Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033623_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:1:269049903:269052676:1 gene:Zm00001d033623 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase3 description:Lipoxygenase

Sequence

ATGCCGGCGGCGCTGAAGCCGTACCGCGACGACGAGCTCCGCAACCTCCGCGGCGACGAC
CAGCAGGGCCCCTACCAGGAGCACGACCGCGTGTACCGCTACGACGTCTACAACGACCTC
GGCGAGCCCGACGGCGGCAACCCGCGCCCCATCCTCGGCGGCTCCGCCGACCACCCGTAC
CCGCGCCGCTGCCGCACGGGCCGCAAGCCCACCAAAACCGACCCCAACTCGGAGAGCCGA
CTGTCGCTGGTGGAGCAGATCTACGTGCCGCGGGACGAGCGCTTCGGCCACCTCAAGATG
TCCGACTTCCTGGGCTACTCCATCAAGGCCATCACGCAGGGCATCATCCCGGCGGTGCGC
ACGTACGTGGACACCACCCCGGGCGAGTTCGACTCCTTCCAGGACATCATCAACCTGTAC
GAGGGCGGGATCAAGCTGCCCAAGATCCAGGCGCTCGAGGACATGCGCAAGCTCTTCCCG
CTCCAGCTCGTCAAGGACCTCCTCCCCGCCGGCGGGGACTACCTGCTCAAGCTCCCCATC
CCACAGATCATCCAAGAGGACAAGAACGCGTGGAGGACCGACGAGGAGTTCGCGCGGGAG
GTGCTCGCCGGCGTCAACCCGATGGTGATCACGCGCCTCACGGAGTTCCCGCCCAAGAGC
ACGCTGGACCCCAGCAAGTACGGCGACCACACCAGCACGATCACGGCGGAGCACATCGAG
AAGAACCTCGAGGGCCTCACGGTGCAGCAGGCGCTGGACGGCAACAGGCTCTACATCCTG
GACCACCACGACCGCTTCATGCCGTTCCTCATCGACGTCAACAACCTGGAGGGCAACTTC
ATCTACGCCACCAGGACGCTCTTCTTCCTGCGCGGCGACGGCAGGCTCGCGCCCCTCGCC
ATCGAGCTCAGCGAGCCGTACATCGACGGGGACCTCACCGTGGCCAAGAGCAAGGTCTAC
ACGCCGGCGTCCAGCGGCGTCGAGGCCTGGGTGTGGCAGCTCGCCAAGGCCTATGTCGCC
GTCAACGACTCTGGCTGGCACCAACTCGTCAGCCACTGGCTGAACACCCACGCGGTGATG
GAGCCGTTCGTGATCGCGACGAACCGGCAGCTGAGCGTGACGCACCCGGTGCACAAGCTC
CTGAGCTCGCACTTCCGCGACACCATGACCATCAACGCGCTGGCGCGGCAGACGCTCATC
AACGGCGGCGGCATCTTCGAGATGACCGTCTTCCCGGGCAAGTACGCGCTGGGCATGTCC
TCCGTGGTGTACAAGAGCTGGAACTTCACCGAGCAGGGCCTCCCCGCCGACCTCGTCAAG
AGGGGCGTGGCGGTGGCGGACCCGTCCAGCCCGTACAAGGTGCGGCTGCTGATCGAGGAC
TACCCGTACGCGAGCGACGGGCTGGCCATCTGGCACGCCATCGAGCAGTGGGTGGGCGAG
TACCTGGCCATCTACTACCCCGACGACGGCGCGCTGCGGGGCGACGAGGAGCTGCAGGCG
TGGTGGAAGGAGGTGCGCGAGGTCGGGCACGGCGACCACAAGGACGCGCCCTGGTGGCCC
AAGATGCAGGCCGTGTCGGAGCTCGCCAGCGCCTGCACCACCATCATCTGGATCGCGTCG
GCGCTCCACGCCGCCGTCAACTTCGGCCAGTACCCGTACGCGGGGTACCTCCCGAACAGG
CCCACGGTGAGCCGGCGCCGGATGCCGGAGCCCGGCAGCAAGGAGTACGAGGAGCTGGAG
CGCGACCCGGAGCGCGGCTTCATCCACACCATCACGAGCCAGATCCAGACCATCATCGGC
ATCTCGCTCATCGAGATCCTCTCCAAGCACTCCTCCGACGAGGTGTACCTCGGCCAGCGC
GACACCCCCGAGTGGACCTCCGACGCCCGGGCGCTGGCGGCGTTCAAGAGGTTCAGCGAC
GCGCTGGTCAAGATCGAGGGCAAGGTGGTGGGCGAGAACCGCGACCCGCAGCTGAGGAAC
AGGAACGGCCCCGCCGAGTTCCCCTACATGCTGCTCTATCCCAACACCTCTGACCACAGT
GGCGCCGCCGCAGGGCTCACTGCCAAGGGCATCCCCAACAGCATCTCCATCTGA

