSPLIHDKESCFP
LEPEGSVNEDNFTAVLSQFNDAPNKESEGYGESGCGKHGEKSLVESVGSLNIGIVDSEFM
DSSPLIHDKESCSPLEPEDSVNEDNFTAVLSQFNDAPNKESEAYGESGCGKHGENSLDES
VGSLNIGVIDSEFMDSSPLIHDKESCSPLEPEDSVNEDNFAAVLSQYSDGPNEGNEGYGE
SGHYKHEEKSLDESVGSLTIGIIDSEFMDSSRPIHDKESCSTGSAADQCSRTIPAKYELS
SEESDSTGSHLVFDSGKNYLELNNHSVTDLERIYNGHATSVDQYVRGNGETLADHPKKEE
AGLQKDTGTIAQHRDTLACDGESVCSSCEEPRRGLNGEPSDFSSESHSRLTPTHNTGGKL
SMVSEHPVHNMESDMTGMASDSTNPELNPEASTRNEMDGSRSTDNPVEPENVAQDSATRG
RPEGDAPRSGKGVLRSVAGGITLVGAVFFMFHLSAALLQKKQGGKLCDGHTISFGKICSE
QRKGQEHGQRKRP

Transcript Sequence

Transcript ID

Zm00001d033654_T028
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:269766452:269771428:-1 gene:Zm00001d033654 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:opaque endosperm10 description: opaque endosperm10
Sequence

AAAAGAAAACTTGTTAGTTATCCTGCTTCTGTAAACCAGAGACTACACATGCTATTCTAG
AGTTTACGTAATCATGTACTTAATTTTTCATCTCTATTTATTTTCACGTTTGTTTCAGAC
ACAAACAAAGATCTGGCTTGGAGAAGTTCTACATCTTAGGTTTGGTGAAGACGCTTTAGT
TGCTGATCTTCTTGCTGACGGAGAATTACTGTAAGATCAGTTTCTTCATGAGGCCTCCCT
GCATGAATAAAAGTAATTAGCATGTTGTGCTATGCATATGGATATGGCGTCGCTACCAAA
ATCTTGGATCCCACTGATCTGTATATTTTTTGCTCAGATAGTTTTGGCTCTTTGCAAGTG
TCTACTTGCTTGAGCATTATGATGTCAATCAATCAGATAAAAGAATGCCTAGGATAAATG
GTTTGTGAAAGAATAGAACTGTTTTATGATTAATTGTGTGCTTCTCTCTCTGATATTTAC
TGTATTCTGCTGACTTGTTATGTTTGTGCTATTAGGTTTCAAGTTTCCAAGGTATTATGG
AAAATGTTACTAAAAAATAACAGAGAACAATTGAAACAATCAAAAGTGTATATTTATGAG
AGACTATCCTTCGGTAGAAGTAGTGGAAAATACATGCCCTATTCAAAAGTTGACTCCTTT
CTAAAGGTATGGATCTTTGCACATTTTCCTTCTAGACGATTCGGTTCTATTAATATATTT
TTGAGCGAAATTCTTGATTTTAACTTCATGTGTTCAATATTTTTGTTAACTTGAAGTGCA
TTAATTTTGGTAAAAGTGAACAAATACAAATCTTTCAAAACATTTTTCCCATTTGAGGAG
CTTGAATGAAGCTTTCTTTCCACGAATGCGTACGAAGCATATTCCTAGCATGAATTCCGT
TGCAAGTAGCCAGTCTGATGAGTTTGATCCGTGTAAATTGTCTGTGGTGCATGAAATGCT
CTGTCAATACTTGTGCATGAGGAAATCTAAAAAAACTACTATTGAATCTGCTAGTGATGG
