Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032591_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:1:231449577:231454960:1 gene:Zm00001d032591 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endosomal targeting BRO1-like domain-containing protein
Sequence

ATGGCGTCGGCGGCGGGGTCCTCTAACGTGATGCTTGCGATTCACGAGAAGAAAACGACT
GCCACTGACCTCTACCGCCCGCTGCGCCTCTACATCGCCTCCACCTACTCGGAACGCGAG
GCCGCGGCGGCCGACGACGACCTTAGCGTGGTGCGCGACCTCCGCGCCGCTGTCGAGCAG
CCCTCCCTCCCGGACCCGTCCTCCCTCGAGCAGCGGCGCGACGCGCTCCTCGCCTACGCG
CGGGCCCTGGCACTCGTTGAGCCCCGCTTCCCCATCTCCCCTGACCGCGCCCACGTCCAC
TCCCTCACCTTCACCTGGCACGACGCCTTCAAGGGGAACAAGAAGTGCGCCCTCGCCTCC
ATCCACCTCGAGAAGGCCTCCGTGCTGTTCAACCTCGGCGCCGTCTACTCCCAGATCGCG
GTCGCTGCGGACCGCTCCACCGACGTCGGAATCAAGACCGCGTGCGGTGCCTTCCAGAGT
GCGGCGGGGGCGTTCGCATGGCTCAGGGAGAGCGGGGTCGCAGCCAAGGCTGTTGCTGCG
GGAACCACCACCGTGGACATCACGCCCGAGTGCGCTGGCATGCTGGAGAAACTCATGCTC
GCGCAGGCGCAGGAGTGCTTCTTCGAGAAGGTCATAGGTGGAGGGAAGCCACCAGCGCTG
TGCTCCAAGGTGGCGCGGCAGGTGGGCATATTCTATGAAGAAGCATATGCAGCTCTCAGT
GCACCTCCTCTAAGTCAGCACTTTGATAAGACATGGGTGTCCCATGTCCAGCTGAAAGCT
GCTCAATTCTATGCCGATGCTTGCTATAGGTATTCATTAGATCTTCATCAGAAAGAAGAA
ATTGCTGAGGAAATTGCACGCTTGAAGATTGGTATGAGTGCCTTGGCAGATGCTAAGAAG
GCTGCGAAGGGAGTTGCTGCCCAGCTTATGGATTCCGTCAACAAGCTGGAAAGTAACATG
AAAACGAACTTGGAAAGGGCTATGAAGGAGAATGATCGTGTTTACCTGATGCGGGTTCCC
GCTGCTGGTTCCTTGGGAGCCCTCTCTGCAGCGTCCCTTGTAAAGCCTACCTCTTTGTCT
GAAGTTTTAGATGCCAGTAAGGAAAGGCTTTTTTCATCACTTGTGCCTGATGGCAGCATG
AAAGCACTTTCTAAATACACAGAGATGGTAGATAATATTATCCGGACCCAGGCAGAGAAA
TTGCAGCAAGCTAGTGAGATCACTAGAGTTAGGTTGAAGGAAATGGACTTACCAGATTCT
ATTCTTTCATTGGAAGGAAATATAACCTTGCCCTTGGATCTAAAGGAAGACGTAGAGGCT
GTGCAGATAAGTGGTGGCCCTGCTGGTTTGGAATCTGAGTTGCAGCAGCTTAGGGATTTG
AGCAGGGTCAATCAGGAACTACTTGTTCAGACTGAAGAGCTTCTACAGAAGGAGGCGAAT
GAAGACGCTCAGTTTCGTACACAATTTGGGAGTCGTTGGACTAGACCTCAATCAAGCACC
CTAACTAAGAACATTCAGGATAGATTGAATCTGTTTGCTTCTAATCTGAAGAAAGCTGCT
GATAGTGATTCTCTGATTGAACGAGGCGTGAAGGAGAACTATCCCTTGATGTCTATCCTT
GACAAAAGACCGATAGAGTCTGCACTTCCAAGTATTTCCAGGCCTATCATGTCCTTGGAT
GGGAATGAAGATGCCATTGTTGGAGCTCTGAAACAAAGCTTGAGACAACTGGAATCTCTT
GGAGCGCATAGGGCAGGTCTTGAAGACATGCTCAAAGAAATGAAAAGAAAGGATGATATA
CTGCCTAAGTTGATGGCTGGTGTTGGATCACATGATGATCTTTTCAAGAAAGAGATTGCT
AAGTATGATCCTATCTGTGCTGATATTGCTGATAACATTGTGGCACAGGAACAATTATTG
CTGCAAATACAGGCACAAAATGAGCAATTTGCTGCTGTATTCAATATAGAGGATTACAAA
GCTGCTCGTGAGAGATGTTACAAGCAAATTGCTGCTGCTGTTGCTAAATACCGGGAGTTT
AAGAAGAACATTAACGAGGGCTTAAACTTTTACGTGACTCTGCAGGAAGCAATAGGCAAA
ATAAAACAGCAGTGCAGTGACTTCATAATGACCCGAAACATTCAATGCCGTGAAATGATC
GAAGATGTGCAGAGGAAGCTAGCGGGTTTCAGCTTCTCGTCCTCCAGCCACTCCTCTATG
CAGAGGAATGCTTCTGTACCACCTGATCAGAGCAGCCCGTCACCACCACCGCATGCTCAG
GCTCCCTATGCCTCTCCACCTGGGGTAGACTCAAGACTTGGATATTCTCAACCGGAGCCA
AGACCTGCTTACTCACAGCCATACCCCCCATCCTATGGCGCACCACCACAACAGCCTTCA
TATGGCGCACCACACCCTGGTCAGTACCAGCCGCCAGCGCACCAGCCACCTCCTGGCCAT
GACTACGGCCATATTACAATGCCCCTCAGCCGCAGCAATCTGCGCCATATCCACAGCCAC
CGTACAATGCCCCTGGGGCTTACCCTCCGCACCAGAGCAACTATTACAGGCCTCAGTAAG
CTATCTTATCGTTCCTGCAACTATTTGTTTGCTTCTTTTCCATTGGATCTTACCGTTGTG
GAGTATGCATACGAGAATTTGGTTGGTGCAATATCAGATTGA

