Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032703_T021
CDS Infomation

cds chromosome:B73_RefGen_v4:1:235316446:235322111:-1 gene:Zm00001d032703 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT3
Sequence

ATGAGGGGGAGAAATGACTCCGGGAACAGCAAGCCGGTTGTGCTGTGCTGTGTGATGATC
GTGTGCCTATGCCTCCTCTTCTTGTATTTCTCGGGCTCCAATGGACAGGCTGGGAGCACC
GCATTTGAGTACGGGACCAAATTCTCACGGTCACTTGGATGGGGCAGTGATGATGGTTCT
GAAGAGTCCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCTAAGAGCTTTCTTGTG
TGTGATGACCGGCACTCTGAGCTGATCCCCTGCTTGGATCGGAACTTGATATATCAAATG
AGGCTGAAGCTGGATTTAAACCTGATGGAGCACTATGAGAGGCATTGCCCTCCACCTGAA
AGGCGTTTTAATTGCTTGATTCCTCCACCACATGGCTATAAGGTCCCTATAAAATGGCCA
AAAAGTCGTGATGTAGTATGGAAAGCAAACATTCCACACACTCACCTTGCAAAAGAGAAG
TCAGACCAGAACTGGATGGTTGAAGCTGGTGAAAAAATCAAGTTTCCAGGTGGTGGGACC
CATTTTCACCATGGAGCTGACAAATACATATCAAATATTGCAAATATGCTAAATTTCAAA
GATAACAATATAAACAATGAGGGGATGCTTCGTACAGTTCTTGATGTTGGTTGTGGAGTT
GCTAGTTTCGGAGGATACCTTCTTTCTTCTAATGTGATAGCAATGTCTTTGGCACCAAAC
GACGTGCATCAGAATCAGATTCAGTTTGCACTCGAAAGAGGAATCCCTGCATATCTTGGT
GTTTTGGGAACAAAAAGGCTTCCATACCCGAGTAGATCATTTGAACTAGCCCATTGTTCA
CGTTGTAGGATCGACTGGCTTCAAAGAGATGGGATTCTTCTGCTCGAACTAGACAGATTG
CTACGGCCTGGAGGTTATTTTGCTTACTCCTCTCCTGAAGCATATGCACAAGATGAGGAA
GATCTCCGAATCTGGAAAGAAATGAGTGCCCTTGTAGAAAGGATGTGCTGGAAAATTGCA
GAGAAAAGAAACCAAACTGTTATTTGGGTGAAACCCCTGAACAATGATTGTTACAAGAGA
CGAGCACATGGTACAACGCCACCTCTATGCAAAAGTGGCGATGATCCAGATTCAGTATGG
GGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACAAATGCACAGAGATGGGGGA
AGTGGGCTAGCTCCCTGGCCTGCTCGATTAACAACCCCGCCTCCCCGTCTTGCTGATTTG
TATGTTACTGCTGACACATTTGAAAAGGACACGGAAATGTGGCAGCAACGAGTAGAAAAA
TATTGGAGTTTGTTGGGCCCAAAGGTAAAACCAGACACTATTAGAAACATCATGGACATG
AAAGCAAATTTTGGGTCATTTGCTGCTGCACTCAAGGAAAAAGACGTATGGGTGATGAAT
GTTGTGCCACATGATGGACCAAGCACCCTCAAGATAATCTATGATAGAGGGCTGATAGGC
AGCAATCATGACTGGTATGTGTTAAGCACCTATAAATTTATCCATTGTTATTATTCAAGG
GCAGGCCTGGTGCAGTGGTGTGCCATGCTTTGTGCCCTTACGTTTTAG

Peptide Sequence

PEP ID

Zm00001d032703_P021
PEP Infomation

pep chromosome:B73_RefGen_v4:1:235316446:235322111:-1 gene:Zm00001d032703 transcript:Zm00001d032703_T021 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT3
Sequence

MRGRNDSGNSKPVVLCCVMIVCLCLLFLYFSGSNGQAGSTAFEYGTKFSRSLGWGSDDGS
EESIFGTGDADDVKPKSFLVCDDRHSELIPCLDRNLIYQMRLKLDLNLMEHYERHCPPPE
RRFNCLIPPPHGYKVPIKWPKSRDVVWKANIPHTHLAKEKSDQNWMVEAGEKIKFPGGGT
HFHHGADKYISNIANMLNFKDNNINNEGMLRTVLDVGCGVASFGGYLLSSNVIAMSLAPN
DVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRL
LRPGGYFAYSSPEAYAQDEEDLRIWKEMSALVERMCWKIAEKRNQTVIWVKPLNNDCYKR
RAHGTTPPLCKSGDDPDSVWGVPMEACITPYPEQMHRDGGSGLAPWPARLTTPPPRLADL
YVTADTFEKDTEMWQQRVEKYWSLLGPKVKPDTIRNIMDMKANFGSFAAALKEKDVWVMN
VVPHDGPSTLKIIYDRGLIGSNHDWYVLSTYKFIHCYYSRAGLVQWCAMLCALTF

