Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033567_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:267315715:267321461:1 gene:Zm00001d033567 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

ATGAGGAGGCCTCCAATCGTGGCGCGCGTGCGCCGCTCGCTCTTCCTCCTCCTCTGCTGC
TGTTGCTGCCTCGCCGCCTGGTCGTCGCCGCCGGCCGTGCGCGCACTCCCGCTGTGCACC
GACGGGCGGGCGCCGGTGCCGCTGAACAGGACGCTGGGCTTCTGCTCCGCTTACGGCGGG
GGCGGCAGCAGTAGCAGCTGCTGCGACGCCGCAGCGGACGCCGCGCTGCGGAAGAGGTTC
AACGCCATGAACATCTCTGACGCGGCCTGCGCTGGCGTCATCAAGTCTGTCCTCTGCGCG
GAATGCAGTCCATTTTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCAGATGGTTCCT
CTCCTGTGCAACTATACTTCTTCATCAAGTTCTGCTCAATCAAAAGATTCTACACGAGAT
TACTGTAAACTAGTTTGGGAGACTTGCAAAAATGTGACAATAGTGAACTCTCCTTTCCAA
CCTCCCTTGCAAGGAAGTGCAAGACTGCCTAGTTCATCGTCAAAGCTCACAGATGTCTGG
CAGTCAGAACATGACTTCTGCACATCATTTGGTGGCTCATCTGGTGAGCAGTCTTTATGT
TTCAATGGAAATGGAATTTTCTTCAACAGCACAGAACCATCACCCACACCTAAAGGGATA
TGCCTTGAGAGAATCAGCAATGGATCTTATCTGAACATGGCTTCACATCCTGATGGATCC
AACAGAGTTTTCTTGTCTAGCCAAGCTGGAAAGATATGGTTGGCCAGCATCCCAGAACAA
GGCTCTGGGGGCACTCTACAATATGATGAGGCAAACCCATTTCTTGACATAACTGATGAA
GTTTATCATGATTCTCAGTTTGGCCTCATGGGTATAGCATTTCACCCAAAGTTCGCTACT
AATGGGCGCTTCTTTGTTTCTTATAATTGTGATAGAACTCAATCTCCTAAATGTGCTGGT
AGGTGTTCATGTAATTCTGATGCTAACTGTGATCCGTCAAAGCTCGGCACTGATAATGGT
GCTCAGCCATGTCAATACCAAGTTGTTGTTTCGGAGTATTCTACAAAAATCTCCTCACCT
AACGTTTCTATGGCAACATCTGCCAATCCATCTGAGGTTAGAAGGATTTTTACAATGGGA
CTGCCGTATATAGCTCACCATGGAGGGCAAATACTATTTGGACCAACAGATGGATACCTT
TACCTTATGATGGGGGATGGTGGAAGTGAAGGCGACCCTTTTAATTTCTCTCAAAATAAG
AAATCACTTTTGGGGAAAATAATGAGGCTTGATGTTGACAGCACACAAGGCCAAAGTCAA
ACCACAAATCAGAGTTTGTGGGGTAACTATTCTATTCCAAAGGACAATCCGTTTGCTGAT
GATAGTGACTTTCAACCAGAGATATGGGCCTTGGGATTTAGCAACCCGTGGAGATGCAGC
TTTGACTCCGAGAGGCCTTCGTACTTCTACTGTGGAGACGTTGGGAAGGACGCATACGAA
GAGGTAGATTTAGTCACCAAGGGTGGAAACTACGGATGGCGTGTATACGAGGGGCCATAC
ATCTTTCACCCGCAAAAGTCGCCTGGAGGGAATACTTCGCCTGAGTCCATAAACGCAATC
TTCCCCGTCATGGGCTACGACCATTCTGCTGTGAACAAGGAAATCGGGTCAGCATCGATC
ACAGGCGGATATGTGTACCGAGGTTCCGCTGACCCCTGCTTGTACGGAAGGTACCTCTAC
ACCGACCTGTACTCATCGCTGATGTGGACGGGCACGGAGGCCCCAGAGGGGAGCGGGAAC
TACACGTCGGCCGTGAAGCCGGTGAGCTGCTCCAAGGCCTCCCCGATCGGCTGCGAGTCC
GTCGCCGGGAGCACGGACCCGCTGCTCGGGTACGTCTTCTCGTTCGGGGAGGACAGCCGC
AAGGACGTCTTCGTCCTGGCGAGCAAGGGCGTGTACCGCGTCGTCAGGCCCAGCCTCTGC
GGCTACACCTGCCCCGCGGAGAGACCGGCGACCGACAACGGCACCGCGCCAGGTCCAGGC
GGGCCGTCGTCGGGCGCTCCCGCCGCGACACGGCTAGGGAGGTCGGTGGCGGCGGTAGCG
GTAGCTCTGGCGTTGATCCCGTGTGTGCTGTTACTGTGA

