Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032311_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:1:221834000:221837126:1 gene:Zm00001d032311 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase4 description: trehalose-6-phosphate synthase4
Sequence

ATGGTTTCAAAATCATACTCAAATCTGCTAGACCTGACCTCTGGAGATGGATTTGACTTT
CGACAACCTTTTAAGTCTCTTCCTCGTGTCGTAACTTCTCCTGGTATTATATCTGACACT
GATTGGGATACAATAAGTGATGGTGATTCAGTTGGTTCAGCATCTTCTACTGAGAGGAAA
ATAATCGTTGCCAACTTCCTTCCGTTGAATTGTACAAGAGATGAAACTGGGGTGCTTTCC
TTCTCATTGGATCATGATGCGCTTCTCATGCAACTTAAAGATAGTTTTTCAAATGAGACT
GATGTTGTGTATGTGGGCAGTTTGAAGGTTCAGGTAGATCCTGGTGAGCAGGACCAAGTT
GCACAGAAGCTTCTTAGAGAATATCGATGCATACCTACTTTTCTCCCATCTGACCTACAG
CAGCAGTTCTATCATGGCTTCTGTAAACAACAATTATGGCCACTTTTTCATTATATGCTT
CCAATTTGCCTTGACAAGGGTGAGCTATTTGATCGCAGCCTGTTTCAAGCTTATGTCCGA
GCCAACAAACTTTTTGCAGATAAAGTTATGGAAGCAATCAATGCAGATGATGACTTCGTT
TGGGTTCATGATTATCATCTCATGTTGCTCCCTACATTCTTGAGGAAGAGGTTACACCGA
ATAAAGATTGGTTTCTTCCTTCACAGTCCTTTTCCCTCCTCAGAAATCTATAGGACTCTG
CCTGTAAGGGATGAAATCCTGAAGTCACTGCTTAATGCTGATCTCATTGGTTTCCAAACA
TTTGACTATGCCCGCCACTTCCTATCTTGCTGTAGCAGATTGCTAGGCCTGCATTATGAG
TCAAAACGTGGTTACATTGGAATAGAGTATTTTGGCCGAACAGTGAGCCTGAAGATCCTT
TCCGTGGGTGTCCATATTGGTCGGCTTGAATCTGTCTTAAAATTGCCTGCTACAGTTAGT
AAGGTTCAAGAAATTGAACAAAGGTATAAGGGCAAGATACTGATGTTAGGTGTAGATGAC
ATGGACATCTTCAAAGGGATAAGTCTGAAATTTCTTGGACTGGAGCTTCTTCTGGACAGA
AACCCAAAGCTTAGAGAGAAGGTTGTCCTTGTACAAATCATCAATCCAGCAAGAAGCACA
GGGAAGGACGTGCAAGAAGCTATTACAGAAGCTGTCTCTGTGGCTGAAAGGATTAATACA
AATTATGGTTCTTCAAGTTACAAGCCTGTTGTCCTAATTGATCACCACATACCATTTTAT
GAAAAGATTGCATTCTATGCTGCGTCTGATTGCTGTATTGTAAATGCTGTGAGGGATGGC
ATGAACTTAGTACCATATGAGTATACTGTTTGCCGACAGGGAAATGAGGAGATTGATAAA
CTCAGAGGTCTTGGCAAAGACACCCATCACACAAGCACACTTATTGTTTCGGAGTTTGTG
GGTTGCTCCCCATCTCTTAGTGGTGCTTTCAGGGTAAATCCTTGGAGTGTCGATGATGTG
GCGGATGCCTTGTGCCGTGCAACTGATTTGACTGAATCCGAGAAACGGCTGCGGCATGAA
AAGCATTATCGCTATGTCAGTACTCATGATGTTGCTTACTGGGCACGCAGCTTTGCTCAA
GATCTGGAAAGAGCATGCAAAGATCATTATAGCAGAAGGTGTTGGGCGATTGGATTCGGT
CTGAATTTTAGAGTTATTGCTCTTTCTCCTGGCTTCAGAAAGCTGTCGTCAGAGCACTTT
GTTTCTTCTTATAACAAGGCTTCTAGAAGAGCAATATTTCTTGATTACGATGGCACACTT
GTGCCCCAGTCATCAATCAACAAAGCTCCAAGTGAAGAAGTCATTTCCGTTCTTAACACC
TTATGTAATGATCCAAAGAACATTGTGTTTATAGTAAGTGGACGAGGACGTGATTCCCTT
GATGAGTGGTTTTCTCCGTGTGAGAAGCTTGGTCTAGCGGCAGAACATGGCTATTTTATC
AGATGGAGCAAGGAAGCCGCATGGGAGTCAAGCTATTCAAGGCCGCAGCAAGAATGGAAG
CACATTGCCGAACCTGTGATGCAGGTATACACAGAGACAACAGATGGATCTTCAATCGAG
TCAAAGGAAAGCGCCCTAGTATGGCACTATTTGGACGCGGACCATGATTTCGGTTCCTTC
CAAGCAAAGGAGCTACAAGGTCATCTTGAGAGGGTGCTATCGAATGAGCCTGTTGTTGTG
AAGTGTGGTCATTATATTGTAGAGGTGAAACCACAGGGAGTTAGCAAGGGGCTTGCTGTC
AACAAGCTGATTCACACACTGGTCAAGAACGGGAAGGCACCGGATTTCCTGATGTGCGTC
GGCAACGACAGATCTGATGAGGACATGTTTGAAAGCATCAACGGTATGACCTCCAACGCT
GTCTTATCACCCACAATGCCGGAGCTGTTTGCCTGTTCAGTCGGTCAGAAGCCCAGCAAA
GCAAAATATTATGTGGACGACACCAGCGAAGTAATCAGATTGCTCAAGAATGTAACCCGC
ATCCCCTCGCAGCGGCAGGATGTCAGTGCCAGCCATGGGCGTGTGACCTTCAGAGGCGTG
CTCGATTACGTGGACTAG

