Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033552_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:1:266968290:266975300:1 gene:Zm00001d033552 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

ATGTGGAACCCACTGTCATGGGTCATGGAGGCTGCAGCTATCATGGCCATCGCACTGGCC
AATGGTGGGGGAAAGCCACCAGACTGGCAGGATTTCGTTGGTATCATCACACTGCTGCTT
ATCAACTCAACTATCAGTTTCATAGAGGAAAATAATGCTGGGAATGCTGCTGCTGCGCTT
ATGGCCCGCCTTGCGCCGAAAGCCAAGGTGCTTCGTGATGGCCGTTGGGCCGAGGAAGAG
GCAGCCGTCCTTGTGCCTGGGGATGTAATCAGCATTAAACTTGGAGATATCATCCCTGCA
GATGCTCGGCTCCTTGATGGAGATCCCTTGAAGATCGATCAGTCTTCGCTAACTGGAGAA
TCGTTGCCAGTCACCAAAGGTCCTGGTGATGGTGCCTACTCTGGTTCGACTGTCAAGCAG
GGTGAAATTGAGGCTGTTGTGATAGCAACTGGTGTCCACACTTTCTTTGGGAAGGCTGCG
CATCTTGTTGACTCCACGAATCAAGTTGGCCATTTCCAGAAGGTATTGACAGCCATTGGG
AACTTTTGTATTTGTTCAATTGCTGTGGGGATGTTTGTTGAGATAATTGTCATGTACCCT
ATCCAGCATAGGGCGTATCGTCCTGGGATTGACAATCTTTTGGTGCTACTTATTGGAGGC
ATTCCCATAGCAATGCCTACAGTTTTGTCTGTGACCATGGCAATTGGGTCCCATCGCTTG
GCTCAACAGGGAGCTATAACAAAAAGAATGACTGCAATTGAAGAGATGGCTGGTATGGAT
GTACTTTGTAGTGACAAAACTGGAACTCTGACTCTGAATAAACTCACAGTGGACAAGAAC
CTCATTGAGGTTTTTGAAAGGGAAGTGACTCAAGACCAAGTAATTCTGATGGCTGCTAGA
GCCTCCCGAATAGAAAATCAAGATGCTATTGATACTGCTATAGTTGGCATGCTAGCTGAT
CCAAAAGAGGCCCGTGCTGGTATTCAAGAGGTTCATTTCCTTCCATTTAATCCTACCGAC
AAAAGAACTGCCTTGACATACATTGATAGTGATGGGAAGATGTACCGTGTTAGTAAAGGT
GCGCCAGAGCAGATTCTCAACCTCGTCTACAATAAGTTGGAGATAGAACGAAGAGTTCAT
GCTGTAATTGACAAGTTTGCTGAGCGTGGACTTAGATCACTTGCTGTAGCGTATCAGGTA
GTGCCAGATGGAAGGAAAGAGAGTCCCGGTGGGCCATGGCATTTTGTTGCTCTTATGCCA
CTCTTTGATCCTCCAAGGCATGACAGTGCAGAAACAATACGAAGGGCATTGAACCTTGGT
GTTAGTGTAAAAATGATCACAGGTGATCAGCTAGCAATTGGGAAGGAAACAGGACGTCGC
TTAGGCATGGGTACTAACATGTACCCTTCCTCTGCTTTGCTGGGACAGAATAAGGATGAG
TCTATTGCTGTTTTACCTGTTGACGATTTAATTGAGAAAGCGGATGGTTTTGCTGGCGTA
TTCCCTGAGCACAAATATGAGATTGTAAAACGTCTGCAAGCACGAAAACACATTTGTGGA
ATGACTGGCGATGGAGTAAATGATGCCCCTGCCCTAAAGAAAGCTGATATTGGTATAGCA
GTTGCTGATGCCACTGATGCAGCCAGGAGTGCTTCTGACATTGTCCTGACAGAACCTGGC
TTGAGTGTGATAATTAGTGCCGTTCTTACCAGCCGGGCGATTTTCCAGAGGATGAAGAAC
TACACTATCTATGCTGTTTCCATTACAATACGTATTGTGCTAGGATTTATGCTACTTGCC
CTCATATGGGAGTTCGATTTCCCACCATTTATGGTACTTATTATTGCAATTCTAAATGAC
GGTACCATAATGACCATATCGAAGGATCGAGTGAAGCCTTCGCCTCTACCGGACAGCTGG
AAGCTGGCCGAGATTTTCACAACTGGAATTGTGCTTGGTGGATACCTGGCAGTGATGACT
GTCATCTTCTTCTGGGCTGCATATAAGACAAACTTTTTCCCTAGGATCTTCCACGTTGAA
AGCCTTGAGAAGACAGCTCAAGATGATTACCAGAAACTCGCCTCTGCCGTATATCTCCAA
GTTAGCACCATCAGCCAAGCTCTCATCTTCGTGACGAGGTCTCGCAGCTGGTCATTCGCT
GAGCGCCCGGGCTTTCTACTAGTGTTTGCCTTCCTGGTCGCGCAGCTGATAGCTACACTG
GTAGCTGTATACGCGGACTGGGGGTTCACTTCGATCGAAGGCATTGGATGGGGCTGGGCT
GGTGTGGTGTGGCTCTACAACCTCGTCTTCTACTTCCCGCTCGACCTCCTCAAGTTCCTC
ATCCGATACGCTCTGAGTGGCAAAGCGTGGGATCTTGTCATTGAGCAAAGGATTGCGTTT
ACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGCTCAAGTGGGCACACGCGCAGAGG
ACGCTCCACGGGCTGCAGCCACCGGATGCCAAGCTGTTCCCTGACAGGGTGAACGAGCTG
AATCAGATGGCCGAAGAGGCCAAACGGAGGGCCGAGATTGCAAGGCTGAGGGAGCTTCAC
ACGCTGAAGGGGCATGTGGAGTCGGTTGTGAAGCTCAAGGGCCTAGACATCGACACCATC
CAGCAGTCGTACACAGTCTGA

