Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032980_T052
CDS Infomation

cds chromosome:B73_RefGen_v4:1:245700449:245714869:1 gene:Zm00001d032980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 3
Sequence

ATGAAAAAGATCAGTAGAGAGCATCTAGAGCAATTTGGTTCTGCTGGCTTACGTACACTT
TGTCTTGCCTATCGGGATCTTAGTAGGGAGCAATACGAAAGCTGGAACGAGAAGTTTGTA
CAAGCAAAGTCATCTTTACGAGATCGTGATAAGAAGCTTGATGAGGTGGCTGAATTGATT
GAAAAAGACCTTATATTAGTTGGGTGCACAGCTATAGAGGACAAACTGCAAGAAGGGGTG
CCAACCTGCATTGAAACTCTCTCTGCAGCGGGCATAAAAATTTGGGTGTTAACTGGAGAT
AAGATGGAAACAGCGATTAACATTGCATATGCATGTAGCTTGGTAAACAATGACACCAAA
CAGTTCATCATTAGTTCAGAGACAGGCGCTATTAGGGAGGCTGAAGACCGGGGTGACCCT
GTGGAAATTGCACGTGTTATTAAAGATTCAGTAAAACAGAATCTGAAAAGATTTCACGAG
GAAGCCCGGCATTCTTTAATTAGCACCCCTGAAAGGAAGTTGGCTCTCATTATTGATGGT
AGATGCCTAATGTACGCACTGGACCCAACTCTTCGTGTTGATCTTCTTGGATTGAGTCTA
AGTTGCCACTCTGTTATATGCTGCCGAGTTTCTCCGCTGCAGAAGGCACAGGTTACAAGC
TTAGTTAGGAAGGGTGCTGAGAAAATAACTCTCAGCATTGGTGACGGTGCTAATGATGTG
AGTATGATTCAAGCTGCTCATGTTGGGATTGGCATCAGTGGCCAAGAAGGAATGCAAGCT
GTTATGGCTAGTGACTTTGCCATTGCACAGTTTCGTTTTCTTACTGATTTGCTTCTTGTA
CATGGACGATGGTCTTACTTGAGACTGTGCAAGGTTATCACATACTTCTTCTACAAGAAT
CTGACATTTACACTAACTCAGTTCTGGTTCACTTTTCAAACTGGTTTTTCTGGCCAGCGG
TTTTATGATGACTGGTTTCAGTCTCTATATAACGTTATTTTTACTGCGCTACCTGTAATT
ATAGTTGGATTGTTTGATAAGGATGTTAGCGCGTCACTGTCAAAAAAATACCCACAGCTT
TACAAGGAAGGCATCAGGAATTCATTCTTCAAGTGGAGAGTGATTGCAGTGTGGGGTTTC
TTTGCCTTCTATCAGTCAATAGTGTTCTTCTACTTCACTGCAGCTGCAAGTCGGCATGGT
CAGGGTTCATCTGGCAAGATTCTTGGCCTATGGGATGTTAGCACCATGGCATTTACTTGT
GTCGTGGTGACTGTGAATCTCCGCCTTCTCATGGCATGCAACTCTATAACGAGGTGGCAT
TACATAAGTGTGGCGGGCAGTATAGTGGCCTGGTTTATGTTTATTTTCATATACTCTGCA
ATAATGACGTCATTTGACAGACAGGAAAATGTGTATTTTGTGATTTATGTTCTGATGAGC
ACCTTTTTCTTCTATCTGACAATCGTACTTGTTCCGATCATCGCCCTGTTTGGGGATTTC
CTATATCTATCGATCCAAAGGTGGCTCTTCCCCTACGACTACCAAATAATACAGGAGCAA
CACAAGGATGAGCCACACGAGTACAGCAGGGTGCCACTACCAGAGACCAGCCACCTAAGC
CCAGAGGAAGCGAGAAGCTACATGATCTCGATGCTCCCACGGGAGTCATCAAAGCACACT
GGCTTTGCCTTCGACTCCCCAGGATACGAGTCGTTCTTCGCCTCGCAGCAAGGCATCGGC
GTGCCACACAAGCCGTGGGATGTAGCCCGGAGAGCGAGCATGAAACCGCAACGAGCAGGA
AAATCCTAG

Peptide Sequence

PEP ID

Zm00001d032980_P052
PEP Infomation

pep chromosome:B73_RefGen_v4:1:245700449:245714869:1 gene:Zm00001d032980 transcript:Zm00001d032980_T052 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 3
Sequence

MKKISREHLEQFGSAGLRTLCLAYRDLSREQYESWNEKFVQAKSSLRDRDKKLDEVAELI
EKDLILVGCTAIEDKLQEGVPTCIETLSAAGIKIWVLTGDKMETAINIAYACSLVNNDTK
QFIISSETGAIREAEDRGDPVEIARVIKDSVKQNLKRFHEEARHSLISTPERKLALIIDG
RCLMYALDPTLRVDLLGLSLSCHSVICCRVSPLQKAQVTSLVRKGAEKITLSIGDGANDV
SMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRLCKVITYFFYKN
LTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPQL
YKEGIRNSFFKWRVIAVWGFFAFYQSIVFFYFTAAASRHGQGSSGKILGLWDVSTMAFTC
VVVTVNLRLLMACNSITRWHYISVAGSIVAWFMFIFIYSAIMTSFDRQENVYFVIYVLMS
TFFFYLTIVLVPIIALFGDFLYLSIQRWLFPYDYQIIQEQHKDEPHEYSRVPLPETSHLS
PEEARSYMISMLPRESSKHTGFAFDSPGYESFFASQQGIGVPHKPWDVARRASMKPQRAG
KS

