Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d032333_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:1:222798511:222804014:-1 gene:Zm00001d032333 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF1 chloroplastic
Sequence	ATGAACGAATCTTCTACTGGGGATGGAAAATTAGGTTTTGCTGTATTCTCCCCAAGGTTG CTAAGTTCTCAAGGATGGGCTCTTCTGTCCAATGAGAAAGGTGGACTCAATCAGAGTAGC ACTAACCTTGCCAATCGCGTAAGTGAGATTGTTGGTTTATATTCTGATGAAGACGATGAC AATGCTGAGTGGGCACATGGTAGCTTTCCTTTGGAAGAGTACATTAAAGCACTAGACCGT GCTAAAGGTGAACTGTACTATAATCATTCACTGGGTATGCAGTACAGCAAGATAACAGAA CAAATATTTGTTGGGTCATGTATACAAACAGAGAAAGATGTGAAGATGTTATCAGAAACT ATGGGTATTACTGCTGTTCTGAATTTCCAAAGTGAAAGCGAGCGCATTAACTGGGGAATC AATTCTGAGATAATCAACAGTTCCTGTCGTGAGAATAACATCTTGATGGTTAACTATCCT ATACGAGAGGTTGATTCATTGGACCTAAGAAAGAAGCTTCCTTTTTGTGTTGGTCTTCTG TTGCGTCTTATAAGGAAGAACTACCGCATATATGTGACTTGTACCACTGGATATGATAGA TCACCAGCATGTGTGATATCATACTTACACTGGGTTCAAGATACACCTCTCCATATTGCT CACAAGTTCATCACTGGTTTGCACTCTTGTAGACCTGACAGAGCTGCAATTGTTTGGGCA ACTTGGGATCTTATTGCTTTAGTTGAAAATGGAAGGCATGATGGTAGTCCCACACATTCA GTTTGTTTCATTTGGAACAGTGGTAGGGAGGGCGAGGATGTAGAGTTAGTTGGAGATTTT ACAAGTAACTGGAAAGACAAAATAAGGTGCAGCCACAAGGGTGGCTCAAGATATGAGGCT GAAGTTCGACTTCGACATGGAAAGTACTATTACAAATTTATAGTTGGGGGCCAATGGAGG CATTCGACTTCGTTGCCTACAGAAACAGATGAACATGGGAATGTCAACAATGTGATCAGA GTTGGCGACATTGCTCGGATTCGTCCTGCTCCAAGCCAGCTACATATAAAAGACCCATCT GTTGTTAAGGTCATAGAAAGGGCGCTAACTGAGGACGAGCGGTTTTTATTGGCGTTTGCA GCACGCCGCATGGCATTTGCAATCTGCCCAATCAGACTGTCCCCAAAGCAGTAG

Peptide Sequence

PEP ID	Zm00001d032333_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:1:222798511:222804014:-1 gene:Zm00001d032333 transcript:Zm00001d032333_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF1 chloroplastic
Sequence	MNESSTGDGKLGFAVFSPRLLSSQGWALLSNEKGGLNQSSTNLANRVSEIVGLYSDEDDD NAEWAHGSFPLEEYIKALDRAKGELYYNHSLGMQYSKITEQIFVGSCIQTEKDVKMLSET MGITAVLNFQSESERINWGINSEIINSSCRENNILMVNYPIREVDSLDLRKKLPFCVGLL LRLIRKNYRIYVTCTTGYDRSPACVISYLHWVQDTPLHIAHKFITGLHSCRPDRAAIVWA TWDLIALVENGRHDGSPTHSVCFIWNSGREGEDVELVGDFTSNWKDKIRCSHKGGSRYEA EVRLRHGKYYYKFIVGGQWRHSTSLPTETDEHGNVNNVIRVGDIARIRPAPSQLHIKDPS VVKVIERALTEDERFLLAFAARRMAFAICPIRLSPKQ