Peptide Sequence

PEP ID

Zm00001d033552_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:1:266968290:266975300:1 gene:Zm00001d033552 transcript:Zm00001d033552_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAAL
MARLAPKAKVLRDGRWAEEEAAVLVPGDVISIKLGDIIPADARLLDGDPLKIDQSSLTGE
SLPVTKGPGDGAYSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG
NFCICSIAVGMFVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL
AQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFEREVTQDQVILMAAR
ASRIENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDSDGKMYRVSKG
APEQILNLVYNKLEIERRVHAVIDKFAERGLRSLAVAYQVVPDGRKESPGGPWHFVALMP
LFDPPRHDSAETIRRALNLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDE
SIAVLPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIA
VADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLA
LIWEFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGGYLAVMT
VIFFWAAYKTNFFPRIFHVESLEKTAQDDYQKLASAVYLQVSTISQALIFVTRSRSWSFA
ERPGFLLVFAFLVAQLIATLVAVYADWGFTSIEGIGWGWAGVVWLYNLVFYFPLDLLKFL
IRYALSGKAWDLVIEQRIAFTRKKDFGKEERALKWAHAQRTLHGLQPPDAKLFPDRVNEL
NQMAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIDTIQQSYTV

Transcript Sequence

Transcript ID

Zm00001d033552_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:266968290:266975300:1 gene:Zm00001d033552 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