Peptide Sequence

PEP ID

Zm00001d032311_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:1:221834000:221837126:1 gene:Zm00001d032311 transcript:Zm00001d032311_T009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase4 description: trehalose-6-phosphate synthase4
Sequence

MVSKSYSNLLDLTSGDGFDFRQPFKSLPRVVTSPGIISDTDWDTISDGDSVGSASSTERK
IIVANFLPLNCTRDETGVLSFSLDHDALLMQLKDSFSNETDVVYVGSLKVQVDPGEQDQV
AQKLLREYRCIPTFLPSDLQQQFYHGFCKQQLWPLFHYMLPICLDKGELFDRSLFQAYVR
ANKLFADKVMEAINADDDFVWVHDYHLMLLPTFLRKRLHRIKIGFFLHSPFPSSEIYRTL
PVRDEILKSLLNADLIGFQTFDYARHFLSCCSRLLGLHYESKRGYIGIEYFGRTVSLKIL
SVGVHIGRLESVLKLPATVSKVQEIEQRYKGKILMLGVDDMDIFKGISLKFLGLELLLDR
NPKLREKVVLVQIINPARSTGKDVQEAITEAVSVAERINTNYGSSSYKPVVLIDHHIPFY
EKIAFYAASDCCIVNAVRDGMNLVPYEYTVCRQGNEEIDKLRGLGKDTHHTSTLIVSEFV
GCSPSLSGAFRVNPWSVDDVADALCRATDLTESEKRLRHEKHYRYVSTHDVAYWARSFAQ
DLERACKDHYSRRCWAIGFGLNFRVIALSPGFRKLSSEHFVSSYNKASRRAIFLDYDGTL
VPQSSINKAPSEEVISVLNTLCNDPKNIVFIVSGRGRDSLDEWFSPCEKLGLAAEHGYFI
RWSKEAAWESSYSRPQQEWKHIAEPVMQVYTETTDGSSIESKESALVWHYLDADHDFGSF
QAKELQGHLERVLSNEPVVVKCGHYIVEVKPQGVSKGLAVNKLIHTLVKNGKAPDFLMCV
GNDRSDEDMFESINGMTSNAVLSPTMPELFACSVGQKPSKAKYYVDDTSEVIRLLKNVTR
IPSQRQDVSASHGRVTFRGVLDYVD

Transcript Sequence

Transcript ID

Zm00001d032311_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:221834000:221837126:1 gene:Zm00001d032311 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:trehalose-6-phosphate synthase4 description: trehalose-6-phosphate synthase4
Sequence

