Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032597_T042
CDS Infomation

cds chromosome:B73_RefGen_v4:1:231553195:231556975:-1 gene:Zm00001d032597 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleic acid binding protein

Sequence

ATGGATTATGACAAGTCTAGAAGAAGTAACTCCAAGAAGAGGACACATTCCAATTCTGAT
GACGGAAAGAGAAAACGGTTAAACACTAGGCATGATGACACATCTATGTTCTCTGAGCCA
ATTGAAACCATCTACAGGATATTGTGCCCGGTAAAAAAGATAGGCAGTGTCTTGGGAAGA
GGTGGTGACATTGTTAAGGCCCTTAGAGAGGAAACTAAAGCCAAGATAAGGGTTGCTGAT
TCCATTCCTGGTGCAGATGAGAGAGTAATTATCATCTTCAATTACCAAAATGAGCCTGAA
CCGACTGATGAAGCAGCTGAAGAAAAAAATAGTGATGGCTTAGGGAACTTCAAATCCCAT
TGCTTTGCCCAAGATGCGTTATTGAAGATACATGATAAGATTGTGTCTGATGAAATTCAT
GATGAAGTCGCCAATGATGAAAAGTCTGAAAGTGCAGATGATGTGACTGCTCGAATTTTG
GTTCAAGGCAATCAAGTTGGCTGCCTTCTAGGAAAAGGTGGCTCCATTATACAGCAACTA
CGAAGTAATACTGGTGCTGGAATCCGTGTCTTGCCATCTGAAAACCTTCCCCAGTGTGCA
CTTAAAAGTGATGAACTGGTGCAGATATCTGGAGCACCTTCCCTTGTAAGAAAAGCTCTA
TATGAAATATCTACTCGTCTCCATCAGCATCCTCGTAAGGAAAATAGACCTCTTGAAGAA
ATAATAGATGCAAGCACACAAAGGAAACGTGAATCTCCAACACTACAACATGAATATTCA
ATGTTGCCGCACCTGCATAGTGATCATACACCTCCAATACCCCTGCTTGATCCATATAGA
AGTGGACCACAATATCCTGTTACTGAAACTGAAGAGTTCTCTATCAGAATTCTGTGTGCT
TCTGAGCTCATTGGTTCAGTTATTGGGAAAAGTGGGGCCAATGTTAGGCGTGTAGAGCAG
CAGACTGGTGCTCGCATTAAAGTTCAAGAGATCGACAAAGATGCTTCTGGAGAAAGGCTG
ATCATTATTTCATCTAATGAGATACCAGCTGAACCAATATCCCCAGCAATTGAGGCACTC
ATTTTGCTCCATGATAAAGTGATTACTGACATGAGAAGACGAACTGGGGCTGAAATTCGA
GTTTACTCAAAGGCAGATAAACCAAAATACTTGTCTTTTGATGATGAACTTGTGCAGGTT
GCTGGGCCTCCAACTATTGCAAGAGGAGCCCTCACAGAAATTGCTTCGAGGCTTAGAACT
AGGACTTTGAGAGATACAAGTACCGCCAATAATCCTCCACCTTTTGCCCCTTTTGATGAT
CCTCCTGTTGATATGCCTAGCAGAAAGTTGTCACTATATGGAGGGCCTGCCACTGATCCA
CCGTATGGAAGGCCTGCCAATGATCCACTGTATGGAAGGCCTGCCATTGATCCACCATTC
GGAAGACCTACCAATGATCGACCATATGGAAGGACTGCTGTTGCTCCCCCATTTGGAAGA
CCTGCCAACGATCCACCATATGGAAGGCCTACCAACGATCCACCATATGGACGACCTTCC
GGTAGTATACCATATGGAAGACCAAACGGAAGTGCACCTCGTGAGCCTTCCGATGCATAT
CCTGTAGACTACTTTTCTAAAAGAGAATATCCTAGTGGAAGTCCTATGTTTACTAGTAAT
GCCCCATCAGCTGCTTATGAGAGATATGCAGCACCCACACGCTTTCCTACTAGAGAATTT
CCCTCTGCTTTCAGTCCTGGTGTAGATCATATGCCTCATCATTCCTATCGTGACCATGTG
CCTACTGATAGCTACTCTAGTAGGGGTACACAGCAATTAGGCATCACAAGAGGTGGAAAT
TCAGATGCTTATGACTATACCGAGGCTGCTGGACAAATTCATGGACGTGAGGATTACAGA
GAACCGACAAGTGCTACCGGAAGGTTCTTGAGCACTATTGAACTAAGGATTCCAAATAGT
TCTTTGGGGTCTATCGTCGGTGCTGGTGGGGTCAATCTAGCAGAGATCCGTCAGGTTTCT
GGTGCAAGACTGAGGCTACATGAGGCTCATGCTGGTTCTTCTGAGTCTGTGGTGGAGATC
CAGGGCACACTGGACCAAGCAAAAGCTGCCCAGAGCCTCCTGCAAGGCTTTATTAGTGCA
AACAGCCGGCAGCAACAGCAGCCCTATTCTTCTCGCATGCCACTTTACCCAAGCTGGGGA
TAG