Peptide Sequence

PEP ID

Zm00001d033623_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:1:269049903:269052676:1 gene:Zm00001d033623 transcript:Zm00001d033623_T016 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase3 description:Lipoxygenase

Sequence

MPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDLGEPDGGNPRPILGGSADHPY
PRRCRTGRKPTKTDPNSESRLSLVEQIYVPRDERFGHLKMSDFLGYSIKAITQGIIPAVR
TYVDTTPGEFDSFQDIINLYEGGIKLPKIQALEDMRKLFPLQLVKDLLPAGGDYLLKLPI
PQIIQEDKNAWRTDEEFAREVLAGVNPMVITRLTEFPPKSTLDPSKYGDHTSTITAEHIE
KNLEGLTVQQALDGNRLYILDHHDRFMPFLIDVNNLEGNFIYATRTLFFLRGDGRLAPLA
IELSEPYIDGDLTVAKSKVYTPASSGVEAWVWQLAKAYVAVNDSGWHQLVSHWLNTHAVM
EPFVIATNRQLSVTHPVHKLLSSHFRDTMTINALARQTLINGGGIFEMTVFPGKYALGMS
SVVYKSWNFTEQGLPADLVKRGVAVADPSSPYKVRLLIEDYPYASDGLAIWHAIEQWVGE
YLAIYYPDDGALRGDEELQAWWKEVREVGHGDHKDAPWWPKMQAVSELASACTTIIWIAS
ALHAAVNFGQYPYAGYLPNRPTVSRRRMPEPGSKEYEELERDPERGFIHTITSQIQTIIG
ISLIEILSKHSSDEVYLGQRDTPEWTSDARALAAFKRFSDALVKIEGKVVGENRDPQLRN
RNGPAEFPYMLLYPNTSDHSGAAAGLTAKGIPNSISI

Transcript Sequence

Transcript ID

Zm00001d033623_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:269049903:269052676:1 gene:Zm00001d033623 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:lipoxygenase3 description:Lipoxygenase

