Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032099_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:1:212686911:212697629:-1 gene:Zm00001d032099 gene_biotype:protein_coding transcript_biotype:protein_coding description:sec34-like family protein
Sequence

ATGGCGACGCCGCCGCCGGCGGCGACGGCGTCCGCGCTTCCCAAGTCTGGGGCGGTATCC
AAGGGCTACAACTTTGCATCCACTTGGGAACAGAGCGCGCCGCTCACGGAGCAGCAGAAG
GCCGCGATCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAACCTGGAA
AAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCTGCTTTGGAGGAG
GCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGTTCTACAAGTGGTTTTCAGAA
CTGGAGTCAGCTATGAAATCTGAGACTGAGGAAAAATATCGACTTTATGAGAATACATTA
CAGGAGCGTGTCAACACATGTGACGTAATCCTTAAGCAGGTTGATGATACATTGAGCTTA
TTTGAAGAACTGCAGTCTTTGCACTCAAGCGTTGCCACGAAGACAAAAACTTTGCATGAT
GCTTGCGACCAACTTTTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCACTTCGA
AGCAGGCTCAATTACTTTGATGAATTAGAAAATGTATCAAGCAGCTTTTACTCTCAAAAT
ATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGTATCTCG
TATGTTGAAAACAACCCGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTTCGCCAA
CTTCAATCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAAGGTGCT
TCATCCCAGGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTCACAGAG
GGTGTGGAGGCATCTCTTATCTATGTTCGCTTCAAGGCGGCTGCTAGCGAGCTAAAACCA
ATATTAGGTGAAATTGAAAGTAGATCTTCTAGGAAGGAGTACGCACAGATTCTTTCTGAG
TGTCACAGTTTGTTCTGTGAGCAGCGGCTGTACTTGGTACGAGGCATGGTGCAGCAACGA
ATCTTGGAGTTTGCAAGAAAAGAGGCCTTGCCTTCTTTGACAAGGTCTGGCTGTGCCTAT
CTGATGGAGGCATGCCAGTTTGAGCACCAGCTTTTTGCCCACTTCTTCCCAGCATCTGCT
GCTGATGTTTCTAGTATGGCTCCTTTAATGGACCCTCTGTGCACCTACTTGTATGATACT
CTGAGGCCTAGACTGATATATGAAGGAAACATTGATTCTCTTTGCGAACTTGTTGATATT
CTGAAAGTTGAAGTGCTGGGGGAACAACTAAGCAGACGCGGTGAATCAGTAGCCGGTCTC
CGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGTGCTCGG
ACTCATATCCGTGAAGAGATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGATTATCCT
GGGAAACTTGAACGACCTGTGGATATGTCTTCAAGTGCTACTGTTAGTTTGCTTCTCACT
TTAGTCGCGATTGGTTCTTGCCAACCTTTTCTGTTCCAACATACTCTCCAGTTACAAAAA
CAGTATCATTTCTGGACATCTAATTTTTGA

Peptide Sequence

PEP ID

Zm00001d032099_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:1:212686911:212697629:-1 gene:Zm00001d032099 transcript:Zm00001d032099_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:sec34-like family protein
Sequence

MATPPPAATASALPKSGAVSKGYNFASTWEQSAPLTEQQKAAIAALSHAVAERPFPPNLE
KSSGKDEGLAVPEKESALEEAGAIDAVLVNTHQFYKWFSELESAMKSETEEKYRLYENTL
QERVNTCDVILKQVDDTLSLFEELQSLHSSVATKTKTLHDACDQLLVEKQRLIEFAEALR
SRLNYFDELENVSSSFYSQNMNIGNEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQ
LQSRALGMIRSHVLSILKGASSQVQAAIRSSDSGKNIVTEGVEASLIYVRFKAAASELKP
ILGEIESRSSRKEYAQILSECHSLFCEQRLYLVRGMVQQRILEFARKEALPSLTRSGCAY
LMEACQFEHQLFAHFFPASAADVSSMAPLMDPLCTYLYDTLRPRLIYEGNIDSLCELVDI
LKVEVLGEQLSRRGESVAGLRPILQRILADVHERLAFCARTHIREEIANFRPSVEDLDYP
GKLERPVDMSSSATVSLLLTLVAIGSCQPFLFQHTLQLQKQYHFWTSNF

