Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032532_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:229809577:229812869:1 gene:Zm00001d032532 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamyl-tRNA reductase 1 chloroplastic
Sequence

ATGATGGCGAGCACCGCATCAGCGACCGCCGCCGCCGCCGCCGTGGCATTCGGGGCAGCC
GCCAAGCCGCGGGGACCGGCGGCTGTGGCGCTCCGCGCAAGGGTGCCTGCCGGCGGCAGG
CGGCGCTCCGGCGTGGTGGTGCGCTGCGACGCCGGCGTGGAGGTCCAGGCGCAGGCGGTG
GCCAAGGCCGCCAGCATCGCCGCGCTCGAGCAGTTCAAGATCTCCGCAGACCGGTACATG
AAGGAAAGGAGTAGCGTAGCTGTGATAGGTCTCAGTGTACACACAGCACCAGTGGAGATG
CGTGAAAAACTTGCGGTTGCAGAGGAACTATGGCCCCGTGCTATTCAAGAACTTACTAGT
CTAAACCATATTGAAGAGGCTGCTGTTCTTAGTACTTGTAATAGAATGGAAATTTATGTG
GTAGCCCTATCATGGAACCGAGGTATCAGAGAAGTAGTTGACTGGATGTCAAAGAAAAGT
GGTATTCCTGCTTCTGAGCTTAAGGAGCACCTATTCATGCTGCGTGACAGTGATGCTACA
CGCCATCTGTTCGAGGTATCAGCTGGGTTGGACTCTTTGGTTCTCGGTGAAGGACAAATC
CTTGCTCAAGTCAAACAAGTTGTGAGAAGTGGGCAAAATAGTGGAGGCCTGGGGAAGAAC
ATCGACAGAATGTTCAAGGATGCAATTACTGCTGGAAAGCGTGTGCGCTCCGAGACCAAC
ATATCATCTGGTGCTGTTTCTGTCAGTTCAGCGGCAGTTGAATTGGCCCTGATGAAGCTT
CCAAAGTCTGAAGCCCTTTCAGCTAGGATGCTTTTGATTGGTGCTGGTAAAATGGGAAAA
CTAGTGATCAAACATCTTATTGCCAAAGGATGCAAGAAGGTGGTTGTGGTCAACCGTTCA
GTGGAAAGGGTGGATGCCATCCGCGAGGAGATGAAAGGTATCGAGATTGTGTACAGGCCT
CTTTCAGAGATGTACGAAGCTGCTGCTGAAGCTGATGTCCTATTCACGAGCACTGCATCT
GAAACCCCATTGTTCACAAAAGAGCACGCAGAGGCACTTCCCACAATTTCCGATGCCATG
GGTGGTGCCCGGCTTTTCGTCGACATATCTGTCCCAAGGAATGTCAGCGCGTGCGTCTCT
GAAATCGACTCCGCGCGAGTATACAATGTTGATGACCTGAAAGAGGTGGTGGAAGCCAAC
AAGGAAGACCGTCTCAGGAAGGCGATGGAGGCACAGACAATCATCGCCGAAGAGCTGAAA
CGGTTTGAGGCGTGGCGGGACTCGCTGGAGACCGTTCCAACCATCAAGAAGCTGAGGTCT
TACGCCGACAGGATCCGGGCCTCGGAGCTCGAGAAGTGCCTGCAGAAGATCGGGGACGAC
GCTCTCACCAAGAAGACAAGGAGAGCCATCGAGGAGCTAAGCACCGGCATCGTGAACAAG
CTCCTCCACGGCCCGCTGCAGCACCTGAGGTGCGACGGCGGTAACAGCCGCACCCTTGAC
GAGACCCTCGAGAACATGCACGCTCTCAATCGGATGTTCGGCCTCGACACCGAGAAGGCT
ATCGTCGAGCAGAAGATCAAGGCCAAGGTGGAGAAGATCCAAAACTGA

Peptide Sequence

PEP ID

Zm00001d032532_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:229809577:229812869:1 gene:Zm00001d032532 transcript:Zm00001d032532_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamyl-tRNA reductase 1 chloroplastic
Sequence

MMASTASATAAAAAVAFGAAAKPRGPAAVALRARVPAGGRRRSGVVVRCDAGVEVQAQAV
AKAASIAALEQFKISADRYMKERSSVAVIGLSVHTAPVEMREKLAVAEELWPRAIQELTS
LNHIEEAAVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELKEHLFMLRDSDAT
RHLFEVSAGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRSETN
ISSGAVSVSSAAVELALMKLPKSEALSARMLLIGAGKMGKLVIKHLIAKGCKKVVVVNRS
VERVDAIREEMKGIEIVYRPLSEMYEAAAEADVLFTSTASETPLFTKEHAEALPTISDAM
GGARLFVDISVPRNVSACVSEIDSARVYNVDDLKEVVEANKEDRLRKAMEAQTIIAEELK
RFEAWRDSLETVPTIKKLRSYADRIRASELEKCLQKIGDDALTKKTRRAIEELSTGIVNK
LLHGPLQHLRCDGGNSRTLDETLENMHALNRMFGLDTEKAIVEQKIKAKVEKIQN

Transcript Sequence

Transcript ID

Zm00001d032532_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:229809577:229812869:1 gene:Zm00001d032532 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamyl-tRNA reductase 1 chloroplastic
Sequence