Peptide Sequence

PEP ID

Zm00001d032597_P042
PEP Infomation

pep chromosome:B73_RefGen_v4:1:231553195:231556975:-1 gene:Zm00001d032597 transcript:Zm00001d032597_T042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleic acid binding protein

Sequence

MDYDKSRRSNSKKRTHSNSDDGKRKRLNTRHDDTSMFSEPIETIYRILCPVKKIGSVLGR
GGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEPEPTDEAAEEKNSDGLGNFKSH
CFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQL
RSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLEE
IIDASTQRKRESPTLQHEYSMLPHLHSDHTPPIPLLDPYRSGPQYPVTETEEFSIRILCA
SELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIISSNEIPAEPISPAIEAL
ILLHDKVITDMRRRTGAEIRVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLRT
RTLRDTSTANNPPPFAPFDDPPVDMPSRKLSLYGGPATDPPYGRPANDPLYGRPAIDPPF
GRPTNDRPYGRTAVAPPFGRPANDPPYGRPTNDPPYGRPSGSIPYGRPNGSAPREPSDAY
PVDYFSKREYPSGSPMFTSNAPSAAYERYAAPTRFPTREFPSAFSPGVDHMPHHSYRDHV
PTDSYSSRGTQQLGITRGGNSDAYDYTEAAGQIHGREDYREPTSATGRFLSTIELRIPNS
SLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLQGFISA
NSRQQQQPYSSRMPLYPSWG

Transcript Sequence

Transcript ID

Zm00001d032597_T042
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:231553195:231556975:-1 gene:Zm00001d032597 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nucleic acid binding protein