Sequence

ACCGTCCGTCAGTCAGTCGGCCAACATGCCACGCTGATCTTTCTGTCTTTTGGTGCCGCC
CCGATTCCGAACGGCGGCGCAGACGTACCTGCCAAGCCAGATGCCGGCGGCGCTGAAGCC
GTACCGCGACGACGAGCTCCGCAACCTCCGCGGCGACGACCAGCAGGGCCCCTACCAGGA
GCACGACCGCGTGTACCGCTACGACGTCTACAACGACCTCGGCGAGCCCGACGGCGGCAA
CCCGCGCCCCATCCTCGGCGGCTCCGCCGACCACCCGTACCCGCGCCGCTGCCGCACGGG
CCGCAAGCCCACCAAAACCGACCCCAACTCGGAGAGCCGACTGTCGCTGGTGGAGCAGAT
CTACGTGCCGCGGGACGAGCGCTTCGGCCACCTCAAGATGTCCGACTTCCTGGGCTACTC
CATCAAGGCCATCACGCAGGGCATCATCCCGGCGGTGCGCACGTACGTGGACACCACCCC
GGGCGAGTTCGACTCCTTCCAGGACATCATCAACCTGTACGAGGGCGGGATCAAGCTGCC
CAAGATCCAGGCGCTCGAGGACATGCGCAAGCTCTTCCCGCTCCAGCTCGTCAAGGACCT
CCTCCCCGCCGGCGGGGACTACCTGCTCAAGCTCCCCATCCCACAGATCATCCAAGAGGA
CAAGAACGCGTGGAGGACCGACGAGGAGTTCGCGCGGGAGGTGCTCGCCGGCGTCAACCC
GATGGTGATCACGCGCCTCACGGAGTTCCCGCCCAAGAGCACGCTGGACCCCAGCAAGTA
CGGCGACCACACCAGCACGATCACGGCGGAGCACATCGAGAAGAACCTCGAGGGCCTCAC
GGTGCAGCAGGCGCTGGACGGCAACAGGCTCTACATCCTGGACCACCACGACCGCTTCAT
GCCGTTCCTCATCGACGTCAACAACCTGGAGGGCAACTTCATCTACGCCACCAGGACGCT
CTTCTTCCTGCGCGGCGACGGCAGGCTCGCGCCCCTCGCCATCGAGCTCAGCGAGCCGTA
CATCGACGGGGACCTCACCGTGGCCAAGAGCAAGGTCTACACGCCGGCGTCCAGCGGCGT
CGAGGCCTGGGTGTGGCAGCTCGCCAAGGCCTATGTCGCCGTCAACGACTCTGGCTGGCA
CCAACTCGTCAGCCACTGGCTGAACACCCACGCGGTGATGGAGCCGTTCGTGATCGCGAC
GAACCGGCAGCTGAGCGTGACGCACCCGGTGCACAAGCTCCTGAGCTCGCACTTCCGCGA
CACCATGACCATCAACGCGCTGGCGCGGCAGACGCTCATCAACGGCGGCGGCATCTTCGA
GATGACCGTCTTCCCGGGCAAGTACGCGCTGGGCATGTCCTCCGTGGTGTACAAGAGCTG
GAACTTCACCGAGCAGGGCCTCCCCGCCGACCTCGTCAAGAGGGGCGTGGCGGTGGCGGA
CCCGTCCAGCCCGTACAAGGTGCGGCTGCTGATCGAGGACTACCCGTACGCGAGCGACGG
GCTGGCCATCTGGCACGCCATCGAGCAGTGGGTGGGCGAGTACCTGGCCATCTACTACCC
CGACGACGGCGCGCTGCGGGGCGACGAGGAGCTGCAGGCGTGGTGGAAGGAGGTGCGCGA
GGTCGGGCACGGCGACCACAAGGACGCGCCCTGGTGGCCCAAGATGCAGGCCGTGTCGGA
GCTCGCCAGCGCCTGCACCACCATCATCTGGATCGCGTCGGCGCTCCACGCCGCCGTCAA
CTTCGGCCAGTACCCGTACGCGGGGTACCTCCCGAACAGGCCCACGGTGAGCCGGCGCCG
GATGCCGGAGCCCGGCAGCAAGGAGTACGAGGAGCTGGAGCGCGACCCGGAGCGCGGCTT
CATCCACACCATCACGAGCCAGATCCAGACCATCATCGGCATCTCGCTCATCGAGATCCT
CTCCAAGCACTCCTCCGACGAGGTGTACCTCGGCCAGCGCGACACCCCCGAGTGGACCTC
CGACGCCCGGGCGCTGGCGGCGTTCAAGAGGTTCAGCGACGCGCTGGTCAAGATCGAGGG
CAAGGTGGTGGGCGAGAACCGCGACCCGCAGCTGAGGAACAGGAACGGCCCCGCCGAGTT
CCCCTACATGCTGCTCTATCCCAACACCTCTGACCACAGTGGCGCCGCCGCAGGGCTCAC
TGCCAAGGGCATCCCCAACAGCATCTCCATCTGAGCGACTGGTACCACTACCACCCCAGG
AGTGCTACGTACGAGCTGGTACATGAATAAGCTAATATAAGCAATCGTGTAAACGGGAAG
AGAGCGGCCGGCACGAGACGGACCATGTATTTTGCGTAAACGTGTGGGCTGGTGAATCGA
ATTACTACCACGTAATAAGTGAAGTGCTTGTTG