Transcript Sequence

Transcript ID	Zm00001d032333_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:222798511:222804014:-1 gene:Zm00001d032333 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phosphoglucan phosphatase LSF1 chloroplastic
Sequence	ACACACTTCCCATCCCCGGACGCCCACTCCAGTACTCCACTACGCCTCTGATCCCGTGCC GAGTGCCGCCATTTCCCGTGCCCCCCACCGCCGCCCCGCCGCCGACGCGATCCCCATCAC GCGCCGCCCATGGCGCCCCACCTACTCACCCCACCAGCCCTCACCGTTACGGGCGCCGCC GCCCCAGGTCGCCTCGGCAGCGCCGGATCGGCGGACCCGCGGACGCCCAGGCCACGCGCG CCGTGGCCCACTTTCTGCTCCTCCCCCAGCAGAGGGCGGCGGGAGCTGAGGAAGAGGAAG GGCTTGAGCGTCGCGGCGGCGGCGGAAGTAGCGGAGCCGGGTGGGCCCGCTGGGGCGATG CGGCTCAACGAGTACATGGTCGCTGTGGACCGGCCCCTCGGCGTCCGCTTCGCGCTTGGT GTCGACGGACGCGTCTTCGTCCATTCCCTTAGAAAAGGGGGAAACGCCGAGAAGTCCAGG ATCATCATGGTCGGCGACACGCTTAAGAAGGCAGGCGCCGACGGCGAAGGCCTCGTCACC ATCAAAGACCTAGGACTGCGCTGAGGGACAAGTCAGGACCATGCAGCCTTGTCCTTGAGA GACCATTTGCTCCTTTTCCAATCCATCAGTTGCATCAAAATGAAGATTACCACATTCTAT TTAACAGAGGACGAGCTGCTGTGGCCTCTTGGAACAGTGCTGTTTGGTCTACAAAGATGA ACGAATCTTCTACTGGGGATGGAAAATTAGGTTTTGCTGTATTCTCCCCAAGGTTGCTAA GTTCTCAAGGATGGGCTCTTCTGTCCAATGAGAAAGGTGGACTCAATCAGAGTAGCACTA ACCTTGCCAATCGCGTAAGTGAGATTGTTGGTTTATATTCTGATGAAGACGATGACAATG CTGAGTGGGCACATGGTAGCTTTCCTTTGGAAGAGTACATTAAAGCACTAGACCGTGCTA AAGGTGAACTGTACTATAATCATTCACTGGGTATGCAGTACAGCAAGATAACAGAACAAA TATTTGTTGGGTCATGTATACAAACAGAGAAAGATGTGAAGATGTTATCAGAAACTATGG GTATTACTGCTGTTCTGAATTTCCAAAGTGAAAGCGAGCGCATTAACTGGGGAATCAATT CTGAGATAATCAACAGTTCCTGTCGTGAGAATAACATCTTGATGGTTAACTATCCTATAC GAGAGGTTGATTCATTGGACCTAAGAAAGAAGCTTCCTTTTTGTGTTGGTCTTCTGTTGC GTCTTATAAGGAAGAACTACCGCATATATGTGACTTGTACCACTGGATATGATAGATCAC CAGCATGTGTGATATCATACTTACACTGGGTTCAAGATACACCTCTCCATATTGCTCACA AGTTCATCACTGGTTTGCACTCTTGTAGACCTGACAGAGCTGCAATTGTTTGGGCAACTT GGGATCTTATTGCTTTAGTTGAAAATGGAAGGCATGATGGTAGTCCCACACATTCAGTTT GTTTCATTTGGAACAGTGGTAGGGAGGGCGAGGATGTAGAGTTAGTTGGAGATTTTACAA GTAACTGGAAAGACAAAATAAGGTGCAGCCACAAGGGTGGCTCAAGATATGAGGCTGAAG TTCGACTTCGACATGGAAAGTACTATTACAAATTTATAGTTGGGGGCCAATGGAGGCATT CGACTTCGTTGCCTACAGAAACAGATGAACATGGGAATGTCAACAATGTGATCAGAGTTG GCGACATTGCTCGGATTCGTCCTGCTCCAAGCCAGCTACATATAAAAGACCCATCTGTTG TTAAGGTCATAGAAAGGGCGCTAACTGAGGACGAGCGGTTTTTATTGGCGTTTGCAGCAC GCCGCATGGCATTTGCAATCTGCCCAATCAGACTGTCCCCAAAGCAGTAGACGTGTCGGT CGTCCTTCTCCGAGCGGAACCAGGCGTCATCGAGGATCAGCGATTTTCGAAGCTACAGAA AACTCATGTATGTAACAACAGAGGGGCTTCTTACTGTATGTACCCGTTCACACAAAACCT GGAACGTGGCTAAGTGTCTCAGCAATGGGCACAATGTACACCTCTTTGTAATTCCATGGA CTGTATACCTGAAATGAACTCCATTTTAGACTG