Transcript Sequence

Transcript ID

Zm00001d032099_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:212686911:212697629:-1 gene:Zm00001d032099 gene_biotype:protein_coding transcript_biotype:protein_coding description:sec34-like family protein
Sequence

CTCGAGAACTCGTTCGCTCGCTACGTTTCCCTCCGCTTGCCGAGTGCTGCGCGGGAGCAC
GCGCCCATGGCGACGCCGCCGCCGGCGGCGACGGCGTCCGCGCTTCCCAAGTCTGGGGCG
GTATCCAAGGGCTACAACTTTGCATCCACTTGGGAACAGAGCGCGCCGCTCACGGAGCAG
CAGAAGGCCGCGATCGCCGCGCTCTCCCACGCCGTGGCGGAGCGGCCATTCCCGCCCAAC
CTGGAAAAAAGTTCAGGGAAGGATGAAGGCTTGGCTGTTCCCGAGAAAGAATCTGCTTTG
GAGGAGGCCGGTGCAATAGATGCAGTCTTGGTGAATACACATCAGTTCTACAAGTGGTTT
TCAGAACTGGAGTCAGCTATGAAATCTGAGACTGAGGAAAAATATCGACTTTATGAGAAT
ACATTACAGGAGCGTGTCAACACATGTGACGTAATCCTTAAGCAGGTTGATGATACATTG
AGCTTATTTGAAGAACTGCAGTCTTTGCACTCAAGCGTTGCCACGAAGACAAAAACTTTG
CATGATGCTTGCGACCAACTTTTGGTTGAGAAACAAAGGCTGATCGAGTTTGCAGAGGCA
CTTCGAAGCAGGCTCAATTACTTTGATGAATTAGAAAATGTATCAAGCAGCTTTTACTCT
CAAAATATGAACATTGGAAATGAACAGTTTCTTCCACTGTTGAAGCGCCTTGATGATTGT
ATCTCGTATGTTGAAAACAACCCGCAATATGCTGAATCTGCTGTTTATTTGGTCAAATTT
CGCCAACTTCAATCTCGTGCACTGGGTATGATTCGCTCACATGTGTTGTCAATACTTAAA
GGTGCTTCATCCCAGGTTCAAGCTGCAATTCGAAGCAGCGATTCTGGCAAAAACATTGTC
ACAGAGGGTGTGGAGGCATCTCTTATCTATGTTCGCTTCAAGGCGGCTGCTAGCGAGCTA
AAACCAATATTAGGTGAAATTGAAAGTAGATCTTCTAGGAAGGAGTACGCACAGATTCTT
TCTGAGTGTCACAGTTTGTTCTGTGAGCAGCGGCTGTACTTGGTACGAGGCATGGTGCAG
CAACGAATCTTGGAGTTTGCAAGAAAAGAGGCCTTGCCTTCTTTGACAAGGTCTGGCTGT
GCCTATCTGATGGAGGCATGCCAGTTTGAGCACCAGCTTTTTGCCCACTTCTTCCCAGCA
TCTGCTGCTGATGTTTCTAGTATGGCTCCTTTAATGGACCCTCTGTGCACCTACTTGTAT
GATACTCTGAGGCCTAGACTGATATATGAAGGAAACATTGATTCTCTTTGCGAACTTGTT
GATATTCTGAAAGTTGAAGTGCTGGGGGAACAACTAAGCAGACGCGGTGAATCAGTAGCC
GGTCTCCGTCCAATATTGCAAAGGATACTTGCAGATGTTCATGAGCGGCTAGCATTTTGT
GCTCGGACTCATATCCGTGAAGAGATTGCAAATTTCCGTCCTTCTGTCGAAGATCTAGAT
TATCCTGGGAAACTTGAACGACCTGTGGATATGTCTTCAAGTGCTACTGTTAGTTTGCTT
CTCACTTTAGTCGCGATTGGTTCTTGCCAACCTTTTCTGTTCCAACATACTCTCCAGTTA
CAAAAACAGTATCATTTCTGGACATCTAATTTTTGACCGGGTACTTTGACCACCAATTAC
CTGTATGATATATATGCTCTATCTGACCCAAAATGGCACTCATTTGTTACAATTAGATAT
GTTTTTATTGTTGAAGTGTATAAGTGAATTGTCTACCAAAGCCAGAGGTCTCGAGTTTGA
ATGCTGACAGAGACTTTATTTATGCATTCACCCATTTATTTT