Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032981_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:1:245736284:245739878:-1 gene:Zm00001d032981 gene_biotype:protein_coding transcript_biotype:protein_coding description:IQ domain-containing protein IQM2
Sequence

ATGATAAAATGCAGGTGGAAGTTGCTTGATTTTGCACTGCTCAAGCGGAACTCGGTGTCA
TTTTTTGACATAGGGAAGCCTGAGACTGCTGTCTCAAAATGGTCCCGGGCAAGGATGAGG
GCCGCCAAGGTTGGAAAGGGTCTCTCCAAGGACGAGAAGGCCCAGAAACTTGCGCTGCAG
CACTGGCTCGAGGCGATTGACCCTCGGCATCGGTATGGCCACAACCTGCACTTCTACTAC
CACCGCTGGCTCCACTGCCAGAGCAAGCAGCCATTCTTCTATTGGTTGGATGTAGGAGAA
GGGAAAGATGTCAACTTAGAGGAGCATTGCCCTAGATTCAAGTTACACAAGCAATGTATC
AAGTACCTTGGCCCTAAAGAAAGGGAAACCTATGAGGTGGTAGTCGAGGACAAGAGGCTG
ATGTACAAGCTGAGCCGTCAGATAGTCGACACGACCAGAAGCGTCAAGGGGACCAAGTGG
ATATTCGTGCTCAGTACATGCAAGACACTTTACATAGGCCAGAAGCAGAAGGGCGTGTTC
CAGCACTCAAGCTTCCTTGCAGGGGGAGCCACATCTGCTGCAGGAAGACTGGTTGTGGAG
GATGGAATTCTCAAGGCTGTGTGGCCTCATAGCGGGCATTACCGGCCGACGGAGCAGAAC
TTCCAGGAGTTCATGAACTTCCTCAAGGAGAGGAATGTAGATCTTAACAACGTGGTGTTG
AGCCCATCAGAAGGTGAAGAAGATGGCGACTTCAGCCTGGCGAGCAGCTACTCTCAGCTG
GACCTGACCCAACTCTGCCAGCAAGAAGACAGCCAAGAACAAGAGGCACAATCTGCGCGA
CGCCATGGCCAAGTCGAAGCCGAAGCCGAAGCTAGGACCTGCAGCCTGGAGCCCAGCCTG
CCATCTACAGAGACCTGCAGCACGCCGGCGACGATCAGGAAGAGCTCCTCAGACAACCGG
CTGCAAGGGAAGCGGCCGCCCAGGCTGCTGATCAGCTCAAACAACATAGCGCCGCTGCCG
CCCACCACGCACAGCAACGCCGGGCCATCGCCCGGCGGGAAGGACGACCTGGACCCGGAC
TCGGCCATGATGGGCGAGTGCCTCGACTTCTGCAAGCGAAACCTGTTCGCGGAGGACGGG
TACGAGGACCGCTACCTGGATGACCTCGCGGAGCTGCCGGAGGCGCTGATCCTGAACCGC
ATCAACTCCAAGCGGGCCATGCACTCGTACCAGCTCGGGAAGCAGCTGTCCTTCCACTGG
AGCACCGGCGCCGGGCCCCGGATCGGGTGCGTCCGTGACTACCCGTCCGAGCTCCAGTTC
CGGGCGCTGGAGGATGTCAGCCTGTCGCCCCGTGGCGGCGGCAGGTCGGTGAGGTTCCCG
TCGCCCAGGCCGGGCGCGCTCACGCCCAACAGCATCCCTGCGGCCAAGTGTGGCTCTCTT
ACGGCGGACGGCGACGGCGTGCACGCGTCGCTCAAGCCCAGGCAGAGGAGTGCCACTTGG
ACTGCGTTCTGA

Peptide Sequence

PEP ID

Zm00001d032981_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:1:245736284:245739878:-1 gene:Zm00001d032981 transcript:Zm00001d032981_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:IQ domain-containing protein IQM2
Sequence

MIKCRWKLLDFALLKRNSVSFFDIGKPETAVSKWSRARMRAAKVGKGLSKDEKAQKLALQ
HWLEAIDPRHRYGHNLHFYYHRWLHCQSKQPFFYWLDVGEGKDVNLEEHCPRFKLHKQCI
KYLGPKERETYEVVVEDKRLMYKLSRQIVDTTRSVKGTKWIFVLSTCKTLYIGQKQKGVF
QHSSFLAGGATSAAGRLVVEDGILKAVWPHSGHYRPTEQNFQEFMNFLKERNVDLNNVVL
SPSEGEEDGDFSLASSYSQLDLTQLCQQEDSQEQEAQSARRHGQVEAEAEARTCSLEPSL
PSTETCSTPATIRKSSSDNRLQGKRPPRLLISSNNIAPLPPTTHSNAGPSPGGKDDLDPD
SAMMGECLDFCKRNLFAEDGYEDRYLDDLAELPEALILNRINSKRAMHSYQLGKQLSFHW
STGAGPRIGCVRDYPSELQFRALEDVSLSPRGGGRSVRFPSPRPGALTPNSIPAAKCGSL
TADGDGVHASLKPRQRSATWTAF

Transcript Sequence

Transcript ID

Zm00001d032981_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:245736284:245739878:-1 gene:Zm00001d032981 gene_biotype:protein_coding transcript_biotype:protein_coding description:IQ domain-containing protein IQM2
Sequence

