Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d033383_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:1:261132806:261136658:-1 gene:Zm00001d033383 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylpyrimidine phosphate synthase1 description: hydroxymethylpyrimidine phosphate synthase1
Sequence	ATGTTATACTGTGCCAGCCGTGAGAACCTTAGTCCTGAATTTGTTCGGACAGAAGTTGCC CGTGGACGAGCCATAATTCCTTCCAACAAGAGGCACCTGGAATTGGAACCCATGATTGTT GGAAGAAACTTCCTTGTAAAGGTGAATGCAAATATTGGGAATTCAGCTGTTGTGAGCTCC ATTGAGGAGGAAGTTCACAAGCTCCAGTGGGCCACGATGTGGGGAGCTGATACTGTCATG GACCTTTCAACAGGGCGACATATCCATGAGACGCGGGAATGGATTATTCGCAACTCTCCG GTTCCTATTGGGACTGTTCCTATTTACCAAGCACTTGAGAAAGTAAATGGTATTGCTGAA AATCTGAGCTGGGAAATTTTTAGGGATACCTTGATTGAACAAGCTGAGCAGGGCGTTGAT TACTTCACAATCCATGCTGGTGTCCTGCTTCGTTACATTCCTCTTACAGCAAAGAGAATG ACGGGCATAGTTTCACGTGGTGGCTCAATCCATGCAAAATGGTGCTTAACTTATCACAAG GAGAACTTTGCATATGAACATTGGGATGACATTCTTGACATATGCAATCAGTATGATGTG GCATTATCAATTGGTGATGGTTTGAGGCCTGGTTCCATTTATGATGCAAATGATAGTGCA CAGTTTGCAGAACTGCTGACTCAAGGTGAACTAACACGTCGAGCATGGGCGAAAGATGTG CAGGTGATGAATGAAGGCCCGGGTCACATCCCAATGCATAAAATTCCTGAAAACATGGAG AAACAGTTGGAGTGGTGTAATGAAGCGCCTTTCTATACATTGGGTCCTTTGACAACTGAT ATTGCACCTGGTTATGATCACATCACTTCAGCCATTGGTGCTGCCAACATTGGAGCTCTT GGCACTGCACTTCTTTGCTATGTAACACCAAAGGAGCACCTTGGGTTGCCCAATCGTGAT GATGTCAAGACTGGTGTAATATCCTACAAAATTTCTGCTCATGCTGCTGATTTGGCGAAG GGTCATCCCTATGCACAAGCTTGGGATGATGCACTTAGCAAGGCAAGGTTTCCTCGGAGA CATCCATTCCAAATGAGGCTAAGGCATCAGCAGCTGTTCTGGCTAGTGGCTAAGGCATCA GCAGCTGTTCTACCATCTTATCTAATGAGATGGGGTGCCTGTGTTCTCAACAGTCTGAGA GCCTCTTAG

Peptide Sequence

PEP ID	Zm00001d033383_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:1:261132806:261136658:-1 gene:Zm00001d033383 transcript:Zm00001d033383_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylpyrimidine phosphate synthase1 description: hydroxymethylpyrimidine phosphate synthase1
Sequence	MLYCASRENLSPEFVRTEVARGRAIIPSNKRHLELEPMIVGRNFLVKVNANIGNSAVVSS IEEEVHKLQWATMWGADTVMDLSTGRHIHETREWIIRNSPVPIGTVPIYQALEKVNGIAE NLSWEIFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLTYHK ENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDSAQFAELLTQGELTRRAWAKDV QVMNEGPGHIPMHKIPENMEKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL GTALLCYVTPKEHLGLPNRDDVKTGVISYKISAHAADLAKGHPYAQAWDDALSKARFPRR HPFQMRLRHQQLFWLVAKASAAVLPSYLMRWGACVLNSLRAS