Transcript Sequence

Transcript ID

Zm00001d032980_T052
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:245700449:245714869:1 gene:Zm00001d032980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 3
Sequence

AGAAAGCGACAATCGGTGGTTTGCCGGTTCACAAATGGAAGACTAGTTCTCTATTGCAAG
GGTGCTGATAATGTTGTATATGAACGATTGGCTGATGGAAATCATGATATGAAAAAGATC
AGTAGAGAGCATCTAGAGCAATTTGGTTCTGCTGGCTTACGTACACTTTGTCTTGCCTAT
CGGGATCTTAGTAGGGAGCAATACGAAAGCTGGAACGAGAAGTTTGTACAAGCAAAGTCA
TCTTTACGAGATCGTGATAAGAAGCTTGATGAGGTGGCTGAATTGATTGAAAAAGACCTT
ATATTAGTTGGGTGCACAGCTATAGAGGACAAACTGCAAGAAGGGGTGCCAACCTGCATT
GAAACTCTCTCTGCAGCGGGCATAAAAATTTGGGTGTTAACTGGAGATAAGATGGAAACA
GCGATTAACATTGCATATGCATGTAGCTTGGTAAACAATGACACCAAACAGTTCATCATT
AGTTCAGAGACAGGCGCTATTAGGGAGGCTGAAGACCGGGGTGACCCTGTGGAAATTGCA
CGTGTTATTAAAGATTCAGTAAAACAGAATCTGAAAAGATTTCACGAGGAAGCCCGGCAT
TCTTTAATTAGCACCCCTGAAAGGAAGTTGGCTCTCATTATTGATGGTAGATGCCTAATG
TACGCACTGGACCCAACTCTTCGTGTTGATCTTCTTGGATTGAGTCTAAGTTGCCACTCT
GTTATATGCTGCCGAGTTTCTCCGCTGCAGAAGGCACAGGTTACAAGCTTAGTTAGGAAG
GGTGCTGAGAAAATAACTCTCAGCATTGGTGACGGTGCTAATGATGTGAGTATGATTCAA
GCTGCTCATGTTGGGATTGGCATCAGTGGCCAAGAAGGAATGCAAGCTGTTATGGCTAGT
GACTTTGCCATTGCACAGTTTCGTTTTCTTACTGATTTGCTTCTTGTACATGGACGATGG
TCTTACTTGAGACTGTGCAAGGTTATCACATACTTCTTCTACAAGAATCTGACATTTACA
CTAACTCAGTTCTGGTTCACTTTTCAAACTGGTTTTTCTGGCCAGCGGTTTTATGATGAC
TGGTTTCAGTCTCTATATAACGTTATTTTTACTGCGCTACCTGTAATTATAGTTGGATTG
TTTGATAAGGATGTTAGCGCGTCACTGTCAAAAAAATACCCACAGCTTTACAAGGAAGGC
ATCAGGAATTCATTCTTCAAGTGGAGAGTGATTGCAGTGTGGGGTTTCTTTGCCTTCTAT
CAGTCAATAGTGTTCTTCTACTTCACTGCAGCTGCAAGTCGGCATGGTCAGGGTTCATCT
GGCAAGATTCTTGGCCTATGGGATGTTAGCACCATGGCATTTACTTGTGTCGTGGTGACT
GTGAATCTCCGCCTTCTCATGGCATGCAACTCTATAACGAGGTGGCATTACATAAGTGTG
GCGGGCAGTATAGTGGCCTGGTTTATGTTTATTTTCATATACTCTGCAATAATGACGTCA
TTTGACAGACAGGAAAATGTGTATTTTGTGATTTATGTTCTGATGAGCACCTTTTTCTTC
TATCTGACAATCGTACTTGTTCCGATCATCGCCCTGTTTGGGGATTTCCTATATCTATCG
ATCCAAAGGTGGCTCTTCCCCTACGACTACCAAATAATACAGGAGCAACACAAGGATGAG
CCACACGAGTACAGCAGGGTGCCACTACCAGAGACCAGCCACCTAAGCCCAGAGGAAGCG
AGAAGCTACATGATCTCGATGCTCCCACGGGAGTCATCAAAGCACACTGGCTTTGCCTTC
GACTCCCCAGGATACGAGTCGTTCTTCGCCTCGCAGCAAGGCATCGGCGTGCCACACAAG
CCGTGGGATGTAGCCCGGAGAGCGAGCATGAAACCGCAACGAGCAGGAAAATCCTAGTCG
GGCGAACACCTCTCCGCTGTGTAAAGTCTTGTATATCTGGATGAAAAGTAGGCAACGGTC
CGTTTGGCTGTTAAACAATCATGTAGGGATACTTGGTAGATAAAACCAAAGGGGTATTGG
ACATGCAGTTAGGAATTTTAGTTTCTG