Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d032900_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:242190467:242193230:-1 gene:Zm00001d032900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGACGCTCTACCGTCGTGTCCTGCTCCTCCGTCGCCTCTCCCACCTCCACCCCTCGCCC GTTCCGGCCATCTGCTCCTCACCACCACCCACCCTCGCGGGGCTGCTCACCCCCATGGGG CGCCGCCACTTCGCCTTCTCGTCCGCCGAGGAGGCCGCCGCCGAGCGCCGCCGCCGCAAG CGCCGTCTCCGCATCGAGCCTCCAATCAACGCCCTCCGCCGCGGGCCACCTCCCCCACGG GACCCCAACGCGCCCCGCCTCCCAGACACCACCTCCGCGCTCACTGGCCCGCGCCTCAGC CTCCACAACCGCGTCCAGTCCCTCATCCGCTCTGGTGATCTAGACGGCGCCTCAGCCGCT GCCCGCGCCGCCGTCTCCTCGCGCGTCCGGCCCACCGTCTTCACCTCCAACGCCGTGGCC GCGGCCATGGTCCGCGCCGCCCGCCACGATGACGCTGTCGCCCTCTTTGATTTCTTCTTC CGCCGCTCTAATATCGTCCCCAACATCGTCTCCTACAACACCCTCATCCTCGCACACTGC GAGGCCGACCGCGTCGACACCGCGCTGCAGGTCTACCAAGACATGCTCGCGTCTGCGCCC TTCTCCCCCTCTGCCGTCACCTTCCGCCACCTCACCAAGGGTCTCGTCGCTGCTGGCCGC ATCGGTGACGCCCTTGACCTCCTCCGCGAGATGCTCAGCCGCAGCGCTGGCGCCGACTCA CTCGTCTACAACAACCTCATCGCTGGCTACATCGACCTCAACGACTGGGACAGGGCCTTC GAGCTCTTCAACGAGCTCGCAGAGAGGTGCCTTGTCTATGACGGTGTTGTACACACCACG TTCATGGAGGGCTACTGGAGGCAGGGCAAGGACAAGGAGGCCATGGACAACTACCAGTCC CTTCTTGATCGGGGCTTCAAGATGACGCCGGCCACCTGCAACGTGCTGCTCGAGACACTC TTCAAGCACGGCAAGCACAAGGAGGCCAACGACCTATGGGAGACCATGATTGACAACCAC ACCCCGCCAAGCTTCATCGGCATCAACGCAGAGTCCTACAATGTCATGGTTAACCAGTGC TTCAGGGAGGGCAAGTTTCAGGAGGCGATTGAGGTCTTCCACCGCCAGCCCAGGAAGAAT GTCCAAATGGACGTTGGTTGCTTCAACAACATCATTGGCAAACTCTGTGAGAATGGGATG CTAGCTGAGGCAAAAAAGCTCTTTGAGGAGATGGAGAAGAAGTCAGTACTTCCAGATGTG TACACCTACACTTACCTTGTTGACTCATGCTTCAAGGAAGGCTATGTGGAAGATACACTG GAATATTTCTATAAAATGGCAGATGAGAAACCACATGGGCCAAAGTTCAATATTGGTTTC TTTAACCGCATGTTTGAAGGGCTTACAGAAGCTGGCCGTATTGATGACGCCTTGAAGGTG TACGGGAGGATGCCTGACAAGGAAATCAAACCAAACATGACCACTTTTGAAATCCTTGTC AAAGCCTTGTGCAAAGAAGAGGACTTGGATCAAGCAAGGGGCCTAGTGATGGACATGGCA AGAGGTGGTATTGTGCCTCCTCAAGGGTTCCGTGAGTCTGTTGTTAACTTTTTCAAGGAG GCTGGTCGACAGGAAGAAATTGAGAAAGCTTTTGAAGAAAAACCTATGCCAACACCTCAG CCTAGAACAGAGTATCAGCCTAGGACTGAGTATCACTCTCGCAATGCAGACGGTGCTGCT CAAATAAAACAACCTGGCTTTAGCTCTGCTCCAGCGGTGGGACCTGAATTTCTTCACTCT CAGCCACAACAATCCACACTTAGTAACACTCCAAATCAGCAGCCTGAGTTTGGCTCATCT CGATCATGGAATTCAGGTTTCGGTGCTCCTCAAGCGCAGCCTGGATATGGTGCACCTCAG CCTGTACAGACACCACAGCCACAGTTTGGTGCTTCTCGGGGTGAACCAGGATATAGCAAC