Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d032353_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:1:223545282:223577431:-1 gene:Zm00001d032353 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 2 description: blue-light receptor phototropin 2
Sequence	ATGGCGGAGTCATCGTCAAGGCAAGCGGCCGAGATGGTGGAGAAGTGGATGGCGTTCCCG TCTGGCTCCGACGCCGGCAGCGGCTTCGCGTTCCCGGCGCCACGCTCAGTGTCGGGCGCG GGCAAGGAGATAGTGGAGCTGGCGTCGCCCTCCACAGCCACGGCCACGGCCACGGCCACG ACCACGGCCAGTGCCGGCAACAGGCAGGCCTCGTTCCAGCGCGGCCGCGACAGTGGCGTG GGCAGCACCAGGTCGTCCATGGACGGCGCGCGCGCGTCGGGGGACTCGTCGATGCCGCGG GTGTCGCAGGAGCTCAAGGACGCGCTGTCCAGCCTGCAGCAGACCTTCGTGGTCTCCGAC GCCACCCGCCCGGACTGCCCCATCATCTACGCCAGCGCCGGCTTCTACACCATGACCGGC TACACCCCCAAGGAAGTCACCGGCCGCAACTGCCGCTTCCTGCAGGGCCCCGACACGGAC ATGAACGAGGTTGCCAAGATCCGGGACGCCGTTAAAACCGGCCGCAGTTTCTGCGGCCGC TTGCTCAACTACCGCAAGGACGGCACGCCCTTCTGGAACATGCTCACCGTCACCCCCATC CGCGACGACAACGGCAAGGTCATCAAGTTCATCGGGATGCAAGTCGAGGTGAGCAAGTAC ACGGAGGGGCTCAGCGAAAAGCGCATGCGGCCAAACGAGATGCCAGTGTCCCTCATCCAC TACGACGACCGGCAGAAGGAGACGGCAATGTCATCGATCACGGAGGTGGTGCAGACGGTG AAGCACCCGCGCGCTCGCTCCGAGGGTGAACAGGAGCCCGTGGAGCCTGCACCGCCCGTC ATGGCGTCGCCGTTGGTGGCCCCTGGCACGCCGTCGGGCGGTGCCAGCCTCAAGTCCCCG CTCTGGGACGTGAAGAAGGAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCC CTCATGGGGTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGCG GAGGTGGAGGCCCCGGCGCCGGCGCCGGCGCCACCGGAGTCAACGACGGAGAAGCAGCGC AAGAACAGCTGGGAGCAAGAGGGGAGGGAGAGGGACATCAGGCAGGGGATCGATCTAGCC ACGACACTAGAGCGTATCGAGAAGAACTTCGTCATCACGGATCCCAGGCTCCCCGACAAC CCCATCATCTTCGCGTCGGATAGCTTCTTGGAGCTGACGGAGTACACGCGGGAAGAGATC CTCGGGAGGAATTGCAGACTGCACATGCCAATATTGCTCAATAAAAAGAGCTCGTGTAGT CATGCTGGTGACCTAGATAATCCTATTGGTATTTGTAGATTTCTTCAAGGGCCAGAGACC GACATGTCCACAGTTGATAAGATCCGGGAAGCTATCCGGGAACAGAAAGAAATCACTGTC CAGCTAATCAACTACACCAAGAGCGGGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCA ATGCGAGACCAGAAAGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGAC CATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTAAATTG GTCAAAGCTACGGCAGAGAATGTGGATGAAGCAGTCAGAGAGCTTCCTGATCCCAACCTG AGACCAGAGGATCTATGGGACATTTACTCACGATATGTTTCCCCAAAGCCTCATAAACGT TACAACTCTTCTTGGATTGCGATGGAAAAGATTATAAAATCTGGTGTGAAGATTGGCTTG AAGCACTTCAAGCCTATAAAACCTTTGGGTTATGGTGACACTGGCAGTGTACATTTGGTG GAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTG AACCGCAACAAGGTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCAT CCTTTTCTCCCAACATTATATACTTCATTCCAGACACCAACACATGTTTGTCTCATAACA GACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTC AGAGAAGAATCTGCAAGGTTTTATGCTGCAGAGGTTGTAATTGGCCTGGAGTATCTCCAT TGCCTTGGAATAATATACCGTGACCTAAAGCCAGAAAACATTTTGCTCCAAGAGGATGGC CACATCGTTCTGACTGATTTTGACCTCTCTTTTTTGACTTCCTCAAAACCTCATGTGATA