Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d033502_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:1:264618519:264642123:1 gene:Zm00001d033502 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 15
Sequence

ATGCTTCTTGCCTTCTGCTGTAGCATCACATTTTCAAGTGTCTTCGGCCTCTTCAATGTT
CCTGCAAAATGGTACGCATGGATTTTGCTAGTGCTATTTCAGTTTCTCGCAAGCAATGTT
TCATTGCTGGGACACCTTTGTGGCATCTTGTCAGGATTTGCATACACTTATGGGCTGTTC
AACTACTTGCTTCCTGGGCCATCATTTTATTCTAAAATCGAAGGCTTGTCAGCACTATCT
GTTTGTGTGAGGCGTCCTGGCTTTATTATGTGTACTGGAGGCACTACTTATGGTCAGCTT
CCTACATACTCTAACACGTCTGCTGCACCAAGTGCTCTCATAAATGGAAATTTCTTGAGA
AATATATCTTCATGGATGCCTAGCAGACACACATCAACTGCTCAGGAAGGAGAAGACCCA
AGGTTTCCTGGGAGAGCACGAACACTTGGTTCTGTAGGAACTGAACCCACTGCAAGGGAG
GCAAGTGCGCATTTGCATGCTAGGTTGCATACAGCTGTGAACACAGTCAGAGCTGATGCA
ACAGTGACAGCTGAGCAGGTTGATACATTTGATGAAGAACTTAAGAAGCTGGTTGGAATG
GGCTTTGAAAAGACTCAGGCTGAAGTTGCTCTTGCTGCAGCTGATGGGGATCCAAATGTT
GCCATTGAGATTCTGATGAGTCAGCAGGGTTGA

Peptide Sequence

PEP ID

Zm00001d033502_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:1:264618519:264642123:1 gene:Zm00001d033502 transcript:Zm00001d033502_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 15
Sequence

MLLAFCCSITFSSVFGLFNVPAKWYAWILLVLFQFLASNVSLLGHLCGILSGFAYTYGLF
NYLLPGPSFYSKIEGLSALSVCVRRPGFIMCTGGTTYGQLPTYSNTSAAPSALINGNFLR
NISSWMPSRHTSTAQEGEDPRFPGRARTLGSVGTEPTAREASAHLHARLHTAVNTVRADA
TVTAEQVDTFDEELKKLVGMGFEKTQAEVALAAADGDPNVAIEILMSQQG

Transcript Sequence

Transcript ID

Zm00001d033502_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:264618519:264642123:1 gene:Zm00001d033502 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein 15
Sequence

ACGCAGGCTGGGATTCCAACTAGGTTGAATCAGTGGTGGAGCAGCATTCCGTTTGTTACT
TCTGGTGTTATCTTGATATGTGGAGTAATTTATCTGCTCTGCTTGTTGATTGGCTATGAT
TCCTATGTGGAGATATGCTTCTTGCCTTCTGCTGTAGCATCACATTTTCAAGTGTCTTCG
GCCTCTTCAATGTTCCTGCAAAATGGTACGCATGGATTTTGCTAGTGCTATTTCAGTTTC
TCGCAAGCAATGTTTCATTGCTGGGACACCTTTGTGGCATCTTGTCAGGATTTGCATACA
CTTATGGGCTGTTCAACTACTTGCTTCCTGGGCCATCATTTTATTCTAAAATCGAAGGCT
TGTCAGCACTATCTGTTTGTGTGAGGCGTCCTGGCTTTATTATGTGTACTGGAGGCACTA
CTTATGGTCAGCTTCCTACATACTCTAACACGTCTGCTGCACCAAGTGCTCTCATAAATG
GAAATTTCTTGAGAAATATATCTTCATGGATGCCTAGCAGACACACATCAACTGCTCAGG
AAGGAGAAGACCCAAGGTTTCCTGGGAGAGCACGAACACTTGGTTCTGTAGGAACTGAAC
CCACTGCAAGGGAGGCAAGTGCGCATTTGCATGCTAGGTTGCATACAGCTGTGAACACAG
TCAGAGCTGATGCAACAGTGACAGCTGAGCAGGTTGATACATTTGATGAAGAACTTAAGA
AGCTGGTTGGAATGGGCTTTGAAAAGACTCAGGCTGAAGTTGCTCTTGCTGCAGCTGATG
GGGATCCAAATGTTGCCATTGAGATTCTGATGAGTCAGCAGGGTTGAAGTTTGACCATAA
AGTACAAATTGAAAGGAAGCACGGTATCGAGCCATTTTTTGTTCTTACAAAGGTTCAAAA
AGTAGGCTGTGGTTTGGGGAGTCTGAAAAAGGATGGCTGCAATCTTGTTTATACCGGGGG
TGCAGAAACAACGTGCAGCCTAATTGCAATTCTCAAGGCTTTATGTAAGGTAGAAAGTAA
CGTTGGATGTTCTGTTAAATACGAACAATCAGAAAATGCTGAATTTAGTCTGAAAATAGC
CAGTGTGTTTGTTTTAGCTTGCAGATTATTACAATCTACAAGCCAGGGGAAACTAGATTA
TTGGGCTGTAACAATAAGACTTTGACGTTGGGACTGGTTCCCTTTT