ATAGGAAATCAGCATGTTCAGTTTCGCTCTCCCCAGAGAGAACCAAAATTTAGCAACCAT CCACCACAAGTTGGGTATGGTGCCCAATTGCCTCAGTCAGGATATCGCTTTGAGCCCCAA CAAGAACAGGTTGGATTTGGAAATCAAGTAGCACAACCTGCACATGTGGCTTCAAGACAA CCCTCATATGACACCCGCTGGAGCTCAAGAGATTATGGATCAACCCAAGGGCAACTGGGA TATGGTGGTCCTCAAGCGCAGTCATATGAATCTCAGTTACCACATCACCAGGGAAGTTTT GGTATGCCACATTTCCAAAATAACAATGGCTTCTATCGATACAACCCTGGATATGGCCCA TCTAATGGTTCGCAGGGATTTGATGCTCCCCATGGTGATTCTAAAACTGCTGAGAGTACC ACTCCTGAAGACCGGCAACAAGCAGCATTTCTGAAAGCATGA

Peptide Sequence

PEP ID	Zm00001d032900_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:242190467:242193230:-1 gene:Zm00001d032900 transcript:Zm00001d032900_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MTLYRRVLLLRRLSHLHPSPVPAICSSPPPTLAGLLTPMGRRHFAFSSAEEAAAERRRRK RRLRIEPPINALRRGPPPPRDPNAPRLPDTTSALTGPRLSLHNRVQSLIRSGDLDGASAA ARAAVSSRVRPTVFTSNAVAAAMVRAARHDDAVALFDFFFRRSNIVPNIVSYNTLILAHC EADRVDTALQVYQDMLASAPFSPSAVTFRHLTKGLVAAGRIGDALDLLREMLSRSAGADS LVYNNLIAGYIDLNDWDRAFELFNELAERCLVYDGVVHTTFMEGYWRQGKDKEAMDNYQS LLDRGFKMTPATCNVLLETLFKHGKHKEANDLWETMIDNHTPPSFIGINAESYNVMVNQC FREGKFQEAIEVFHRQPRKNVQMDVGCFNNIIGKLCENGMLAEAKKLFEEMEKKSVLPDV YTYTYLVDSCFKEGYVEDTLEYFYKMADEKPHGPKFNIGFFNRMFEGLTEAGRIDDALKV YGRMPDKEIKPNMTTFEILVKALCKEEDLDQARGLVMDMARGGIVPPQGFRESVVNFFKE AGRQEEIEKAFEEKPMPTPQPRTEYQPRTEYHSRNADGAAQIKQPGFSSAPAVGPEFLHS QPQQSTLSNTPNQQPEFGSSRSWNSGFGAPQAQPGYGAPQPVQTPQPQFGASRGEPGYSN IGNQHVQFRSPQREPKFSNHPPQVGYGAQLPQSGYRFEPQQEQVGFGNQVAQPAHVASRQ PSYDTRWSSRDYGSTQGQLGYGGPQAQSYESQLPHHQGSFGMPHFQNNNGFYRYNPGYGP SNGSQGFDAPHGDSKTAESTTPEDRQQAAFLKA

Transcript Sequence

Transcript ID	Zm00001d032900_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:242190467:242193230:-1 gene:Zm00001d032900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGACGCTCTACCGTCGTGTCCTGCTCCTCCGTCGCCTCTCCCACCTCCACCCCTCGCCC GTTCCGGCCATCTGCTCCTCACCACCACCCACCCTCGCGGGGCTGCTCACCCCCATGGGG CGCCGCCACTTCGCCTTCTCGTCCGCCGAGGAGGCCGCCGCCGAGCGCCGCCGCCGCAAG CGCCGTCTCCGCATCGAGCCTCCAATCAACGCCCTCCGCCGCGGGCCACCTCCCCCACGG GACCCCAACGCGCCCCGCCTCCCAGACACCACCTCCGCGCTCACTGGCCCGCGCCTCAGC CTCCACAACCGCGTCCAGTCCCTCATCCGCTCTGGTGATCTAGACGGCGCCTCAGCCGCT GCCCGCGCCGCCGTCTCCTCGCGCGTCCGGCCCACCGTCTTCACCTCCAACGCCGTGGCC GCGGCCATGGTCCGCGCCGCCCGCCACGATGACGCTGTCGCCCTCTTTGATTTCTTCTTC CGCCGCTCTAATATCGTCCCCAACATCGTCTCCTACAACACCCTCATCCTCGCACACTGC