Transcript Sequence

Transcript ID

Zm00001d032703_T021
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:235316446:235322111:-1 gene:Zm00001d032703 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable methyltransferase PMT3
Sequence

ACCCACATTCGCTCGCTCTACCCGACTACCCCGCAAGTCGAGGCCTTCCGCTGGCTCTCG
CTCGCTCGCTCGCCCCGCGACTGGTTGCCTCTCCGCCCCGACCCTGCCCTGAGACCGGAG
ACGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGATACGATCTGTGACTGAGAGGGGAGG
AATTCCAGTCAGTCGTTTATGAATCCTGGGGCCTGTGCTTACTAGAGGGAGGGCAAGGCA
AGTTAGGATCCGAGATGAGGGGGAGAAATGACTCCGGGAACAGCAAGCCGGTTGTGCTGT
GCTGTGTGATGATCGTGTGCCTATGCCTCCTCTTCTTGTATTTCTCGGGCTCCAATGGAC
AGGCTGGGAGCACCGCATTTGAGTACGGGACCAAATTCTCACGGTCACTTGGATGGGGCA
GTGATGATGGTTCTGAAGAGTCCATTTTTGGAACCGGGGATGCAGATGATGTCAAGCCTA
AGAGCTTTCTTGTGTGTGATGACCGGCACTCTGAGCTGATCCCCTGCTTGGATCGGAACT
TGATATATCAAATGAGGCTGAAGCTGGATTTAAACCTGATGGAGCACTATGAGAGGCATT
GCCCTCCACCTGAAAGGCGTTTTAATTGCTTGATTCCTCCACCACATGGCTATAAGGTCC
CTATAAAATGGCCAAAAAGTCGTGATGTAGTATGGAAAGCAAACATTCCACACACTCACC
TTGCAAAAGAGAAGTCAGACCAGAACTGGATGGTTGAAGCTGGTGAAAAAATCAAGTTTC
CAGGTGGTGGGACCCATTTTCACCATGGAGCTGACAAATACATATCAAATATTGCAAATA
TGCTAAATTTCAAAGATAACAATATAAACAATGAGGGGATGCTTCGTACAGTTCTTGATG
TTGGTTGTGGAGTTGCTAGTTTCGGAGGATACCTTCTTTCTTCTAATGTGATAGCAATGT
CTTTGGCACCAAACGACGTGCATCAGAATCAGATTCAGTTTGCACTCGAAAGAGGAATCC
CTGCATATCTTGGTGTTTTGGGAACAAAAAGGCTTCCATACCCGAGTAGATCATTTGAAC
TAGCCCATTGTTCACGTTGTAGGATCGACTGGCTTCAAAGAGATGGGATTCTTCTGCTCG
AACTAGACAGATTGCTACGGCCTGGAGGTTATTTTGCTTACTCCTCTCCTGAAGCATATG
CACAAGATGAGGAAGATCTCCGAATCTGGAAAGAAATGAGTGCCCTTGTAGAAAGGATGT
GCTGGAAAATTGCAGAGAAAAGAAACCAAACTGTTATTTGGGTGAAACCCCTGAACAATG
ATTGTTACAAGAGACGAGCACATGGTACAACGCCACCTCTATGCAAAAGTGGCGATGATC
CAGATTCAGTATGGGGAGTGCCAATGGAAGCTTGCATTACTCCGTATCCTGAACAAATGC
ACAGAGATGGGGGAAGTGGGCTAGCTCCCTGGCCTGCTCGATTAACAACCCCGCCTCCCC
GTCTTGCTGATTTGTATGTTACTGCTGACACATTTGAAAAGGACACGGAAATGTGGCAGC
AACGAGTAGAAAAATATTGGAGTTTGTTGGGCCCAAAGGTAAAACCAGACACTATTAGAA
ACATCATGGACATGAAAGCAAATTTTGGGTCATTTGCTGCTGCACTCAAGGAAAAAGACG