AAGCATTCTACATCAAGGCGAAGAAGATCTAAGGAGTATCTGCCCCCAAGTTTTGTTTCA GATCCTGCCACTCCATCAAATTCTTTTGTTGGAACTGAAGAGTACATAGCTCCAGAGGTC ATCACTGGTGTACCACATACAAGTGCCATTGATTGGTGGGCTCTTGGAATTCTCTTGTAT GAAATGTTGTATGGACGTACACCTTTTCGAGGAAAGAACAGGAAAAGGACATTTCATAAT ATCCTGCACAAAGACCTTACATTTCCAAGTAGCATTCCGGTTAGTCCTGCGGCTAAGCAA TTAATCCATGGATTGCTACAGAGAGATCCCTCTTCTCGACTTGGTTCAAGTGCTGCTGCA AACGATATCAAGCAACATCCCTTTTTTGAAGATATACACTGGCCACTCATCCGTTGCATG GAGCCCCCAGAGCTTGATGTTCCACTGAAACTAACTCGGAAGGAACCTGAACAAAAAGTG AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGA

Peptide Sequence

PEP ID	Zm00001d032353_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:1:223545282:223577431:-1 gene:Zm00001d032353 transcript:Zm00001d032353_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 2 description: blue-light receptor phototropin 2
Sequence	MAESSSRQAAEMVEKWMAFPSGSDAGSGFAFPAPRSVSGAGKEIVELASPSTATATATAT TTASAGNRQASFQRGRDSGVGSTRSSMDGARASGDSSMPRVSQELKDALSSLQQTFVVSD ATRPDCPIIYASAGFYTMTGYTPKEVTGRNCRFLQGPDTDMNEVAKIRDAVKTGRSFCGR LLNYRKDGTPFWNMLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSEKRMRPNEMPVSLIH YDDRQKETAMSSITEVVQTVKHPRARSEGEQEPVEPAPPVMASPLVAPGTPSGGASLKSP LWDVKKEDSRLSRKSSRRSSLMGFKMGKRSSIGSKDALPAEVEAPAPAPAPPESTTEKQR KNSWEQEGRERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEI LGRNCRLHMPILLNKKSSCSHAGDLDNPIGICRFLQGPETDMSTVDKIREAIREQKEITV QLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHVEPLRNRLSENTELQSAKL VKATAENVDEAVRELPDPNLRPEDLWDIYSRYVSPKPHKRYNSSWIAMEKIIKSGVKIGL KHFKPIKPLGYGDTGSVHLVELQGSGELFAMKAMDKSVMLNRNKVHRACMEREIYSLLDH PFLPTLYTSFQTPTHVCLITDFCPGGELFALLDMQPMKLFREESARFYAAEVVIGLEYLH CLGIIYRDLKPENILLQEDGHIVLTDFDLSFLTSSKPHVIKHSTSRRRRSKEYLPPSFVS DPATPSNSFVGTEEYIAPEVITGVPHTSAIDWWALGILLYEMLYGRTPFRGKNRKRTFHN ILHKDLTFPSSIPVSPAAKQLIHGLLQRDPSSRLGSSAAANDIKQHPFFEDIHWPLIRCM EPPELDVPLKLTRKEPEQKVKPEEDIYSCSDY

Transcript Sequence

Transcript ID	Zm00001d032353_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:223545282:223577431:-1 gene:Zm00001d032353 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:blue-light receptor phototropin 2 description: blue-light receptor phototropin 2
Sequence	ATGGCGGAGTCATCGTCAAGGCAAGCGGCCGAGATGGTGGAGAAGTGGATGGCGTTCCCG TCTGGCTCCGACGCCGGCAGCGGCTTCGCGTTCCCGGCGCCACGCTCAGTGTCGGGCGCG GGCAAGGAGATAGTGGAGCTGGCGTCGCCCTCCACAGCCACGGCCACGGCCACGGCCACG ACCACGGCCAGTGCCGGCAACAGGCAGGCCTCGTTCCAGCGCGGCCGCGACAGTGGCGTG GGCAGCACCAGGTCGTCCATGGACGGCGCGCGCGCGTCGGGGGACTCGTCGATGCCGCGG GTGTCGCAGGAGCTCAAGGACGCGCTGTCCAGCCTGCAGCAGACCTTCGTGGTCTCCGAC GCCACCCGCCCGGACTGCCCCATCATCTACGCCAGCGCCGGCTTCTACACCATGACCGGC TACACCCCCAAGGAAGTCACCGGCCGCAACTGCCGCTTCCTGCAGGGCCCCGACACGGAC