GAGGCCGACCGCGTCGACACCGCGCTGCAGGTCTACCAAGACATGCTCGCGTCTGCGCCC TTCTCCCCCTCTGCCGTCACCTTCCGCCACCTCACCAAGGGTCTCGTCGCTGCTGGCCGC ATCGGTGACGCCCTTGACCTCCTCCGCGAGATGCTCAGCCGCAGCGCTGGCGCCGACTCA CTCGTCTACAACAACCTCATCGCTGGCTACATCGACCTCAACGACTGGGACAGGGCCTTC GAGCTCTTCAACGAGCTCGCAGAGAGGTGCCTTGTCTATGACGGTGTTGTACACACCACG TTCATGGAGGGCTACTGGAGGCAGGGCAAGGACAAGGAGGCCATGGACAACTACCAGTCC CTTCTTGATCGGGGCTTCAAGATGACGCCGGCCACCTGCAACGTGCTGCTCGAGACACTC TTCAAGCACGGCAAGCACAAGGAGGCCAACGACCTATGGGAGACCATGATTGACAACCAC ACCCCGCCAAGCTTCATCGGCATCAACGCAGAGTCCTACAATGTCATGGTTAACCAGTGC TTCAGGGAGGGCAAGTTTCAGGAGGCGATTGAGGTCTTCCACCGCCAGCCCAGGAAGAAT GTCCAAATGGACGTTGGTTGCTTCAACAACATCATTGGCAAACTCTGTGAGAATGGGATG CTAGCTGAGGCAAAAAAGCTCTTTGAGGAGATGGAGAAGAAGTCAGTACTTCCAGATGTG TACACCTACACTTACCTTGTTGACTCATGCTTCAAGGAAGGCTATGTGGAAGATACACTG GAATATTTCTATAAAATGGCAGATGAGAAACCACATGGGCCAAAGTTCAATATTGGTTTC TTTAACCGCATGTTTGAAGGGCTTACAGAAGCTGGCCGTATTGATGACGCCTTGAAGGTG TACGGGAGGATGCCTGACAAGGAAATCAAACCAAACATGACCACTTTTGAAATCCTTGTC AAAGCCTTGTGCAAAGAAGAGGACTTGGATCAAGCAAGGGGCCTAGTGATGGACATGGCA AGAGGTGGTATTGTGCCTCCTCAAGGGTTCCGTGAGTCTGTTGTTAACTTTTTCAAGGAG GCTGGTCGACAGGAAGAAATTGAGAAAGCTTTTGAAGAAAAACCTATGCCAACACCTCAG CCTAGAACAGAGTATCAGCCTAGGACTGAGTATCACTCTCGCAATGCAGACGGTGCTGCT CAAATAAAACAACCTGGCTTTAGCTCTGCTCCAGCGGTGGGACCTGAATTTCTTCACTCT CAGCCACAACAATCCACACTTAGTAACACTCCAAATCAGCAGCCTGAGTTTGGCTCATCT CGATCATGGAATTCAGGTTTCGGTGCTCCTCAAGCGCAGCCTGGATATGGTGCACCTCAG CCTGTACAGACACCACAGCCACAGTTTGGTGCTTCTCGGGGTGAACCAGGATATAGCAAC ATAGGAAATCAGCATGTTCAGTTTCGCTCTCCCCAGAGAGAACCAAAATTTAGCAACCAT CCACCACAAGTTGGGTATGGTGCCCAATTGCCTCAGTCAGGATATCGCTTTGAGCCCCAA CAAGAACAGGTTGGATTTGGAAATCAAGTAGCACAACCTGCACATGTGGCTTCAAGACAA CCCTCATATGACACCCGCTGGAGCTCAAGAGATTATGGATCAACCCAAGGGCAACTGGGA TATGGTGGTCCTCAAGCGCAGTCATATGAATCTCAGTTACCACATCACCAGGGAAGTTTT GGTATGCCACATTTCCAAAATAACAATGGCTTCTATCGATACAACCCTGGATATGGCCCA TCTAATGGTTCGCAGGGATTTGATGCTCCCCATGGTGATTCTAAAACTGCTGAGAGTACC ACTCCTGAAGACCGGCAACAAGCAGCATTTCTGAAAGCATGAGGTCCAAACATATTTTGG CTCCAAATCAAAAGGTTTCTCAGCCACAAAATGAATTAGGTCTTCAGATATTAAGATATC AATGAATAATTTTGAATCGGACTTCACTATTGTTCCAATGGGTCTCACTGCTGTACCTTT TAACTGAAATCTTCTGCTGTTTCTCATACATGATATGGCAGCATGAGGAGTTGTTTTATC AGTTAGCATATAGCCATATATGCATGTGGTTCAAAAATTGAAATATGTCCTTTTGTTCTC AGGATGAACACTTTTACTGATTGTTTAAGTTGGAACTATTAGTCGCCATGCATGGTGTTT TGGA