GTCGACTTGGTAACTGCTGGCCTTCCTCTTGTTGGGGTTGGGACGGTTCTTGGTGGGACA
ACGCTGCCGTTGGGCATATTTGCTGGTTCTTGGATTTCTTGGTTATTGCGTTGGTGTACA
ATCCTTCTGTTATACTATGTTCTCGGATTCCTGCGTTAGTACTTCGTTGCTTACTCATGG
GTTGCATGGAAATGTAAGAGGCTTGGGTTGCTAGTCCTTGTTCTGCTGGTGCGCTGGGAG
GCAGAATCGGGATGATTTCTACCTCCGTTCTTTTCTATTTACCGCTCGCTAGTTTATTTT
TGAACTAAACTACCACAAATAAATAAGGAGGAAGTATATGTGAATATCATTATCAGAATT
CTAGGTGACGACCCTGTAATAAGGTTCTTTATTGCTCTTTTCCATGTTCTTGCCACACAT
TCTGATCTTGACATCCTTTTGCTTCTATGAATAAGTTAGCATCTTTCTTTTCTACTCTCT
TCTGATCATGATATCCCTTTGCTTGATGATTGTTGGCAATGGCATCTACCATCTTGCTTA
ATTATTTCCGTCATCCCATTTTTCTATTTGGTTAAATAATCTGCATGCAAGTTTTGTTCT
ATCGGCAATCGTACCTTGGACCCTTGGTTTGGTTGGTAGCAATAGCGGGTTGCAAATGGG
CACTTAGCATTATAGTTTCTCTCGTTTATTTTGATGTGCGTCATGGTGATCAAATTGTCT
GCCCTTTTCCCCAGATAACAGAATTTGTTCGTTTTATTACAATTATTTTGTAGGAGAACA
TCCCACTTGAGGAAGTTTTTGAGAATCTGAGATGCAGTCGTGGGGGGCTCACTTCCGAGC
AGGCGCAGCAACGCCTGCAATTATTTGGCCCCAACAAGCTCGAAGAGAAGGAGGAGAGCA
AATTTCTCAAGTTTCTGGGATTCATGTGGAACCCACTGTCATGGGTCATGGAGGCTGCAG
CTATCATGGCCATCGCACTGGCCAATGGTGGGGGAAAGCCACCAGACTGGCAGGATTTCG
TTGGTATCATCACACTGCTGCTTATCAACTCAACTATCAGTTTCATAGAGGAAAATAATG
CTGGGAATGCTGCTGCTGCGCTTATGGCCCGCCTTGCGCCGAAAGCCAAGGTGCTTCGTG
ATGGCCGTTGGGCCGAGGAAGAGGCAGCCGTCCTTGTGCCTGGGGATGTAATCAGCATTA
AACTTGGAGATATCATCCCTGCAGATGCTCGGCTCCTTGATGGAGATCCCTTGAAGATCG
ATCAGTCTTCGCTAACTGGAGAATCGTTGCCAGTCACCAAAGGTCCTGGTGATGGTGCCT
ACTCTGGTTCGACTGTCAAGCAGGGTGAAATTGAGGCTGTTGTGATAGCAACTGGTGTCC
ACACTTTCTTTGGGAAGGCTGCGCATCTTGTTGACTCCACGAATCAAGTTGGCCATTTCC
AGAAGGTATTGACAGCCATTGGGAACTTTTGTATTTGTTCAATTGCTGTGGGGATGTTTG
TTGAGATAATTGTCATGTACCCTATCCAGCATAGGGCGTATCGTCCTGGGATTGACAATC
TTTTGGTGCTACTTATTGGAGGCATTCCCATAGCAATGCCTACAGTTTTGTCTGTGACCA
TGGCAATTGGGTCCCATCGCTTGGCTCAACAGGGAGCTATAACAAAAAGAATGACTGCAA
TTGAAGAGATGGCTGGTATGGATGTACTTTGTAGTGACAAAACTGGAACTCTGACTCTGA
ATAAACTCACAGTGGACAAGAACCTCATTGAGGTTTTTGAAAGGGAAGTGACTCAAGACC
AAGTAATTCTGATGGCTGCTAGAGCCTCCCGAATAGAAAATCAAGATGCTATTGATACTG