Sequence

AGGGGGCTACAAGATTGGTTTTGATGGATTATGACAAGTCTAGAAGAAGTAACTCCAAGA
AGAGGACACATTCCAATTCTGATGACGGAAAGAGAAAACGGTTAAACACTAGGCATGATG
ACACATCTATGTTCTCTGAGCCAATTGAAACCATCTACAGGATATTGTGCCCGGTAAAAA
AGATAGGCAGTGTCTTGGGAAGAGGTGGTGACATTGTTAAGGCCCTTAGAGAGGAAACTA
AAGCCAAGATAAGGGTTGCTGATTCCATTCCTGGTGCAGATGAGAGAGTAATTATCATCT
TCAATTACCAAAATGAGCCTGAACCGACTGATGAAGCAGCTGAAGAAAAAAATAGTGATG
GCTTAGGGAACTTCAAATCCCATTGCTTTGCCCAAGATGCGTTATTGAAGATACATGATA
AGATTGTGTCTGATGAAATTCATGATGAAGTCGCCAATGATGAAAAGTCTGAAAGTGCAG
ATGATGTGACTGCTCGAATTTTGGTTCAAGGCAATCAAGTTGGCTGCCTTCTAGGAAAAG
GTGGCTCCATTATACAGCAACTACGAAGTAATACTGGTGCTGGAATCCGTGTCTTGCCAT
CTGAAAACCTTCCCCAGTGTGCACTTAAAAGTGATGAACTGGTGCAGATATCTGGAGCAC
CTTCCCTTGTAAGAAAAGCTCTATATGAAATATCTACTCGTCTCCATCAGCATCCTCGTA
AGGAAAATAGACCTCTTGAAGAAATAATAGATGCAAGCACACAAAGGAAACGTGAATCTC
CAACACTACAACATGAATATTCAATGTTGCCGCACCTGCATAGTGATCATACACCTCCAA
TACCCCTGCTTGATCCATATAGAAGTGGACCACAATATCCTGTTACTGAAACTGAAGAGT
TCTCTATCAGAATTCTGTGTGCTTCTGAGCTCATTGGTTCAGTTATTGGGAAAAGTGGGG
CCAATGTTAGGCGTGTAGAGCAGCAGACTGGTGCTCGCATTAAAGTTCAAGAGATCGACA
AAGATGCTTCTGGAGAAAGGCTGATCATTATTTCATCTAATGAGATACCAGCTGAACCAA
TATCCCCAGCAATTGAGGCACTCATTTTGCTCCATGATAAAGTGATTACTGACATGAGAA
GACGAACTGGGGCTGAAATTCGAGTTTACTCAAAGGCAGATAAACCAAAATACTTGTCTT
TTGATGATGAACTTGTGCAGGTTGCTGGGCCTCCAACTATTGCAAGAGGAGCCCTCACAG
AAATTGCTTCGAGGCTTAGAACTAGGACTTTGAGAGATACAAGTACCGCCAATAATCCTC
CACCTTTTGCCCCTTTTGATGATCCTCCTGTTGATATGCCTAGCAGAAAGTTGTCACTAT
ATGGAGGGCCTGCCACTGATCCACCGTATGGAAGGCCTGCCAATGATCCACTGTATGGAA
GGCCTGCCATTGATCCACCATTCGGAAGACCTACCAATGATCGACCATATGGAAGGACTG
CTGTTGCTCCCCCATTTGGAAGACCTGCCAACGATCCACCATATGGAAGGCCTACCAACG
ATCCACCATATGGACGACCTTCCGGTAGTATACCATATGGAAGACCAAACGGAAGTGCAC
CTCGTGAGCCTTCCGATGCATATCCTGTAGACTACTTTTCTAAAAGAGAATATCCTAGTG
GAAGTCCTATGTTTACTAGTAATGCCCCATCAGCTGCTTATGAGAGATATGCAGCACCCA
CACGCTTTCCTACTAGAGAATTTCCCTCTGCTTTCAGTCCTGGTGTAGATCATATGCCTC
ATCATTCCTATCGTGACCATGTGCCTACTGATAGCTACTCTAGTAGGGGTACACAGCAAT
TAGGCATCACAAGAGGTGGAAATTCAGATGCTTATGACTATACCGAGGCTGCTGGACAAA
TTCATGGACGTGAGGATTACAGAGAACCGACAAGTGCTACCGGAAGGTTCTTGAGCACTA
TTGAACTAAGGATTCCAAATAGTTCTTTGGGGTCTATCGTCGGTGCTGGTGGGGTCAATC
TAGCAGAGATCCGTCAGGTTTCTGGTGCAAGACTGAGGCTACATGAGGCTCATGCTGGTT
CTTCTGAGTCTGTGGTGGAGATCCAGGGCACACTGGACCAAGCAAAAGCTGCCCAGAGCC
TCCTGCAAGGCTTTATTAGTGCAAACAGCCGGCAGCAACAGCAGCCCTATTCTTCTCGCA
TGCCACTTTACCCAAGCTGGGGATAGCTTCTGGTCTCATGGTCGTGTCAGAGGAAAACAG
AGTCAGCAGGGTTTGTCATGTGGCTGTAGATCTCGGACTGCAGATTAGCTGTAGCGATGA
TGTTGTTGAAGGAGGCTGTTTAACAGTGCAAGCAAGATAACTTATACTTATGCCTTAGGA
CAAGTAATATTGTTTTCCTCTGATGAAAT