TGTTTTGTACTACTTCCTTGTGAGTTACATGTGCTCTACTGACTAACATTGCTGCAATGA
AACTGAAGAAGCATTAGCTATAGCTACAAATCTGTCGACCTTTGCCTTTTTGCTCTGAAC
TTCCCTGTTTTTTCCATGCTTATCTACCTATTTTAGATCAACTGTATTCTGTACAAGCTC
CTAGTAAAAAGTTGTACTCCCTCTAGTAAAAAAAATTACTTGACTCATTTGACTTTGCAC
GATCTTCGATGATATCTTTGGCCACTAATTTCTTCTGAAATATATCGCAAATTTATGTGC
TTTTGTAATTATTCTTCAACTCACTTTTTATACATATAACTCACATGTTTTTCAAACTAA
ATTTTTGTGTTTTAAGCTTTGACTAGATATTGTCCTAAATGACATGCTCTGATGACGGAA
CTGGTAACATACATAAATTGGATTAAATTCGTTTCTGTGATAAGAATAGGTGCAGGATCT
TGCTTAGTGTCCTAATCCTGCATAAAGCCAACTTTTAGGTGAAGAAAACACCCAACAAAA
ATATTCCAATGGTGCTAAGTTTGGACCTGGTGGAAATTTAACTGCTGCAAGATAATGGTC
TCTCTTGTATACCCATGGCCTAGACCTAGAAGCATGGCAGACATAGATGTGTTGGTGCAT
TTATGTTTTCTTCCTACACTACATTGGTATATTTGGTTGATACTAAAAGTCTTGAAGCAC
GAAGCAGTCACATATACTTTACTGGCTTAGTTTACATTTCTTCTGAAACGGTTGCTTGAG
AATTAGTAATCTCTGTTCTTTTCAGATATGTCAAATCCTTGGGTTAGCTGGAATTGATCT
GTTTACCCCTTCTGATGTGGTCGAAAAAAGAAATGTTCGGAAAGTCTGTATATGCATACG
ATCGGTGTCTAAAAAGTCACTCATCTTGCACCTAAATGTGCCTGATTTTGATGTAGTCAC
CTACACAATATCCATGCCAAACTATGTTGTTGGAGGTATTCGTAGAAATCTGGAGCAGAC
ACAGTACAGCTCATCCAGTTCAAGTGGATACAGTCCATGTGCCCGTTCTAAAGTACTACA
GCAACAGATAATATTTGGAGGGCAGAATGACCAGCACGAGGACACACATTATGACTCTGA
TGAAGCAGAAAGCAAACTCTCTCTTCTAGAACCTGAGGACTCAGTTAATGAAGATAATTT
TGCGGCTGTGCTTTCACAATTTAACGATGCCCACAACAAAGGAAGTGAAGGCTATGGAGA
AAGTGGATGTGGCAAGCATGGAGAAAAATCTCTAGCTGAATCAGTGGGATCACTTAACAT
TGGCATTATTGATTTTGAGTTCATGGATTCAACTCCTCTAATTCATGATAAAGAATCATG
TTCTCTCCTAGAACCTGAGGACTCAGTTAATGAAGATAATTTTGCAGCTGTTCTTTCAAA
ATTTAATGATGCTCCCAACAAAGAAAGCAAAGGCTATGGAGAAAGTGGACGTGGCAAGCA
TGGAGAAAAATCTCTAGCTGAATCAGTGGGATCACTTAACATTGGCATTGTTGACTCTGA
GTTCATGGATTCAAGTCCTCTAATTCATGATAAAGAATCATGTTCTCCTCTAGAACCTGA
GGGCTCCGTTAATGAAGATAATTTTACAGCTGTGCTTTCACAGTTTAACGATGCCCCCAA
CAAAGAAAGTGAAGGCTATGGAGAAAGTGGATGTGGTAAGCATGGAGAAAAATCTCTAGT
TGAATCAGTGGGATCACTTAACATTGGCATTGTTGATTCTGAGTTCATGGATTCAAGTCC
