Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032894_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:241896122:241913620:1 gene:Zm00001d032894 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRP6-like 2
Sequence

ATGCAGATTTCAACAAGAACAGAGGACTTTATTGTTGACACTCTTAAGCTTCGTAAATAT
CTTGGTGATTATCTAAGAGAGTTTTTCAGAGATCCAACCAAGAAAAAGAAACAGGTAATG
CATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGTGCAAC
CTTTTTGACACAGGCCAGGCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGGAACAT
CTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAATACCAAGCTGCAGATTGGAGA
TTGAGGCCCCTTCCTGATGAAATGATCAAATATGCTAGAGAGGATACACACTATCTGCTA
TATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATGATCTT
CTTTTAGAGGTTTGCAAGCGCAGCAACGAAATTTGCTTGCAACTGTATGAGAAGGAGCAG
CTGACTGATACATCATATCTACATATACATGGGTTGAAAGAAAACGAGCTGAATGCAACG
CAGCTGTCAGTTCTTTCCAGTCTATATCGATGGAGAGATGGCATTGCCCGTGCTGAGGAT
GAGAGCACTGGCTATATATTACCCAATAAGACTCTACTTGAGATAGCAAAGGAGATGCCT
GTGACAAGTGGGAAGTTGAAAAGAATGATTAAATCAAGAAATTCGATTTTGGAACGAAAT
CTCAACCATGTTATTAACAATATAAGGGATGCCATAGCAGCTTCTGGTGCTTTTGAAAGT
ATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGTTAACATTGGCAGATGTGAAGAAC
AGCAGTGAGGACACTGAAATGATTCCTGCTGTTGATGTTGATAACATTGAAGATCCGAGT
GATGAATCTGCTGTAGTTCCTGCAGTGATTACAAATGTCGGTGCTGCTCCCTGTATTACA
AGCGAAGCTTCCTTGGGTAATATGCATTTAGAGGACCCTGTGCCTAAAACAAAGGACTCG
GGTGCTTCATCAGGGTTTACTGGACTGACAGACAACAAAAAGCTGAGCAATGACCAGCAG
CAAGCAGCAAAGGCTACTGTTCAAGTATCAAAGAGGCCTACAGCTTTTGGAGCTCTGTTT
GGAAAGGCAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGGGT
AAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATCATTTCTCAGGT
GGTGCAAAACTTTCATCAGCCGCCCTTCCAGCGAAAGAATCGTTGCATTCTGAACCAGAC
AGCATCCAACACAGTGATCCAGCTTGTCAGTTGGAAGAAGTGATACAGTTGGACATGGGA
ACAGACGAGCAACAACCACCAGAAAATGGCAACGAGGATGATGGACACTGTGAGACTGAA
GACACGGAGATGTCAAAGTCCCCTTCAGGTGACCCGTCTGTTACCGAGCAACGATTCCGA
TCACTCAACGAAGAAAGAAACGTTAAGCAGAACCAGAAGACACCTCGAGAATTCGAATTT
AGTGTTCCGGTGGTGCCTTTTGATTATGCCGAAGCCAGAAAGAATCTCGTGTCTAGTTTG
CCTAAAGCTGAGAGGAGAAAGGACGATGCCGTTGCCAGGGCTATAAATACAGACGCTGGA
GATAAGCAGAGGGGTTCAAAAAAGCCACCAGGTGGGGGAGAGAACGAGGGAAATTTCCAG
CATCCACGAAGACGGCAGGCTTTCCCGCCTTCAGGCAATAGAAATGCTACGTATCACCAG
TAG

Peptide Sequence

PEP ID

Zm00001d032894_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:241896122:241913620:1 gene:Zm00001d032894 transcript:Zm00001d032894_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRP6-like 2
Sequence

MQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKKQVMHGAGRDIIWLQRDFSIYVCN
LFDTGQASKVLQMDRNSLEHLLHHFCGVAANKEYQAADWRLRPLPDEMIKYAREDTHYLL
YIYDLMRLRLVNGSSCENDLLLEVCKRSNEICLQLYEKEQLTDTSYLHIHGLKENELNAT
QLSVLSSLYRWRDGIARAEDESTGYILPNKTLLEIAKEMPVTSGKLKRMIKSRNSILERN
LNHVINNIRDAIAASGAFESIVEQLKKGKLEELTLADVKNSSEDTEMIPAVDVDNIEDPS
DESAVVPAVITNVGAAPCITSEASLGNMHLEDPVPKTKDSGASSGFTGLTDNKKLSNDQQ
QAAKATVQVSKRPTAFGALFGKAAAGRRPDLFLGFSNVQGKTKVDKITSSVVLPFHHFSG
GAKLSSAALPAKESLHSEPDSIQHSDPACQLEEVIQLDMGTDEQQPPENGNEDDGHCETE
DTEMSKSPSGDPSVTEQRFRSLNEERNVKQNQKTPREFEFSVPVVPFDYAEARKNLVSSL
PKAERRKDDAVARAINTDAGDKQRGSKKPPGGGENEGNFQHPRRRQAFPPSGNRNATYHQ