CTCCTGTGAAGCCAACTCGTCCCCTCGGGCCAACGCGAGGCCAAAACCAATCTCACATCT
CCTCCCCCTCCCACCACCGAGGACCCTTCCCCAAGAACTGCTCCGAGTCCTGGAGCGGGA
GAGAGGTCGAGGGAGGAGCCCAATAAGAGTTTCTCCTCGCCTCTCTCTCTCTCTTTCTGC
TCGAAAAATTATTGTCGCATTGGTTTGGTTCCCTTGCCAAAGGAGGCTGCTTTTCTGTCC
TCCCTGATCTAACATGATGGCGAGCACCGCATCAGCGACCGCCGCCGCCGCCGCCGTGGC
ATTCGGGGCAGCCGCCAAGCCGCGGGGACCGGCGGCTGTGGCGCTCCGCGCAAGGGTGCC
TGCCGGCGGCAGGCGGCGCTCCGGCGTGGTGGTGCGCTGCGACGCCGGCGTGGAGGTCCA
GGCGCAGGCGGTGGCCAAGGCCGCCAGCATCGCCGCGCTCGAGCAGTTCAAGATCTCCGC
AGACCGGTACATGAAGGAAAGGAGTAGCGTAGCTGTGATAGGTCTCAGTGTACACACAGC
ACCAGTGGAGATGCGTGAAAAACTTGCGGTTGCAGAGGAACTATGGCCCCGTGCTATTCA
AGAACTTACTAGTCTAAACCATATTGAAGAGGCTGCTGTTCTTAGTACTTGTAATAGAAT
GGAAATTTATGTGGTAGCCCTATCATGGAACCGAGGTATCAGAGAAGTAGTTGACTGGAT
GTCAAAGAAAAGTGGTATTCCTGCTTCTGAGCTTAAGGAGCACCTATTCATGCTGCGTGA
CAGTGATGCTACACGCCATCTGTTCGAGGTATCAGCTGGGTTGGACTCTTTGGTTCTCGG
TGAAGGACAAATCCTTGCTCAAGTCAAACAAGTTGTGAGAAGTGGGCAAAATAGTGGAGG
CCTGGGGAAGAACATCGACAGAATGTTCAAGGATGCAATTACTGCTGGAAAGCGTGTGCG
CTCCGAGACCAACATATCATCTGGTGCTGTTTCTGTCAGTTCAGCGGCAGTTGAATTGGC
CCTGATGAAGCTTCCAAAGTCTGAAGCCCTTTCAGCTAGGATGCTTTTGATTGGTGCTGG
TAAAATGGGAAAACTAGTGATCAAACATCTTATTGCCAAAGGATGCAAGAAGGTGGTTGT
GGTCAACCGTTCAGTGGAAAGGGTGGATGCCATCCGCGAGGAGATGAAAGGTATCGAGAT
TGTGTACAGGCCTCTTTCAGAGATGTACGAAGCTGCTGCTGAAGCTGATGTCCTATTCAC
GAGCACTGCATCTGAAACCCCATTGTTCACAAAAGAGCACGCAGAGGCACTTCCCACAAT
TTCCGATGCCATGGGTGGTGCCCGGCTTTTCGTCGACATATCTGTCCCAAGGAATGTCAG
CGCGTGCGTCTCTGAAATCGACTCCGCGCGAGTATACAATGTTGATGACCTGAAAGAGGT
GGTGGAAGCCAACAAGGAAGACCGTCTCAGGAAGGCGATGGAGGCACAGACAATCATCGC
CGAAGAGCTGAAACGGTTTGAGGCGTGGCGGGACTCGCTGGAGACCGTTCCAACCATCAA
GAAGCTGAGGTCTTACGCCGACAGGATCCGGGCCTCGGAGCTCGAGAAGTGCCTGCAGAA
GATCGGGGACGACGCTCTCACCAAGAAGACAAGGAGAGCCATCGAGGAGCTAAGCACCGG
CATCGTGAACAAGCTCCTCCACGGCCCGCTGCAGCACCTGAGGTGCGACGGCGGTAACAG
CCGCACCCTTGACGAGACCCTCGAGAACATGCACGCTCTCAATCGGATGTTCGGCCTCGA
CACCGAGAAGGCTATCGTCGAGCAGAAGATCAAGGCCAAGGTGGAGAAGATCCAAAACTG
AGGACAGGAAGCAGTTTTTCTTCCCCGTGTATACATACCATACCCTCCAATCTGATTCCA
TTTTTTTTTTTTTGACCCTTTCACTTACTGAGCTCCTCCCCTGCTCGCTGAGACGTGGAC
TGTGCCGTGAATTAGCGCCATGGCAGCAGCTCAATCTGTTGAGAGAGAGCGGCAAATTGT
CTCTACTCCAGCTGCTTTTCTTTCTTCATTTTTGCTTGAGCTGCTGTGGCAAGAGCCCCC
ATTCTTAAGCTATATACTTCATTCGGACGGAACAGGAATGTATCGATGTGTCAGCTGATG
CCGTTTTCATTTGTCATTATACTTGTAAGGTTTACTGATACTGTAATACCTTTTACGCTA
TCCCTGTATTCAGATTGTCGAGCATTATCTTTTCCAGAGAGTTTAACTTTGTTTAGCGGT
TGGATCGGTTCATATGAACTTTAATTTCTTCTGTTCATTTAATGTTAAATCAACAAATAT
AATGCCATAATTGGCATGTTCTTGC