Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032505_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:228773674:228781928:1 gene:Zm00001d032505 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein dnaJ 13
Sequence

ATGGCGTCGGCTCCGGAGCCGGAGAACGGGAGGGAACTCTACGCGCTGCTCCACCTCTCG
CCGGACGCCTCCAGCGAGGAAGTCCGCAGGGCGTACCGCCAGTTTGCGCAAATCTACCAC
CCCGATAAATACCAGGACCCGCAGATGAAGGATGTAGCAACTGAAAACTTCCAACGAATA
TGTGAAGCTTATGAGATACTATCAGATGATAACAAAAGACAGGTGTATGACATCTATGGT
ATGGAAGGTTTAAATTCTGGCCTGGAACTTGGTCCCAAGCTAACTAAACCAGAAGAAATC
AAGGAACAGTTAGAACGACTGCGGCGGCGCAAGGAGGAAGAAAAACTTTTCAAGCATGCT
CTACCCAATGGCTCAATCATTGCTAATTTCTCAGTGCCACAATATTTAAATGACGGGAGC
ATCATGAGAGGAATGGCGATGCTTAGTCAAGTTGAGTTGCCAGTGTCCAAGCAAAATACT
GTCGTTGTTGGTGGGAATTTGATTGTAAATGGCTCAGCTGGATCTGGAGCAGCAACCACT
GTGCTGCGACACCAGTTGTCTCCTGTTTCCTCTATTGAGTTTATGGCCACAGCTGGACTA
CGTTCTGTTATTGGTGGGCAGATGTTTCGTCAAATTTCACCACATTCTACAGCAACTTCT
GGACTTGCTGTTTCTTTGAGAGATGGGTCTATCAACTTGTCAAATGCCTGGACTCGCCAA
TTGTCTGACAATACTGTTGGAAATATACAGCTAGTCCTTGGCGATGAATCAAGTATTTCT
GTTGGATGGCAAAAGAAGGATGAAAAACGTACTGCAACTGGAGAAGTAAAGTTTGGAACT
AATTTTTTTGGTGCATCTGCTCATTATACACATCGCTTCTCCTCCAAATCTCATGCACGC
ATCGCTGGTAGAGTTGGAAGCACAATCCTTGATTTTGAAATTGGAGGAGGGAGGCGAATA
TCAGAATTTAGTACTGTAAGGATGATGTATAACATAGGAATTCAGGGCGTATCTTGGAAG
TTTGAGTTACATCGTGCTGGTCAAAAGTTAATCATCCCAGTCTTGCTTTCAACTGATTTA
AATCCATTATTTGTTACCAGTGCATTTGCTATTCCTTCAACACTGTATTTTCTACTTCAG
ACATATGTTGTAAAGCCTTACTACCTTAAGCGAGAAAAGCAGAAAACACTAGAAAAGATG
GAAGGCTTATCTACACAGCTAACTGAAGCCAGAAAGGCAGCTGAAAAAGCTCAAAAATTA
CTGGAACCTGTCTCCAACCGTAAGAAGAATAGACAGCTAGAGAACAACGGATTGGTGATA
ACGAAGGCTCTATATGGCAGTCGCCAAAAAATCAAAATGAGCAGTGAATTGAATGATATA
CACAATGACATGGCTTCACAAGTATTTGATGTGACCATCCCACTGAACTTCCTCGTTACT
GAGGCAGGCCAGCTCAAGCTTCATGACGGGATAAAGAAGTCTGGAATAATGGGTTTCTAC
GATCCTTGTCCTGGAGACCCGAAGCTATTACTTGTCGAGTATACGTTTCATGGTCATAAA
TACAAGGTCATGGTGGATGACTATGAGGCGCTGTTGATACCACAAGATATCCATCAATTT
TGA

Peptide Sequence

PEP ID

Zm00001d032505_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:228773674:228781928:1 gene:Zm00001d032505 transcript:Zm00001d032505_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein dnaJ 13
Sequence

MASAPEPENGRELYALLHLSPDASSEEVRRAYRQFAQIYHPDKYQDPQMKDVATENFQRI
CEAYEILSDDNKRQVYDIYGMEGLNSGLELGPKLTKPEEIKEQLERLRRRKEEEKLFKHA
LPNGSIIANFSVPQYLNDGSIMRGMAMLSQVELPVSKQNTVVVGGNLIVNGSAGSGAATT
VLRHQLSPVSSIEFMATAGLRSVIGGQMFRQISPHSTATSGLAVSLRDGSINLSNAWTRQ
LSDNTVGNIQLVLGDESSISVGWQKKDEKRTATGEVKFGTNFFGASAHYTHRFSSKSHAR
IAGRVGSTILDFEIGGGRRISEFSTVRMMYNIGIQGVSWKFELHRAGQKLIIPVLLSTDL
NPLFVTSAFAIPSTLYFLLQTYVVKPYYLKREKQKTLEKMEGLSTQLTEARKAAEKAQKL
LEPVSNRKKNRQLENNGLVITKALYGSRQKIKMSSELNDIHNDMASQVFDVTIPLNFLVT
EAGQLKLHDGIKKSGIMGFYDPCPGDPKLLLVEYTFHGHKYKVMVDDYEALLIPQDIHQF

