Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032188_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:216282926:216286250:1 gene:Zm00001d032188 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mannan synthase 7
Sequence

ATGTTCGACGCCGACTTCCAGCCTGACTCTGACTTCCTCCTCAGGACTATCCCGTTCCTC
GTGCACAACCCGGAGATCGCCCTCGTCCAGGCTCGCTGGAAGTTTGTTAATTCTGACGAG
TGTCTGCTGACAAGATTCCAAGAGATGTCGTTGGACTACCATTTCAAGTATGAGCAAGAG
GCCGGCTCCTCGGTGTATTCATTCTTTGGCTTCAATGGGACAGCTGGTGTCTGGAGGATC
TCAGCGATCGATGATGCTGGGGGCTGGAAGGACCGGACGACAGTGGAAGATATGGACCTG
GCTGTCCGTGCGATGCTGCAGGGATGGAAGTTCCTTTACGTCGGCGACATTAAGGTCAAG
AGCGAACTGCCTAGCACATTCAAGGCGTACCGGTTTCAGCAGCACAGGTGGTCATGTGGG
CCGGCGAACCTGTTCAAGAAAATGATGGTAGAGATTTTAGAAAACAAGAGAGTGTCGCTG
TGGAGTAAAATCCACCTATGGTACGATTTCTTCTTCGTCGGGAAAGTCGCTGCTCATACG
GTGACATTCATCTACTACTGCTTCGCGATCCCTGTGTCTGTTCTGTTCCCTGAGATCCAG
ATCCCTCTCTGGGGAGTTGTCTATGTCCCGACAGTCATAACCCTCTTGAAGGCTCTTGGC
ACACCGAGTTCCTTTCACCTGGTGATCCTCTGGGTCCTGTTTGAGAATGTCATGTCGTTG
CACCGGATTAAGGCTGCAGTAAGTGGTCTTCTGGATGCTGGTGGGCGAGTCAATGAGTGG
GTTGTCACTGAGAAGTTGGGCGACACCAGCAAGGCAAAGCCTGGCACCAATGGATCAGAC
ACTGCTGTAAAGGTGATAGATGTGAAGCTAACAGAACCGCTTGTTCCGAAGCTAGTGAAG
AGGCGAGCAAGATTTTGGGAGAGGTACCACTGCTCAGAACTTTTCGTTGGAACCTGCATA
ATCCTGTGTGGTTTCTATGACCTGCTTTTTGCAAATAAGGGATACTACATTTTTCTCTTC
CTTCAAGGCACGGCGTTCCTTGTTGTTGGTTTTGGGTATGTCGGCACACTACCTCCTTGC
ACTGCATAA

Peptide Sequence

PEP ID

Zm00001d032188_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:216282926:216286250:1 gene:Zm00001d032188 transcript:Zm00001d032188_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mannan synthase 7
Sequence

MFDADFQPDSDFLLRTIPFLVHNPEIALVQARWKFVNSDECLLTRFQEMSLDYHFKYEQE
AGSSVYSFFGFNGTAGVWRISAIDDAGGWKDRTTVEDMDLAVRAMLQGWKFLYVGDIKVK
SELPSTFKAYRFQQHRWSCGPANLFKKMMVEILENKRVSLWSKIHLWYDFFFVGKVAAHT
VTFIYYCFAIPVSVLFPEIQIPLWGVVYVPTVITLLKALGTPSSFHLVILWVLFENVMSL
HRIKAAVSGLLDAGGRVNEWVVTEKLGDTSKAKPGTNGSDTAVKVIDVKLTEPLVPKLVK
RRARFWERYHCSELFVGTCIILCGFYDLLFANKGYYIFLFLQGTAFLVVGFGYVGTLPPC
TA

Transcript Sequence

Transcript ID

Zm00001d032188_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:216282926:216286250:1 gene:Zm00001d032188 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable mannan synthase 7
Sequence