Peptide Sequence

PEP ID

Zm00001d033567_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:267315715:267321461:1 gene:Zm00001d033567 transcript:Zm00001d033567_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

MRRPPIVARVRRSLFLLLCCCCCLAAWSSPPAVRALPLCTDGRAPVPLNRTLGFCSAYGG
GGSSSSCCDAAADAALRKRFNAMNISDAACAGVIKSVLCAECSPFSAELFNSSSKIQMVP
LLCNYTSSSSSAQSKDSTRDYCKLVWETCKNVTIVNSPFQPPLQGSARLPSSSSKLTDVW
QSEHDFCTSFGGSSGEQSLCFNGNGIFFNSTEPSPTPKGICLERISNGSYLNMASHPDGS
NRVFLSSQAGKIWLASIPEQGSGGTLQYDEANPFLDITDEVYHDSQFGLMGIAFHPKFAT
NGRFFVSYNCDRTQSPKCAGRCSCNSDANCDPSKLGTDNGAQPCQYQVVVSEYSTKISSP
NVSMATSANPSEVRRIFTMGLPYIAHHGGQILFGPTDGYLYLMMGDGGSEGDPFNFSQNK
KSLLGKIMRLDVDSTQGQSQTTNQSLWGNYSIPKDNPFADDSDFQPEIWALGFSNPWRCS
FDSERPSYFYCGDVGKDAYEEVDLVTKGGNYGWRVYEGPYIFHPQKSPGGNTSPESINAI
FPVMGYDHSAVNKEIGSASITGGYVYRGSADPCLYGRYLYTDLYSSLMWTGTEAPEGSGN
YTSAVKPVSCSKASPIGCESVAGSTDPLLGYVFSFGEDSRKDVFVLASKGVYRVVRPSLC
GYTCPAERPATDNGTAPGPGGPSSGAPAATRLGRSVAAVAVALALIPCVLLL

Transcript Sequence

Transcript ID

Zm00001d033567_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:267315715:267321461:1 gene:Zm00001d033567 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