Transcript Sequence

Transcript ID	Zm00001d033383_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:261132806:261136658:-1 gene:Zm00001d033383 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxymethylpyrimidine phosphate synthase1 description: hydroxymethylpyrimidine phosphate synthase1
Sequence	ATGCTAAACAGGGAATTGTAACAGAGGAGATGTTATACTGTGCCAGCCGTGAGAACCTTA GTCCTGAATTTGTTCGGACAGAAGTTGCCCGTGGACGAGCCATAATTCCTTCCAACAAGA GGCACCTGGAATTGGAACCCATGATTGTTGGAAGAAACTTCCTTGTAAAGGTGAATGCAA ATATTGGGAATTCAGCTGTTGTGAGCTCCATTGAGGAGGAAGTTCACAAGCTCCAGTGGG CCACGATGTGGGGAGCTGATACTGTCATGGACCTTTCAACAGGGCGACATATCCATGAGA CGCGGGAATGGATTATTCGCAACTCTCCGGTTCCTATTGGGACTGTTCCTATTTACCAAG CACTTGAGAAAGTAAATGGTATTGCTGAAAATCTGAGCTGGGAAATTTTTAGGGATACCT TGATTGAACAAGCTGAGCAGGGCGTTGATTACTTCACAATCCATGCTGGTGTCCTGCTTC GTTACATTCCTCTTACAGCAAAGAGAATGACGGGCATAGTTTCACGTGGTGGCTCAATCC ATGCAAAATGGTGCTTAACTTATCACAAGGAGAACTTTGCATATGAACATTGGGATGACA TTCTTGACATATGCAATCAGTATGATGTGGCATTATCAATTGGTGATGGTTTGAGGCCTG GTTCCATTTATGATGCAAATGATAGTGCACAGTTTGCAGAACTGCTGACTCAAGGTGAAC TAACACGTCGAGCATGGGCGAAAGATGTGCAGGTGATGAATGAAGGCCCGGGTCACATCC CAATGCATAAAATTCCTGAAAACATGGAGAAACAGTTGGAGTGGTGTAATGAAGCGCCTT TCTATACATTGGGTCCTTTGACAACTGATATTGCACCTGGTTATGATCACATCACTTCAG CCATTGGTGCTGCCAACATTGGAGCTCTTGGCACTGCACTTCTTTGCTATGTAACACCAA AGGAGCACCTTGGGTTGCCCAATCGTGATGATGTCAAGACTGGTGTAATATCCTACAAAA TTTCTGCTCATGCTGCTGATTTGGCGAAGGGTCATCCCTATGCACAAGCTTGGGATGATG CACTTAGCAAGGCAAGGTTTCCTCGGAGACATCCATTCCAAATGAGGCTAAGGCATCAGC AGCTGTTCTGGCTAGTGGCTAAGGCATCAGCAGCTGTTCTACCATCTTATCTAATGAGAT GGGGTGCCTGTGTTCTCAACAGTCTGAGAGCCTCTTAGCCTGGACTGTTGTGAGATGGGC TGAGAAAGTCCCTTTGAACCTGAACAGGATAATGCCTGCGAAGGGAGTGTGCAATTCTAT TTTCCTGTTTTCCAGGAACCTATCAACCTTTTGGTGGAAATTGAGGTATTGTCCATGATT GCATGGAGCTCAGCAACAAGGTACCTGTTCTCTACTTGTTTGCATTTCTCAAGGGGAAGA TTCTTAACAGGTATCAGCTTCGTCATGACATCTAACAATTTTATTTATAATGTTCAAGTT ATTTAGTTAAATCTACACGACCATGAAATTTGTCAAAGCATTTCCTAGTCCTATATTATC TAGTTTTACTTCTACGTCTATCTGTTCTTTGATTGTGCGCTCCATCTATTCTTTGATGAA GCTTGCGAGTTCTACTTTCTAGACCTATTGAGATAGGACCTTTTGGCACGGTACAATATC AATACTGTTTTGGTGAAGGGAGTATATTTACAGTAGTACAAAAGGAGATGGCTAAACCTG CTACAATTTTTTTTAGATGGACGATGTTTGTCAATTGAGGGTGGGAAGTACCGACCAGAT TGCATTTGACTTCATCCGGCCATCCGGTCTATTAATAAATAACCAAGGAAGTGGTTCTTG GCAACTACCTTTTCCCGTTCTTGTGGTTTTTTTTTCAAATAGGCGTGCTTAAATATTTCG GTCTTTTAAATTAATATTATAAAATTCTCGTCTGAATATTTTTCAAGTCTAGTATTATGC ATGATAATTTACATATGCATGTTGTCTGAAAGCAGAAGCAGATTCTCAAGGCACCTGCTA ATTCAAAACCAAAAATAGGTTGTAACTTCGAAGTTGCTGCATTGGTGAAGAATAATATAT TTTAGTTTTACTCTCAGCTGATTGCTTGTTTGTCATGTTTCACTCCATGCTTCACTCTCG GCTGTATTCTGCATTATACCTTGTTTATATCCAACTGCCATGGCCGATGTGAGATG