Peptide Sequence

PEP ID

Zm00001d032591_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:1:231449577:231454960:1 gene:Zm00001d032591 transcript:Zm00001d032591_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endosomal targeting BRO1-like domain-containing protein
Sequence

MASAAGSSNVMLAIHEKKTTATDLYRPLRLYIASTYSEREAAAADDDLSVVRDLRAAVEQ
PSLPDPSSLEQRRDALLAYARALALVEPRFPISPDRAHVHSLTFTWHDAFKGNKKCALAS
IHLEKASVLFNLGAVYSQIAVAADRSTDVGIKTACGAFQSAAGAFAWLRESGVAAKAVAA
GTTTVDITPECAGMLEKLMLAQAQECFFEKVIGGGKPPALCSKVARQVGIFYEEAYAALS
APPLSQHFDKTWVSHVQLKAAQFYADACYRYSLDLHQKEEIAEEIARLKIGMSALADAKK
AAKGVAAQLMDSVNKLESNMKTNLERAMKENDRVYLMRVPAAGSLGALSAASLVKPTSLS
EVLDASKERLFSSLVPDGSMKALSKYTEMVDNIIRTQAEKLQQASEITRVRLKEMDLPDS
ILSLEGNITLPLDLKEDVEAVQISGGPAGLESELQQLRDLSRVNQELLVQTEELLQKEAN
EDAQFRTQFGSRWTRPQSSTLTKNIQDRLNLFASNLKKAADSDSLIERGVKENYPLMSIL
DKRPIESALPSISRPIMSLDGNEDAIVGALKQSLRQLESLGAHRAGLEDMLKEMKRKDDI
LPKLMAGVGSHDDLFKKEIAKYDPICADIADNIVAQEQLLLQIQAQNEQFAAVFNIEDYK
AARERCYKQIAAAVAKYREFKKNINEGLNFYVTLQEAIGKIKQQCSDFIMTRNIQCREMI
EDVQRKLAGFSFSSSSHSSMQRNASVPPDQSSPSPPPHAQAPYASPPGVDSRLGYSQPEP
RPAYSQPYPPSYGAPPQQPSYGAPHPGQYQPPAHQPPPGHDYGHITMPLSRSNLRHIHSH
RTMPLGLTLRTRATITGLSKLSYRSCNYLFASFPLDLTVVEYAYENLVGAISD

Transcript Sequence

Transcript ID

Zm00001d032591_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:231449577:231454960:1 gene:Zm00001d032591 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endosomal targeting BRO1-like domain-containing protein
Sequence