ATGCCATGCTGCCAATGCCGCCTCCTGCCTACCCTGGTCTTCCAATAAATCAACCTGCTC
CCCGACGCGGCGAGGCTCGGCCATGCCCGTGAGCTGTAGGCGCACCCGGAGGCCGCAGCA
CAGCAGCCACGGATGAGGAGGCCTCCAATCGTGGCGCGCGTGCGCCGCTCGCTCTTCCTC
CTCCTCTGCTGCTGTTGCTGCCTCGCCGCCTGGTCGTCGCCGCCGGCCGTGCGCGCACTC
CCGCTGTGCACCGACGGGCGGGCGCCGGTGCCGCTGAACAGGACGCTGGGCTTCTGCTCC
GCTTACGGCGGGGGCGGCAGCAGTAGCAGCTGCTGCGACGCCGCAGCGGACGCCGCGCTG
CGGAAGAGGTTCAACGCCATGAACATCTCTGACGCGGCCTGCGCTGGCGTCATCAAGTCT
GTCCTCTGCGCGGAATGCAGTCCATTTTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATT
CAGATGGTTCCTCTCCTGTGCAACTATACTTCTTCATCAAGTTCTGCTCAATCAAAAGAT
TCTACACGAGATTACTGTAAACTAGTTTGGGAGACTTGCAAAAATGTGACAATAGTGAAC
TCTCCTTTCCAACCTCCCTTGCAAGGAAGTGCAAGACTGCCTAGTTCATCGTCAAAGCTC
ACAGATGTCTGGCAGTCAGAACATGACTTCTGCACATCATTTGGTGGCTCATCTGGTGAG
CAGTCTTTATGTTTCAATGGAAATGGAATTTTCTTCAACAGCACAGAACCATCACCCACA
CCTAAAGGGATATGCCTTGAGAGAATCAGCAATGGATCTTATCTGAACATGGCTTCACAT
CCTGATGGATCCAACAGAGTTTTCTTGTCTAGCCAAGCTGGAAAGATATGGTTGGCCAGC
ATCCCAGAACAAGGCTCTGGGGGCACTCTACAATATGATGAGGCAAACCCATTTCTTGAC
ATAACTGATGAAGTTTATCATGATTCTCAGTTTGGCCTCATGGGTATAGCATTTCACCCA
AAGTTCGCTACTAATGGGCGCTTCTTTGTTTCTTATAATTGTGATAGAACTCAATCTCCT
AAATGTGCTGGTAGGTGTTCATGTAATTCTGATGCTAACTGTGATCCGTCAAAGCTCGGC
ACTGATAATGGTGCTCAGCCATGTCAATACCAAGTTGTTGTTTCGGAGTATTCTACAAAA
ATCTCCTCACCTAACGTTTCTATGGCAACATCTGCCAATCCATCTGAGGTTAGAAGGATT
TTTACAATGGGACTGCCGTATATAGCTCACCATGGAGGGCAAATACTATTTGGACCAACA
GATGGATACCTTTACCTTATGATGGGGGATGGTGGAAGTGAAGGCGACCCTTTTAATTTC
TCTCAAAATAAGAAATCACTTTTGGGGAAAATAATGAGGCTTGATGTTGACAGCACACAA
GGCCAAAGTCAAACCACAAATCAGAGTTTGTGGGGTAACTATTCTATTCCAAAGGACAAT
CCGTTTGCTGATGATAGTGACTTTCAACCAGAGATATGGGCCTTGGGATTTAGCAACCCG
TGGAGATGCAGCTTTGACTCCGAGAGGCCTTCGTACTTCTACTGTGGAGACGTTGGGAAG
GACGCATACGAAGAGGTAGATTTAGTCACCAAGGGTGGAAACTACGGATGGCGTGTATAC
GAGGGGCCATACATCTTTCACCCGCAAAAGTCGCCTGGAGGGAATACTTCGCCTGAGTCC
ATAAACGCAATCTTCCCCGTCATGGGCTACGACCATTCTGCTGTGAACAAGGAAATCGGG
TCAGCATCGATCACAGGCGGATATGTGTACCGAGGTTCCGCTGACCCCTGCTTGTACGGA
AGGTACCTCTACACCGACCTGTACTCATCGCTGATGTGGACGGGCACGGAGGCCCCAGAG
GGGAGCGGGAACTACACGTCGGCCGTGAAGCCGGTGAGCTGCTCCAAGGCCTCCCCGATC
GGCTGCGAGTCCGTCGCCGGGAGCACGGACCCGCTGCTCGGGTACGTCTTCTCGTTCGGG
GAGGACAGCCGCAAGGACGTCTTCGTCCTGGCGAGCAAGGGCGTGTACCGCGTCGTCAGG
CCCAGCCTCTGCGGCTACACCTGCCCCGCGGAGAGACCGGCGACCGACAACGGCACCGCG
CCAGGTCCAGGCGGGCCGTCGTCGGGCGCTCCCGCCGCGACACGGCTAGGGAGGTCGGTG
GCGGCGGTAGCGGTAGCTCTGGCGTTGATCCCGTGTGTGCTGTTACTGTGACCTTCAGAT
GTGTGTCTCGTGCGATGTAGTAGGATCAGTCGTAGCTGAAGCTACTGGGAGCTGGAAGAG
TACATACGTATAGCGTGAGTAACGAACACTCAAAAACAGTTGTGCTATGTGGATGCCTCT
GGACAAGACAAAGAGCAATGGGTAGTTTTGGCGCGGCGCTGGAACGTTCGGT