ATGAACGAGGTTGCCAAGATCCGGGACGCCGTTAAAACCGGCCGCAGTTTCTGCGGCCGC TTGCTCAACTACCGCAAGGACGGCACGCCCTTCTGGAACATGCTCACCGTCACCCCCATC CGCGACGACAACGGCAAGGTCATCAAGTTCATCGGGATGCAAGTCGAGGTGAGCAAGTAC ACGGAGGGGCTCAGCGAAAAGCGCATGCGGCCAAACGAGATGCCAGTGTCCCTCATCCAC TACGACGACCGGCAGAAGGAGACGGCAATGTCATCGATCACGGAGGTGGTGCAGACGGTG AAGCACCCGCGCGCTCGCTCCGAGGGTGAACAGGAGCCCGTGGAGCCTGCACCGCCCGTC ATGGCGTCGCCGTTGGTGGCCCCTGGCACGCCGTCGGGCGGTGCCAGCCTCAAGTCCCCG CTCTGGGACGTGAAGAAGGAGGACTCACGGCTGAGCCGGAAGTCGAGCCGCCGCTCTTCC CTCATGGGGTTCAAGATGGGGAAGAGGAGCTCGATAGGAAGCAAGGATGCCCTTCCAGCG GAGGTGGAGGCCCCGGCGCCGGCGCCGGCGCCACCGGAGTCAACGACGGAGAAGCAGCGC AAGAACAGCTGGGAGCAAGAGGGGAGGGAGAGGGACATCAGGCAGGGGATCGATCTAGCC ACGACACTAGAGCGTATCGAGAAGAACTTCGTCATCACGGATCCCAGGCTCCCCGACAAC CCCATCATCTTCGCGTCGGATAGCTTCTTGGAGCTGACGGAGTACACGCGGGAAGAGATC CTCGGGAGGAATTGCAGACTGCACATGCCAATATTGCTCAATAAAAAGAGCTCGTGTAGT CATGCTGGTGACCTAGATAATCCTATTGGTATTTGTAGATTTCTTCAAGGGCCAGAGACC GACATGTCCACAGTTGATAAGATCCGGGAAGCTATCCGGGAACAGAAAGAAATCACTGTC CAGCTAATCAACTACACCAAGAGCGGGAAGAAGTTTTGGAACTTGTTCCACCTACAGCCA ATGCGAGACCAGAAAGGAGAGCTTCAATACTTCATTGGAGTTCAATTGGATGGAAGCGAC CATGTTGAACCCCTTAGGAATCGTCTCTCTGAGAACACTGAACTACAAAGTGCTAAATTG GTCAAAGCTACGGCAGAGAATGTGGATGAAGCAGTCAGAGAGCTTCCTGATCCCAACCTG AGACCAGAGGATCTATGGGACATTTACTCACGATATGTTTCCCCAAAGCCTCATAAACGT TACAACTCTTCTTGGATTGCGATGGAAAAGATTATAAAATCTGGTGTGAAGATTGGCTTG AAGCACTTCAAGCCTATAAAACCTTTGGGTTATGGTGACACTGGCAGTGTACATTTGGTG GAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTG AACCGCAACAAGGTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCAT CCTTTTCTCCCAACATTATATACTTCATTCCAGACACCAACACATGTTTGTCTCATAACA GACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTC AGAGAAGAATCTGCAAGGTTTTATGCTGCAGAGGTTGTAATTGGCCTGGAGTATCTCCAT TGCCTTGGAATAATATACCGTGACCTAAAGCCAGAAAACATTTTGCTCCAAGAGGATGGC CACATCGTTCTGACTGATTTTGACCTCTCTTTTTTGACTTCCTCAAAACCTCATGTGATA AAGCATTCTACATCAAGGCGAAGAAGATCTAAGGAGTATCTGCCCCCAAGTTTTGTTTCA GATCCTGCCACTCCATCAAATTCTTTTGTTGGAACTGAAGAGTACATAGCTCCAGAGGTC ATCACTGGTGTACCACATACAAGTGCCATTGATTGGTGGGCTCTTGGAATTCTCTTGTAT GAAATGTTGTATGGACGTACACCTTTTCGAGGAAAGAACAGGAAAAGGACATTTCATAAT ATCCTGCACAAAGACCTTACATTTCCAAGTAGCATTCCGGTTAGTCCTGCGGCTAAGCAA TTAATCCATGGATTGCTACAGAGAGATCCCTCTTCTCGACTTGGTTCAAGTGCTGCTGCA AACGATATCAAGCAACATCCCTTTTTTGAAGATATACACTGGCCACTCATCCGTTGCATG GAGCCCCCAGAGCTTGATGTTCCACTGAAACTAACTCGGAAGGAACCTGAACAAAAAGTG AAGCCTGAGGAGGATATATACTCATGTTCAGATTATTGAGACATTTTAAGGGCAGGTTGT ACGATCCCCCCTCCCGACCCCGTGCATGACTTTCAGCCTGAAGAGATTTTATATTACCGA GTGGAAATAACGTTGCTGAGCATGTACATAGTAATAAAAGAGGTTTATAGGCATGCAAGA TTTCCAGCCTGAATTGCACAAGAGGTCGTTGTAAGTCATTCTTTTGGTTAGGTTAAGTGA ATAATCCATCAACAGGATAAAGTTCTTGTAAATGTACACTTTCTTTGGCATATATAATAA AAATCTTACTAATTTCCGTTGGTCAAA