GAAGCACCCAACCCCACCCCATCCTCCGATCCCCTCCCGGCCTCCCCTCCCCTTCCGCTC
CGCCTCTGGCCACCGCGCCCGCACCCAATGGCGTCGGCGGCGGGGTCCTCTAACGTGATG
CTTGCGATTCACGAGAAGAAAACGACTGCCACTGACCTCTACCGCCCGCTGCGCCTCTAC
ATCGCCTCCACCTACTCGGAACGCGAGGCCGCGGCGGCCGACGACGACCTTAGCGTGGTG
CGCGACCTCCGCGCCGCTGTCGAGCAGCCCTCCCTCCCGGACCCGTCCTCCCTCGAGCAG
CGGCGCGACGCGCTCCTCGCCTACGCGCGGGCCCTGGCACTCGTTGAGCCCCGCTTCCCC
ATCTCCCCTGACCGCGCCCACGTCCACTCCCTCACCTTCACCTGGCACGACGCCTTCAAG
GGGAACAAGAAGTGCGCCCTCGCCTCCATCCACCTCGAGAAGGCCTCCGTGCTGTTCAAC
CTCGGCGCCGTCTACTCCCAGATCGCGGTCGCTGCGGACCGCTCCACCGACGTCGGAATC
AAGACCGCGTGCGGTGCCTTCCAGAGTGCGGCGGGGGCGTTCGCATGGCTCAGGGAGAGC
GGGGTCGCAGCCAAGGCTGTTGCTGCGGGAACCACCACCGTGGACATCACGCCCGAGTGC
GCTGGCATGCTGGAGAAACTCATGCTCGCGCAGGCGCAGGAGTGCTTCTTCGAGAAGGTC
ATAGGTGGAGGGAAGCCACCAGCGCTGTGCTCCAAGGTGGCGCGGCAGGTGGGCATATTC
TATGAAGAAGCATATGCAGCTCTCAGTGCACCTCCTCTAAGTCAGCACTTTGATAAGACA
TGGGTGTCCCATGTCCAGCTGAAAGCTGCTCAATTCTATGCCGATGCTTGCTATAGGTAT
TCATTAGATCTTCATCAGAAAGAAGAAATTGCTGAGGAAATTGCACGCTTGAAGATTGGT
ATGAGTGCCTTGGCAGATGCTAAGAAGGCTGCGAAGGGAGTTGCTGCCCAGCTTATGGAT
TCCGTCAACAAGCTGGAAAGTAACATGAAAACGAACTTGGAAAGGGCTATGAAGGAGAAT
GATCGTGTTTACCTGATGCGGGTTCCCGCTGCTGGTTCCTTGGGAGCCCTCTCTGCAGCG
TCCCTTGTAAAGCCTACCTCTTTGTCTGAAGTTTTAGATGCCAGTAAGGAAAGGCTTTTT
TCATCACTTGTGCCTGATGGCAGCATGAAAGCACTTTCTAAATACACAGAGATGGTAGAT
AATATTATCCGGACCCAGGCAGAGAAATTGCAGCAAGCTAGTGAGATCACTAGAGTTAGG
TTGAAGGAAATGGACTTACCAGATTCTATTCTTTCATTGGAAGGAAATATAACCTTGCCC
TTGGATCTAAAGGAAGACGTAGAGGCTGTGCAGATAAGTGGTGGCCCTGCTGGTTTGGAA
TCTGAGTTGCAGCAGCTTAGGGATTTGAGCAGGGTCAATCAGGAACTACTTGTTCAGACT
GAAGAGCTTCTACAGAAGGAGGCGAATGAAGACGCTCAGTTTCGTACACAATTTGGGAGT
CGTTGGACTAGACCTCAATCAAGCACCCTAACTAAGAACATTCAGGATAGATTGAATCTG
TTTGCTTCTAATCTGAAGAAAGCTGCTGATAGTGATTCTCTGATTGAACGAGGCGTGAAG
GAGAACTATCCCTTGATGTCTATCCTTGACAAAAGACCGATAGAGTCTGCACTTCCAAGT
ATTTCCAGGCCTATCATGTCCTTGGATGGGAATGAAGATGCCATTGTTGGAGCTCTGAAA
CAAAGCTTGAGACAACTGGAATCTCTTGGAGCGCATAGGGCAGGTCTTGAAGACATGCTC
AAAGAAATGAAAAGAAAGGATGATATACTGCCTAAGTTGATGGCTGGTGTTGGATCACAT
GATGATCTTTTCAAGAAAGAGATTGCTAAGTATGATCCTATCTGTGCTGATATTGCTGAT
AACATTGTGGCACAGGAACAATTATTGCTGCAAATACAGGCACAAAATGAGCAATTTGCT
GCTGTATTCAATATAGAGGATTACAAAGCTGCTCGTGAGAGATGTTACAAGCAAATTGCT
GCTGCTGTTGCTAAATACCGGGAGTTTAAGAAGAACATTAACGAGGGCTTAAACTTTTAC
GTGACTCTGCAGGAAGCAATAGGCAAAATAAAACAGCAGTGCAGTGACTTCATAATGACC
CGAAACATTCAATGCCGTGAAATGATCGAAGATGTGCAGAGGAAGCTAGCGGGTTTCAGC
TTCTCGTCCTCCAGCCACTCCTCTATGCAGAGGAATGCTTCTGTACCACCTGATCAGAGC
AGCCCGTCACCACCACCGCATGCTCAGGCTCCCTATGCCTCTCCACCTGGGGTAGACTCA
AGACTTGGATATTCTCAACCGGAGCCAAGACCTGCTTACTCACAGCCATACCCCCCATCC
TATGGCGCACCACCACAACAGCCTTCATATGGCGCACCACACCCTGGTCAGTACCAGCCG
CCAGCGCACCAGCCACCTCCTGGCCATGACTACGGCCATATTACAATGCCCCTCAGCCGC
AGCAATCTGCGCCATATCCACAGCCACCGTACAATGCCCCTGGGGCTTACCCTCCGCACC
AGAGCAACTATTACAGGCCTCAGTAAGCTATCTTATCGTTCCTGCAACTATTTGTTTGCT
TCTTTTCCATTGGATCTTACCGTTGTGGAGTATGCATACGAGAATTTGGTTGGTGCAATA
TCAGATTGATTAGAAGGTATAGCTTGTATGATTT