TATGGGTGATGAATGTTGTGCCACATGATGGACCAAGCACCCTCAAGATAATCTATGATA
GAGGGCTGATAGGCAGCAATCATGACTGGTATGTGTTAAGCACCTATAAATTTATCCATT
GTTATTATTCAAGGGCAGGCCTGGTGCAGTGGTGTGCCATGCTTTGTGCCCTTACGTTTT
AGTTAATTAAAGGGCAAATTACATCTTTATATTGACGATGAATGCTGTTTCTCACAGCTA
TATTCTGATCAGACTTTAGGTTACAACTTACAAGAGAACGAATGAATTTTTATGATGAAA
CACTGCTGAACCTATTGGCTGTGCTGACCTATGCAACTATAACTTAGGAGCGAATTCCTT
CAATACTTTGTAAGGAGTTTCCCAACCGCCAAAAATCCTACGAAAGGGTTATTTTGATCC
ATGCCATTACAAATTTTGAACTTTTGACATGCCATTACTATTTCACCTATTTAAAAACTT
GTCATTACAATTCTTCAACTTGAATCATGCCATTTTCTGCGAATTTGGTGGTATTAGGGC
CATGCACAAGTGACCAAAAGCCATTGCATTATCGTATGGATCAACTACCCCTGCTGTTTC
TTCATCTACTTGCTGACGTGTGGGCCTCATAAGTCAGCTTCTCCGATGAGATCTGAGAGC
TGGGCGGTGAATGCGTGGTGAGAAGTGAGTGGGGCCTACCGGCGCTGGCCATTGCTGCTG
TGAGGAGGGGGAATGGGGACTCGGGGGCCGATACGGTGCGGAGGTAGGATGCGGCGAGCG
GCGTCTGAGTCAGTGGTGAGGGGGAGTCTGCATGGCCGACGGCGAGGCGACATCTGTGTG
GTAGGCCATAGACTCGCACCTGAGCAGCACGATGTCAATGAGGTAGAGGCAGGCGGTGAT
GACACCATAGACGACGGCATGTTCAAGAACGCGGCTGCTCCTCGTCCTGGCAGGCGCAAT
GCTGTTTCTGAGCATGAGGTCAGGGACGCGGCCTCTAGCGAGGCCGTTGGCCGTTGCCTT
CGATGCCCGGGAGACCGCGTCGGCCCCTGCCAAGCCAGTGCGTACGTGCTCCGTGGCCAT
GGCGAAGGGGAAGGTGGGAAGATGGTGAGAGGAAGGGGATGACTGTGGGTCCATATCATG
AGTGGAGAGAGGGCAGTCAGAGGGGTCCAGTATCGTTTCAGGCGTAGAAAATGGCATGAA
TCGGGTACAAAGACAATCGCAATGGCAAGTTTCCAAATAGATAAATAGTAACGACATATG
TCAGAAGTTTGAAAATTGTAATGGCATAGACGAAAAGAACCCTAGGTCCTAGGATGAAAC
TCATTAGAACCACTCTGCTACTGTTCTACCCTTGATGCATCTGAGAATACTGGGTGTCTT
GTGCTAAAGGAAATCTGTTTTGGTTGCTGCAATGGTATTTGACCCATAATGCTAACATTG
TATGGTCTATTGGCCACTCTCTCTCTCTCTCTCTCTCTCTGATGGTTATACATAGGCTTG
TTAATGGATCTGTTGTTTGCAATCAAGATTGTTATTATTGGCGAGTTTCTGCAGAAGCGG
GGAACAACATCGTGCTTCCACATGTACAGTTTACTCAAGATACAATAATGTGTTTGCACT
TTGCAGGTGTGAAGCCTTCTCGACCTATCCTCGAACATATGATCTTCTCCACGCATGGGC
AGTCTTCTCCGACCTCGATAAAAGAGGCTGCAGTGCTGAAGACCTGCTCCTCGAAATGGA
CCGTATCCTCAGGCCTACCGGGTTTGCCATCGTGAGGGACAAGGGCACTGTCATCGAATT
CATCAAGAAGTACCTCCACGCGCTCCACTGGGAAGCAGTAGCGGCTGCAGATGCCGAGCC
CAGCTCGGAATCAGAGGAGAACGAGATGATCTTGGTGATCCGGAAGAAGTTGTGGCTACC
AGAAGCAGGCTCGCACACGTGATTCCCTTCCCGGCGTCTGCAGCTCAGAAGCGAGGCGCC
AGCTGCACCAGCCA