ACAAAATAGCTCTCTGCCTCACAGCAAGCCTGTGCGTCTCATATTCAAGGAGCCTGCCTC
TGAGGTGGTTGCAACTTGCTTGGGACGAGGATTTGGATTTTGGAGGCAAGATTGGACCGC
AGACTGTGAGATCCATCCAATCCAACAACCGAATCCAATCCAATCCAATCAGAGAAAAAG
AAAAAAGGCGAAAGGCTCGTGTCTGTGTGGCACCACATCTTGCCATCAGGGAAAATGGGG
CTGTCAATCTCGTACCCACCAGACGACTACCTGCCAGCAGTGGAGGACGACATGGGGCGG
CTGTTCATCCGGTCTCTCAGCTTCGACGACATGGAGGCCGCCGCCGATTCGCCTTCGTAT
TCGCCTTCGGCATTGCCCCCCGCCTTTGGCTCCGGGAAGCTGATCATGGAGGGCTCCCTG
GGCTTCTTCGAAAGAAGAGAAGCTGACAGCGTCCAGATGCAGAACGTGCTGTCCATCAGG
AATCCTAAACCTCCTGATAGAGAAGCCTGCAGCAGCGTCAGTCCCGGTGCTGCGACAGCT
ACTTGTGGCTCATCAAGATTCGACCGTCCACCAGATTATGATTACCCCATGGTCGGGATG
AACAGCCCCAGGCACCAGAGCGCGGCCGTCAGGCTGCAGAAGGTGTACAAGAGCTTCAGG
ACGAGGCGGCAGCTTGCGGATTGCGCTGTTCTTGTGGAACAACGATGGTAGGACGACACT
GCGTTGTTGTATGCTATTTATTGGGTTTGGTGATCTTGTTCTTGTCATGAAGCCATCAAG
GTGATGCTTTTTCTGAATTTGATTTTATGATAAAATGCAGGTGGAAGTTGCTTGATTTTG
CACTGCTCAAGCGGAACTCGGTGTCATTTTTTGACATAGGGAAGCCTGAGACTGCTGTCT
CAAAATGGTCCCGGGCAAGGATGAGGGCCGCCAAGGTTGGAAAGGGTCTCTCCAAGGACG
AGAAGGCCCAGAAACTTGCGCTGCAGCACTGGCTCGAGGCGATTGACCCTCGGCATCGGT
ATGGCCACAACCTGCACTTCTACTACCACCGCTGGCTCCACTGCCAGAGCAAGCAGCCAT
TCTTCTATTGGTTGGATGTAGGAGAAGGGAAAGATGTCAACTTAGAGGAGCATTGCCCTA
GATTCAAGTTACACAAGCAATGTATCAAGTACCTTGGCCCTAAAGAAAGGGAAACCTATG
AGGTGGTAGTCGAGGACAAGAGGCTGATGTACAAGCTGAGCCGTCAGATAGTCGACACGA
CCAGAAGCGTCAAGGGGACCAAGTGGATATTCGTGCTCAGTACATGCAAGACACTTTACA
TAGGCCAGAAGCAGAAGGGCGTGTTCCAGCACTCAAGCTTCCTTGCAGGGGGAGCCACAT
CTGCTGCAGGAAGACTGGTTGTGGAGGATGGAATTCTCAAGGCTGTGTGGCCTCATAGCG
GGCATTACCGGCCGACGGAGCAGAACTTCCAGGAGTTCATGAACTTCCTCAAGGAGAGGA
ATGTAGATCTTAACAACGTGGTGTTGAGCCCATCAGAAGGTGAAGAAGATGGCGACTTCA
GCCTGGCGAGCAGCTACTCTCAGCTGGACCTGACCCAACTCTGCCAGCAAGAAGACAGCC
AAGAACAAGAGGCACAATCTGCGCGACGCCATGGCCAAGTCGAAGCCGAAGCCGAAGCTA
GGACCTGCAGCCTGGAGCCCAGCCTGCCATCTACAGAGACCTGCAGCACGCCGGCGACGA
TCAGGAAGAGCTCCTCAGACAACCGGCTGCAAGGGAAGCGGCCGCCCAGGCTGCTGATCA
GCTCAAACAACATAGCGCCGCTGCCGCCCACCACGCACAGCAACGCCGGGCCATCGCCCG
GCGGGAAGGACGACCTGGACCCGGACTCGGCCATGATGGGCGAGTGCCTCGACTTCTGCA
AGCGAAACCTGTTCGCGGAGGACGGGTACGAGGACCGCTACCTGGATGACCTCGCGGAGC
TGCCGGAGGCGCTGATCCTGAACCGCATCAACTCCAAGCGGGCCATGCACTCGTACCAGC
TCGGGAAGCAGCTGTCCTTCCACTGGAGCACCGGCGCCGGGCCCCGGATCGGGTGCGTCC
GTGACTACCCGTCCGAGCTCCAGTTCCGGGCGCTGGAGGATGTCAGCCTGTCGCCCCGTG
GCGGCGGCAGGTCGGTGAGGTTCCCGTCGCCCAGGCCGGGCGCGCTCACGCCCAACAGCA
TCCCTGCGGCCAAGTGTGGCTCTCTTACGGCGGACGGCGACGGCGTGCACGCGTCGCTCA
AGCCCAGGCAGAGGAGTGCCACTTGGACTGCGTTCTGAGGGACATACCATGCATGCATGC
ATGCTGCTTCCTTCAGCTTTTTTTTTTCACAGCATTGTGACGATAAACCGAGGGAAAAGT
GAGATAGCATGCTCCTTCACGTAGACGAGGATAGAAGGATCAGCATTGACAGACATTTGG
CAAACACTGGGTAATGCCATATTGTAATGGTACCTATAGGTTGATGACAAAGCTCTTGCT
GTTT