Transcript Sequence

Transcript ID

Zm00001d032894_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:241896122:241913620:1 gene:Zm00001d032894 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RRP6-like 2
Sequence

CTTTTACATTTGTTGAAGACCTGAAAACCTTGGAGGTGCTAGCCACAAAGCTGAAGGATG
CAACTGAGTTTGCTGTCGATTTGGAACACAACCATTATAGGTCGTTTCAGGGTTTGACAT
GCTTGATGCAGATTTCAACAAGAACAGAGGACTTTATTGTTGACACTCTTAAGCTTCGTA
AATATCTTGGTGATTATCTAAGAGAGTTTTTCAGAGATCCAACCAAGAAAAAGAAACAGG
TAATGCATGGTGCAGGTCGTGATATAATATGGCTTCAACGAGACTTCAGCATATATGTGT
GCAACCTTTTTGACACAGGCCAGGCTTCAAAGGTCTTACAGATGGACCGCAACAGCTTGG
AACATCTTTTGCACCATTTCTGTGGAGTAGCTGCAAATAAAGAATACCAAGCTGCAGATT
GGAGATTGAGGCCCCTTCCTGATGAAATGATCAAATATGCTAGAGAGGATACACACTATC
TGCTATATATATATGACCTGATGAGATTGAGACTAGTGAATGGGTCATCATGTGAAAATG
ATCTTCTTTTAGAGGTTTGCAAGCGCAGCAACGAAATTTGCTTGCAACTGTATGAGAAGG
AGCAGCTGACTGATACATCATATCTACATATACATGGGTTGAAAGAAAACGAGCTGAATG
CAACGCAGCTGTCAGTTCTTTCCAGTCTATATCGATGGAGAGATGGCATTGCCCGTGCTG
AGGATGAGAGCACTGGCTATATATTACCCAATAAGACTCTACTTGAGATAGCAAAGGAGA
TGCCTGTGACAAGTGGGAAGTTGAAAAGAATGATTAAATCAAGAAATTCGATTTTGGAAC
GAAATCTCAACCATGTTATTAACAATATAAGGGATGCCATAGCAGCTTCTGGTGCTTTTG
AAAGTATAGTGGAGCAGCTGAAGAAGGGAAAACTGGAAGAGTTAACATTGGCAGATGTGA
AGAACAGCAGTGAGGACACTGAAATGATTCCTGCTGTTGATGTTGATAACATTGAAGATC
CGAGTGATGAATCTGCTGTAGTTCCTGCAGTGATTACAAATGTCGGTGCTGCTCCCTGTA
TTACAAGCGAAGCTTCCTTGGGTAATATGCATTTAGAGGACCCTGTGCCTAAAACAAAGG
ACTCGGGTGCTTCATCAGGGTTTACTGGACTGACAGACAACAAAAAGCTGAGCAATGACC
AGCAGCAAGCAGCAAAGGCTACTGTTCAAGTATCAAAGAGGCCTACAGCTTTTGGAGCTC
TGTTTGGAAAGGCAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTC
AGGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATCATTTCT
CAGGTGGTGCAAAACTTTCATCAGCCGCCCTTCCAGCGAAAGAATCGTTGCATTCTGAAC
CAGACAGCATCCAACACAGTGATCCAGCTTGTCAGTTGGAAGAAGTGATACAGTTGGACA
TGGGAACAGACGAGCAACAACCACCAGAAAATGGCAACGAGGATGATGGACACTGTGAGA
CTGAAGACACGGAGATGTCAAAGTCCCCTTCAGGTGACCCGTCTGTTACCGAGCAACGAT
TCCGATCACTCAACGAAGAAAGAAACGTTAAGCAGAACCAGAAGACACCTCGAGAATTCG
AATTTAGTGTTCCGGTGGTGCCTTTTGATTATGCCGAAGCCAGAAAGAATCTCGTGTCTA
GTTTGCCTAAAGCTGAGAGGAGAAAGGACGATGCCGTTGCCAGGGCTATAAATACAGACG
CTGGAGATAAGCAGAGGGGTTCAAAAAAGCCACCAGGTGGGGGAGAGAACGAGGGAAATT
TCCAGCATCCACGAAGACGGCAGGCTTTCCCGCCTTCAGGCAATAGAAATGCTACGTATC
ACCAGTAGCAAGTTGAGATGTATAACTGGCGAATTGGATTATTCCAAAATTGTGATAAAA
GAGTACCCTACGTGTTGTATATTTGGACTGGGGATATCTCGGACTCATGAGAAACCACCG
AGACTGCTACTGCACCGCGGTGCCCTGACGTGTTGCTAACACGTGCTAGGTGACTGAGAA
TAGTTGGGTATTGCGTTATTTTTTTTAATATGTTCTGAACATGAGAATGCCCTAGTATTT
CATTAGGATGTGTACATTT