Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033556_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:1:267106677:267108689:1 gene:Zm00001d033556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonate 4-alpha-galacturonosyltransferase
Sequence

ATGGGCCAAGTTTTATCAAAAGCAAGGGATCTATTGTACGATTGCAAGGAAATTACCCAG
CGTTTGAGAGCAATGCTTCAGTCAGCAGATGAGCAGGTCCGGAGCTTGAAGAAGCAGAGC
ACCTTCCTTAGCCAGCTAGCAGCTAAGACAATCCCAAATGGCATCCATTGTCTTTCCATG
CGCTTAACGATTGATTATTATCTTCTCTCTCCAGAGAAAAGAAAGTTCCCCAATAGTGAG
AACCTGGAAAATCCTGATCTTTACCATTATGCTCTTTTCTCGGACAATGTTTTGGCAGCA
TCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGGAGCCTGAAAAACATGTATTTCAT
CTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCT
GGGGATGCAACAATCCATGTGGAAAATGTTGATGACTTCAAATGGTTAAACTCTTCTTAC
TGCCCTGTTCTGAAGCAGCTTGAGTCTGCAGCCATGAAAGAATATTATTTCAAGGCTGAT
CGTCCGAAAACACTCTCTGCTGGTTCTTCTAATCTGAAGTATCGAAACCCAAAATATTTG
TCCATGCTCAATCATCTAAGATTTTACCTCCCACAAGTCTATCCCAAGCTGAATAAAATT
CTTTTCCTGGATGATGATATAGTTGTCCAGAGGGACCTAACTGGACTCTGGGAGGTTGAT
CTTAATGGAAATGTAAATGGAGCCGTGGAAACATGTGGAGAGAGTTTTCACCGATTTGAT
AAGTACCTAAATTTCTCAAACCCAAATATTGCTCAGAATTTTGATCCTAATGCATGTGGT
TGGGCTTATGGAATGAACATGTTTGATCTGGAAGAATGGAAGAAGAAAGACATTACTGGA
ATTTACCACAAATGGCAGAACATGAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTG
CCACCAGGGCTTCTAACTTTTTACAAGCTGACACACCCTCTGGACAAATCATGGCATGTG
CTTGGCTTAGGGTACAATCCAACCATTGAGCGCTCAGAGATAGACAATGCTGCTGTCATC
CACTACAATGGTAACATGAAGCCCTGGCTGGAAATTGCAATGATAAAGTATCGGCCTTAC
TGGACAAAGTACATCAATTATCAGCATTCCTACATTCATGGATGCAAGATCAGCCAATAG

Peptide Sequence

PEP ID

Zm00001d033556_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:1:267106677:267108689:1 gene:Zm00001d033556 transcript:Zm00001d033556_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonate 4-alpha-galacturonosyltransferase
Sequence

MGQVLSKARDLLYDCKEITQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNGIHCLSM
RLTIDYYLLSPEKRKFPNSENLENPDLYHYALFSDNVLAASVVVNSTIMNAKEPEKHVFH
LVTDKLNFGAMNMWFLLNPPGDATIHVENVDDFKWLNSSYCPVLKQLESAAMKEYYFKAD
RPKTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQRDLTGLWEVD
LNGNVNGAVETCGESFHRFDKYLNFSNPNIAQNFDPNACGWAYGMNMFDLEEWKKKDITG
IYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAVI
HYNGNMKPWLEIAMIKYRPYWTKYINYQHSYIHGCKISQ

Transcript Sequence

Transcript ID

Zm00001d033556_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:267106677:267108689:1 gene:Zm00001d033556 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonate 4-alpha-galacturonosyltransferase
Sequence

GTGCTTCGGATAGAACCAAAGCAATGGGCCAAGTTTTATCAAAAGCAAGGGATCTATTGT
ACGATTGCAAGGAAATTACCCAGCGTTTGAGAGCAATGCTTCAGTCAGCAGATGAGCAGG
TCCGGAGCTTGAAGAAGCAGAGCACCTTCCTTAGCCAGCTAGCAGCTAAGACAATCCCAA
ATGGCATCCATTGTCTTTCCATGCGCTTAACGATTGATTATTATCTTCTCTCTCCAGAGA
AAAGAAAGTTCCCCAATAGTGAGAACCTGGAAAATCCTGATCTTTACCATTATGCTCTTT
TCTCGGACAATGTTTTGGCAGCATCAGTTGTGGTCAACTCAACCATCATGAATGCTAAGG
AGCCTGAAAAACATGTATTTCATCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACA
TGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATCCATGTGGAAAATGTTGATGACT
TCAAATGGTTAAACTCTTCTTACTGCCCTGTTCTGAAGCAGCTTGAGTCTGCAGCCATGA
AAGAATATTATTTCAAGGCTGATCGTCCGAAAACACTCTCTGCTGGTTCTTCTAATCTGA
AGTATCGAAACCCAAAATATTTGTCCATGCTCAATCATCTAAGATTTTACCTCCCACAAG
TCTATCCCAAGCTGAATAAAATTCTTTTCCTGGATGATGATATAGTTGTCCAGAGGGACC
TAACTGGACTCTGGGAGGTTGATCTTAATGGAAATGTAAATGGAGCCGTGGAAACATGTG
GAGAGAGTTTTCACCGATTTGATAAGTACCTAAATTTCTCAAACCCAAATATTGCTCAGA
ATTTTGATCCTAATGCATGTGGTTGGGCTTATGGAATGAACATGTTTGATCTGGAAGAAT
GGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGAACGAGAACAGGC
TGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAACTTTTTACAAGCTGACACACC
CTCTGGACAAATCATGGCATGTGCTTGGCTTAGGGTACAATCCAACCATTGAGCGCTCAG
AGATAGACAATGCTGCTGTCATCCACTACAATGGTAACATGAAGCCCTGGCTGGAAATTG
CAATGATAAAGTATCGGCCTTACTGGACAAAGTACATCAATTATCAGCATTCCTACATTC
ATGGATGCAAGATCAGCCAATAGAAACCACCCTCAGATATTCTTCTGTGATGAACATTGA
AGTTGGATGGGACTCAAAATGAAATCAGTATAACTATCACATGTTCTTTATTCGTGTTAT
ATTAGATTTGTTAGTTATCACGTGTATGTAGTTTCGTCGCCCTTCTCATTGTTGGTTCTT
GTCCCTTTTTGTCATGAAAAGAATGATGAGCTCTATGATTCTCATCAGCTGATAAATGTA
ATGTCTGAATTTCTGTCGGT