TTTGATACAGAGGCATAAACAATCTAGCCTAAGAGAAGAACACTGGAACCATGGTTTCAA
AATCATACTCAAATCTGCTAGACCTGACCTCTGGAGATGGATTTGACTTTCGACAACCTT
TTAAGTCTCTTCCTCGTGTCGTAACTTCTCCTGGTATTATATCTGACACTGATTGGGATA
CAATAAGTGATGGTGATTCAGTTGGTTCAGCATCTTCTACTGAGAGGAAAATAATCGTTG
CCAACTTCCTTCCGTTGAATTGTACAAGAGATGAAACTGGGGTGCTTTCCTTCTCATTGG
ATCATGATGCGCTTCTCATGCAACTTAAAGATAGTTTTTCAAATGAGACTGATGTTGTGT
ATGTGGGCAGTTTGAAGGTTCAGGTAGATCCTGGTGAGCAGGACCAAGTTGCACAGAAGC
TTCTTAGAGAATATCGATGCATACCTACTTTTCTCCCATCTGACCTACAGCAGCAGTTCT
ATCATGGCTTCTGTAAACAACAATTATGGCCACTTTTTCATTATATGCTTCCAATTTGCC
TTGACAAGGGTGAGCTATTTGATCGCAGCCTGTTTCAAGCTTATGTCCGAGCCAACAAAC
TTTTTGCAGATAAAGTTATGGAAGCAATCAATGCAGATGATGACTTCGTTTGGGTTCATG
ATTATCATCTCATGTTGCTCCCTACATTCTTGAGGAAGAGGTTACACCGAATAAAGATTG
GTTTCTTCCTTCACAGTCCTTTTCCCTCCTCAGAAATCTATAGGACTCTGCCTGTAAGGG
ATGAAATCCTGAAGTCACTGCTTAATGCTGATCTCATTGGTTTCCAAACATTTGACTATG
CCCGCCACTTCCTATCTTGCTGTAGCAGATTGCTAGGCCTGCATTATGAGTCAAAACGTG
GTTACATTGGAATAGAGTATTTTGGCCGAACAGTGAGCCTGAAGATCCTTTCCGTGGGTG
TCCATATTGGTCGGCTTGAATCTGTCTTAAAATTGCCTGCTACAGTTAGTAAGGTTCAAG
AAATTGAACAAAGGTATAAGGGCAAGATACTGATGTTAGGTGTAGATGACATGGACATCT
TCAAAGGGATAAGTCTGAAATTTCTTGGACTGGAGCTTCTTCTGGACAGAAACCCAAAGC
TTAGAGAGAAGGTTGTCCTTGTACAAATCATCAATCCAGCAAGAAGCACAGGGAAGGACG
TGCAAGAAGCTATTACAGAAGCTGTCTCTGTGGCTGAAAGGATTAATACAAATTATGGTT
CTTCAAGTTACAAGCCTGTTGTCCTAATTGATCACCACATACCATTTTATGAAAAGATTG
CATTCTATGCTGCGTCTGATTGCTGTATTGTAAATGCTGTGAGGGATGGCATGAACTTAG
TACCATATGAGTATACTGTTTGCCGACAGGGAAATGAGGAGATTGATAAACTCAGAGGTC
TTGGCAAAGACACCCATCACACAAGCACACTTATTGTTTCGGAGTTTGTGGGTTGCTCCC
CATCTCTTAGTGGTGCTTTCAGGGTAAATCCTTGGAGTGTCGATGATGTGGCGGATGCCT
TGTGCCGTGCAACTGATTTGACTGAATCCGAGAAACGGCTGCGGCATGAAAAGCATTATC
GCTATGTCAGTACTCATGATGTTGCTTACTGGGCACGCAGCTTTGCTCAAGATCTGGAAA
GAGCATGCAAAGATCATTATAGCAGAAGGTGTTGGGCGATTGGATTCGGTCTGAATTTTA
GAGTTATTGCTCTTTCTCCTGGCTTCAGAAAGCTGTCGTCAGAGCACTTTGTTTCTTCTT
ATAACAAGGCTTCTAGAAGAGCAATATTTCTTGATTACGATGGCACACTTGTGCCCCAGT
CATCAATCAACAAAGCTCCAAGTGAAGAAGTCATTTCCGTTCTTAACACCTTATGTAATG
ATCCAAAGAACATTGTGTTTATAGTAAGTGGACGAGGACGTGATTCCCTTGATGAGTGGT
TTTCTCCGTGTGAGAAGCTTGGTCTAGCGGCAGAACATGGCTATTTTATCAGATGGAGCA
AGGAAGCCGCATGGGAGTCAAGCTATTCAAGGCCGCAGCAAGAATGGAAGCACATTGCCG
AACCTGTGATGCAGGTATACACAGAGACAACAGATGGATCTTCAATCGAGTCAAAGGAAA
GCGCCCTAGTATGGCACTATTTGGACGCGGACCATGATTTCGGTTCCTTCCAAGCAAAGG
AGCTACAAGGTCATCTTGAGAGGGTGCTATCGAATGAGCCTGTTGTTGTGAAGTGTGGTC
ATTATATTGTAGAGGTGAAACCACAGGGAGTTAGCAAGGGGCTTGCTGTCAACAAGCTGA
TTCACACACTGGTCAAGAACGGGAAGGCACCGGATTTCCTGATGTGCGTCGGCAACGACA
GATCTGATGAGGACATGTTTGAAAGCATCAACGGTATGACCTCCAACGCTGTCTTATCAC
CCACAATGCCGGAGCTGTTTGCCTGTTCAGTCGGTCAGAAGCCCAGCAAAGCAAAATATT
ATGTGGACGACACCAGCGAAGTAATCAGATTGCTCAAGAATGTAACCCGCATCCCCTCGC
AGCGGCAGGATGTCAGTGCCAGCCATGGGCGTGTGACCTTCAGAGGCGTGCTCGATTACG
TGGACTAGGCACCACCACTTAGTTACTCGAAAAATTATTAGCTGGGAAGCATGTAAATTC
CACCGTCTTCTGCCTCTCAATGGTTCATTCTAGGAGGGTGTGTTAATCCAGAATTGTAGT
GTAGCCTACATGAATCGTCACCATTACACAAACAGCGTAAATGTGTTCGCCGTTTCAGGG
TTCAGGTGATGTGTGTAGGCAATTTTGGTAGGGAA