TCTAATTCATGATAAAGAATCATGTTCTCCTCTAGAACCTGAGGACTCAGTTAATGAAGA
TAATTTTGCAGCTGTGCTTTCACAATTTAATGATGCCCCCAACAAAGAAAGCGAAGGCTA
TGGAGAAAGTGGACGTGGCAAGCATGGAGAAAAATCTCTAGCTGAATCAGTGGGATCACT
TAACATTGGCATTATTGATTCTGAGTTCATGGATTCAAGTCCTCTAATTCATGATAAAGA
ATCATGTTTTCCTCTAGAACCTGAGGGCTCCGTTAATGAAGATAATTTTACAGCTGTGCT
TTCACAATTTAACGATGCCCCCAACAAAGAAAGTGAAGGCTATGGAGAAAGTGGATGTGG
TAAGCATGGAGAAAAATCTCTAGTTGAATCAGTGGGATCACTTAACATTGGCATTGTTGA
TTCTGAGTTCATGGATTCAAGTCCTCTAATTCATGATAAAGAATCATGTTCTCCTCTAGA
ACCTGAGGACTCCGTTAATGAAGATAATTTTACAGCTGTGCTTTCACAATTTAACGATGC
CCCCAACAAAGAAAGTGAAGCCTATGGAGAAAGTGGATGTGGTAAGCATGGAGAAAACTC
TCTAGATGAATCAGTGGGATCACTTAACATTGGCGTTATTGATTCTGAGTTCATGGATTC
AAGTCCTCTAATTCATGATAAAGAATCATGTTCTCCTCTAGAACCTGAGGACTCCGTTAA
TGAAGATAATTTTGCAGCTGTGCTTTCACAATATAGCGATGGCCCCAACGAAGGAAATGA
AGGATATGGAGAAAGTGGACATTACAAGCATGAAGAAAAGTCTCTAGATGAATCAGTGGG
ATCACTAACCATTGGCATTATTGATTCTGAGTTCATGGATTCAAGTCGTCCAATTCATGA
TAAAGAATCATGTTCTACTGGTTCTGCAGCTGACCAATGTTCAAGGACTATACCGGCTAA
ATATGAATTAAGTTCAGAAGAGTCAGATTCCACAGGCAGTCATTTGGTGTTTGACAGTGG
CAAGAATTATCTGGAGTTGAACAATCATTCTGTCACAGATTTGGAAAGGATTTACAATGG
ACATGCCACGTCTGTAGATCAATATGTTCGGGGAAATGGGGAGACATTAGCTGACCATCC
AAAAAAAGAGGAAGCTGGCCTCCAAAAGGACACTGGCACCATAGCTCAACATCGTGATAC
CCTTGCTTGTGATGGGGAGTCTGTGTGTTCGAGTTGTGAAGAGCCGAGACGTGGATTAAA
TGGCGAGCCATCAGACTTCAGCTCGGAGTCACACTCGAGACTGACCCCAACACATAACAC
AGGTGGCAAATTGTCGATGGTTTCTGAACATCCAGTGCATAATATGGAGTCAGATATGAC
TGGGATGGCAAGTGATAGCACTAACCCGGAGCTGAATCCTGAAGCCAGCACCAGGAACGA
AATGGACGGCTCCCGATCCACTGATAACCCAGTGGAACCAGAAAACGTAGCTCAGGACAG
CGCCACTCGAGGAAGGCCTGAAGGCGACGCCCCCAGATCAGGGAAAGGGGTTCTGAGGTC
GGTCGCTGGAGGAATCACCCTTGTCGGCGCAGTGTTCTTCATGTTCCATCTCAGTGCCGC
GCTGCTGCAGAAGAAGCAAGGGGGGAAGCTTTGCGACGGTCATACCATCTCTTTCGGGAA
AATCTGCTCGGAGCAACGCAAGGGCCAGGAACATGGGCAGAGAAAACGTCCCTGATGCGT
ATCCCGGGGGGCGGCTGAAGGCTTGACAAGACGATGGAGCACAGTCTGCTTCACAGAATC
TGGATGAACTCTGTC