CTATAGTTGGCATGCTAGCTGATCCAAAAGAGGCCCGTGCTGGTATTCAAGAGGTTCATT
TCCTTCCATTTAATCCTACCGACAAAAGAACTGCCTTGACATACATTGATAGTGATGGGA
AGATGTACCGTGTTAGTAAAGGTGCGCCAGAGCAGATTCTCAACCTCGTCTACAATAAGT
TGGAGATAGAACGAAGAGTTCATGCTGTAATTGACAAGTTTGCTGAGCGTGGACTTAGAT
CACTTGCTGTAGCGTATCAGGTAGTGCCAGATGGAAGGAAAGAGAGTCCCGGTGGGCCAT
GGCATTTTGTTGCTCTTATGCCACTCTTTGATCCTCCAAGGCATGACAGTGCAGAAACAA
TACGAAGGGCATTGAACCTTGGTGTTAGTGTAAAAATGATCACAGGTGATCAGCTAGCAA
TTGGGAAGGAAACAGGACGTCGCTTAGGCATGGGTACTAACATGTACCCTTCCTCTGCTT
TGCTGGGACAGAATAAGGATGAGTCTATTGCTGTTTTACCTGTTGACGATTTAATTGAGA
AAGCGGATGGTTTTGCTGGCGTATTCCCTGAGCACAAATATGAGATTGTAAAACGTCTGC
AAGCACGAAAACACATTTGTGGAATGACTGGCGATGGAGTAAATGATGCCCCTGCCCTAA
AGAAAGCTGATATTGGTATAGCAGTTGCTGATGCCACTGATGCAGCCAGGAGTGCTTCTG
ACATTGTCCTGACAGAACCTGGCTTGAGTGTGATAATTAGTGCCGTTCTTACCAGCCGGG
CGATTTTCCAGAGGATGAAGAACTACACTATCTATGCTGTTTCCATTACAATACGTATTG
TGCTAGGATTTATGCTACTTGCCCTCATATGGGAGTTCGATTTCCCACCATTTATGGTAC
TTATTATTGCAATTCTAAATGACGGTACCATAATGACCATATCGAAGGATCGAGTGAAGC
CTTCGCCTCTACCGGACAGCTGGAAGCTGGCCGAGATTTTCACAACTGGAATTGTGCTTG
GTGGATACCTGGCAGTGATGACTGTCATCTTCTTCTGGGCTGCATATAAGACAAACTTTT
TCCCTAGGATCTTCCACGTTGAAAGCCTTGAGAAGACAGCTCAAGATGATTACCAGAAAC
TCGCCTCTGCCGTATATCTCCAAGTTAGCACCATCAGCCAAGCTCTCATCTTCGTGACGA
GGTCTCGCAGCTGGTCATTCGCTGAGCGCCCGGGCTTTCTACTAGTGTTTGCCTTCCTGG
TCGCGCAGCTGATAGCTACACTGGTAGCTGTATACGCGGACTGGGGGTTCACTTCGATCG
AAGGCATTGGATGGGGCTGGGCTGGTGTGGTGTGGCTCTACAACCTCGTCTTCTACTTCC
CGCTCGACCTCCTCAAGTTCCTCATCCGATACGCTCTGAGTGGCAAAGCGTGGGATCTTG
TCATTGAGCAAAGGATTGCGTTTACAAGGAAGAAGGACTTCGGGAAGGAGGAGAGGGCGC
TCAAGTGGGCACACGCGCAGAGGACGCTCCACGGGCTGCAGCCACCGGATGCCAAGCTGT
TCCCTGACAGGGTGAACGAGCTGAATCAGATGGCCGAAGAGGCCAAACGGAGGGCCGAGA
TTGCAAGGCTGAGGGAGCTTCACACGCTGAAGGGGCATGTGGAGTCGGTTGTGAAGCTCA
AGGGCCTAGACATCGACACCATCCAGCAGTCGTACACAGTCTGATGACCCTGGATTAAGT
ACATACATGTATATCTAGTTCTGGCAGGTGGCAGTCGCCTGCTTGTTTGTATTTGCCATA
TACCATAACACATCATGAGAACTGGTAGTTGG