Transcript Sequence

Transcript ID

Zm00001d032505_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:228773674:228781928:1 gene:Zm00001d032505 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chaperone protein dnaJ 13
Sequence

GCTGCAGAAGTTGAAGAACATCATTACAAACGAGCTCCCTACAAAGTATACAGACTAAAA
AAAATAGAAAAGGAATTCCGCATAAACCCCTCCCAGCCAAAAAAAACCACCCCCGCCGCG
GCCGCCGAGCGAGCGGTAAGCAGCCGCCGCACCACGAGAGCGGGATGGCGTCGGCTCCGG
AGCCGGAGAACGGGAGGGAACTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCAGCG
AGGAAGTCCGCAGGGCGTACCGCCAGTTTGCGCAAATCTACCACCCCGATAAATACCAGG
ACCCGCAGATGAAGGATGTAGCAACTGAAAACTTCCAACGAATATGTGAAGCTTATGAGA
TACTATCAGATGATAACAAAAGACAGGTGTATGACATCTATGGTATGGAAGGTTTAAATT
CTGGCCTGGAACTTGGTCCCAAGCTAACTAAACCAGAAGAAATCAAGGAACAGTTAGAAC
GACTGCGGCGGCGCAAGGAGGAAGAAAAACTTTTCAAGCATGCTCTACCCAATGGCTCAA
TCATTGCTAATTTCTCAGTGCCACAATATTTAAATGACGGGAGCATCATGAGAGGAATGG
CGATGCTTAGTCAAGTTGAGTTGCCAGTGTCCAAGCAAAATACTGTCGTTGTTGGTGGGA
ATTTGATTGTAAATGGCTCAGCTGGATCTGGAGCAGCAACCACTGTGCTGCGACACCAGT
TGTCTCCTGTTTCCTCTATTGAGTTTATGGCCACAGCTGGACTACGTTCTGTTATTGGTG
GGCAGATGTTTCGTCAAATTTCACCACATTCTACAGCAACTTCTGGACTTGCTGTTTCTT
TGAGAGATGGGTCTATCAACTTGTCAAATGCCTGGACTCGCCAATTGTCTGACAATACTG
TTGGAAATATACAGCTAGTCCTTGGCGATGAATCAAGTATTTCTGTTGGATGGCAAAAGA
AGGATGAAAAACGTACTGCAACTGGAGAAGTAAAGTTTGGAACTAATTTTTTTGGTGCAT
CTGCTCATTATACACATCGCTTCTCCTCCAAATCTCATGCACGCATCGCTGGTAGAGTTG
GAAGCACAATCCTTGATTTTGAAATTGGAGGAGGGAGGCGAATATCAGAATTTAGTACTG
TAAGGATGATGTATAACATAGGAATTCAGGGCGTATCTTGGAAGTTTGAGTTACATCGTG
CTGGTCAAAAGTTAATCATCCCAGTCTTGCTTTCAACTGATTTAAATCCATTATTTGTTA
CCAGTGCATTTGCTATTCCTTCAACACTGTATTTTCTACTTCAGACATATGTTGTAAAGC
CTTACTACCTTAAGCGAGAAAAGCAGAAAACACTAGAAAAGATGGAAGGCTTATCTACAC
AGCTAACTGAAGCCAGAAAGGCAGCTGAAAAAGCTCAAAAATTACTGGAACCTGTCTCCA
ACCGTAAGAAGAATAGACAGCTAGAGAACAACGGATTGGTGATAACGAAGGCTCTATATG
GCAGTCGCCAAAAAATCAAAATGAGCAGTGAATTGAATGATATACACAATGACATGGCTT
CACAAGTATTTGATGTGACCATCCCACTGAACTTCCTCGTTACTGAGGCAGGCCAGCTCA
AGCTTCATGACGGGATAAAGAAGTCTGGAATAATGGGTTTCTACGATCCTTGTCCTGGAG
ACCCGAAGCTATTACTTGTCGAGTATACGTTTCATGGTCATAAATACAAGGTCATGGTGG
ATGACTATGAGGCGCTGTTGATACCACAAGATATCCATCAATTTTGAACGGTTCCTGATG
TAAAAGCCACATCAAAACGATTTTGGGTCATCAGCTCCCTTTCTCACATTTTTTGTTCCT
TTTGTGTTGAGCTATCTCTGTTTTCGGTCATTCCT