GCGCGGGCACGATTGGGTCCCCTCCCGCCCCAGACGTATTACTGGGCTGGATGTGGGCTG
TACTGCAAGCTTAGCGTGTACTCATGGGCTCGCTCGCCCTAGACGAACTCCGGCGAGGCC
CCGCCGCCAACGCCGGCCATGGCACGACGCGCGAGCGCCGGGATCCCGAGGGCGTCACGG
CCAGGCGGCGGGGTGTCACGCGCGCCTCATAAGGGCGCGGGCGTCTGCTGCCTTGCTGTC
GGAGGACCTGGTGGAGACGGAGTGCCAGAGGTGGAAGAGCAAAGGCGTGAACATAAAGTA
CGAGGTGAGGGGGAACCGGAAGGGGTACAAGGCCGGCGCGCTCAAGGAAGGACTGAAGCA
CGACTACGTCGCAGACTGCGAATACATCGCCATGTTCGACGCCGACTTCCAGCCTGACTC
TGACTTCCTCCTCAGGACTATCCCGTTCCTCGTGCACAACCCGGAGATCGCCCTCGTCCA
GGCTCGCTGGAAGTTTGTTAATTCTGACGAGTGTCTGCTGACAAGATTCCAAGAGATGTC
GTTGGACTACCATTTCAAGTATGAGCAAGAGGCCGGCTCCTCGGTGTATTCATTCTTTGG
CTTCAATGGGACAGCTGGTGTCTGGAGGATCTCAGCGATCGATGATGCTGGGGGCTGGAA
GGACCGGACGACAGTGGAAGATATGGACCTGGCTGTCCGTGCGATGCTGCAGGGATGGAA
GTTCCTTTACGTCGGCGACATTAAGGTCAAGAGCGAACTGCCTAGCACATTCAAGGCGTA
CCGGTTTCAGCAGCACAGGTGGTCATGTGGGCCGGCGAACCTGTTCAAGAAAATGATGGT
AGAGATTTTAGAAAACAAGAGAGTGTCGCTGTGGAGTAAAATCCACCTATGGTACGATTT
CTTCTTCGTCGGGAAAGTCGCTGCTCATACGGTGACATTCATCTACTACTGCTTCGCGAT
CCCTGTGTCTGTTCTGTTCCCTGAGATCCAGATCCCTCTCTGGGGAGTTGTCTATGTCCC
GACAGTCATAACCCTCTTGAAGGCTCTTGGCACACCGAGTTCCTTTCACCTGGTGATCCT
CTGGGTCCTGTTTGAGAATGTCATGTCGTTGCACCGGATTAAGGCTGCAGTAAGTGGTCT
TCTGGATGCTGGTGGGCGAGTCAATGAGTGGGTTGTCACTGAGAAGTTGGGCGACACCAG
CAAGGCAAAGCCTGGCACCAATGGATCAGACACTGCTGTAAAGGTGATAGATGTGAAGCT
AACAGAACCGCTTGTTCCGAAGCTAGTGAAGAGGCGAGCAAGATTTTGGGAGAGGTACCA
CTGCTCAGAACTTTTCGTTGGAACCTGCATAATCCTGTGTGGTTTCTATGACCTGCTTTT
TGCAAATAAGGGATACTACATTTTTCTCTTCCTTCAAGGCACGGCGTTCCTTGTTGTTGG
TTTTGGGTATGTCGGCACACTACCTCCTTGCACTGCATAAGCTGTCATGGACAACTGATA
TTACCTGCTCACCAGAAACTGAGCAAGCAAAGCTCCTCTCTCCTGCACATATCAAACTCT
TGAATTCAATGATAGTTGAGCAATGTTCCCCCATCAGTCTTGGCCTGACATGATCCACCG
CCGAGAAGGTTGTTCAGATATCGCCGTCGTTCTCCTGTCAGTGTTGGTCAGATTTGAGCC
AAACCATTCTTTATTGTCAGAAGGCCATTCAAATAGTGTCACCATTGCAAATTTTATAAT
AACGGTGTTTACCGAAGCATCATGAAAAGAAAAATGATTGGTGCAGCAGCATTTCGTTCG
CATTCCATAGAGATGCAGTTCACATCCAGTATTTTTTTTTGGAAATCTAGTGTTATTACT
CAGAGTTCAGATCCATAATGGAAGATTGTTGGCTTCCTCAGTTCATAACCTGTGTAGGCT
TAAAACTTGTAGATGTAAATTGTTATTAACACTAATATTTTTTATTGAATCCGGGTATTA
TTGAAATGCAAGTGTAGCATGCATTTCTTTTCCTGTAAGAAGCCAAAGATGACTTCTGAG
TAACACGTCTAATCAGACATTTTACT