Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d032060_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:211112390:211116374:-1 gene:Zm00001d032060 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase RSH2 chloroplastic
Sequence

ATGTCCGTGCCGGCGATAGCCGTGTACACCAGCCCGCCCGGCGCCGTCTACGCGCCGCCG
GAGCTCGAGTCCAGCTCGCGCGGCTCGGCGCCGTGCGCGGCCGCGGCGTCCCCGTCAGCG
CCGAGCTCCCACCGCCACGCGGCCGTCGCGGGCGGCTTGTCCTGCCTATTTTCGTCCCCG
TCCGCGGCCCCGCGGGCAACGGCGCACGAGGAGCTCGGCGCGCTCTGGCACGACAGATCC
GATGAGCCGCCCTCCGTCGCCGGGGGCTTCGGCGGCGGGGGCTACTCGTACCCCCAGTCG
TCGCCGTCGCCGCTCAAGCTGCGGGACCACCTCCACCGCAGCCCGGTGTCTCTGTTCCAC
ACCCCTGCCTCCTCCCCGGCGTCCAGGAGCCCCTCGGTTTCCTGGCTCGCTGGCCGTGAG
CGCGAGCGCCTCTTCTCTAGCTTCGTGCGCAACGCGCTTGGCTCCTGCATTGACTACGCA
CCGGTCACCAGCTTCCCGCTGGGTGTGCGCCCCGCGGCCACTGGTGTCGACGCCGCGGAG
CTGGCCTTCGAGCTTGACGAAAACCTCTCTGAGGCGGAGCCGTCCTGCGAACCTGATGCT
CATGAACTCCTCGCCGGCGCCCAGGCTCGCCACCACATCTTCCGCGACGAGCTTGTCGTC
AAGGCCTTCAAGGAGGCCGAGCGGGCACACCGTGGCCAGAAGCGGGCTAGTGGTGATCCA
TACTTGCAGCATTGTGTGGAGACTGCGGTTCATCTGGCCAATATTGGTGCAAACGCAACC
GTTGTGTCTGCTGGCCTTCTCCATGACACAATTGATGATTCGTTCATGGACTATGATCAT
ATCTTCAGGATGTTTGGTGCTGGTGTGGCCGATCTTGTTGAAGGGGTTTCGAAGTTAAGC
CATTTGAGCAAACTTGCTCGGGACAACAATACTGCAAGTAGGACTGTTGAAGCTGATCGC
CTGCATACAATGTTTCTTGCAATGGCTGATGCACGAGCTGTTCTTATAAAGTTAGCAGAT
CGTCTGCACAACATGAATACGATAGAAGCTTTGCCTTTGGTTAAACAACAAAGGTTTGCT
AAAGAGACTATGGAAATATTTGTGCCATTGGCCAACCGATTAGGAATTGCTAGCTGGAAA
GACCACTTGGAGAATATTTGCTTCAAACACTTGAACCCAGAGGAGCACAAGGAGCTTTCC
TCTAAACTTCTGATGTCTTTTGATGAAGCACTTCTTACATCTACGCTTCATAACTTGGAT
AAAAGCCTTAGAGATGAAGGCATTTCATATCACAGTCTTTCTGGAAGGCACAAGAGTTTG
TACAGTATATACTCCAAGATGATAAAGAAGAACTTAACAATGGACGATGTCCATGACATC
CATGGTCTACGGCTTGTGGTTGAAACAGAGGAAGATTGTTATCGAGCACTTGACATAGTG
CACAAGCTGTGGCCCCGAGTTACCGGAAGATTTAAAGACTATATTTGTCATCCGAAGTTG
AATGGGTATCGGTCGCTGCACACTGTCATCATGTGTGAGGGTGTCCATCCATTTGAAATC
CAGATCCGAACAAAGGAAATGCACCTACAGGCTGAATATGGATTCGCAGCGCACTGGAGG
TACAAAGAAGGTGGCTGCAGGCATTCCTTTGTGCTCCAAATGGTGGAATGGGCGAGGTGG
GTGCTCACATGGCAATGCGAGACATTGAGCAAAGAGCGTCCCTCGTCTTTGAGCAGTTCT
GTTGGCATAAGGCCACCATGCCCTTTTCCCCTGCATTCGGAAGATTGCTCCTACTCTTAC
AGCCGACAGTGCAACTATGAAGGCCCTATATTTGTCATCATGCTTGAACATGACAAGATG
TCTGTCCAAGAGCTCCCAGCCAACTCGACTGTAGTTGATCTAATGGAGCGAGTCGGGGCC
AACAGTCCGAGATGGAGCCCTTGCAGCTTCCCACTGAAAGAGGAGCTGCGACCGAGGGTT
AACCACAAGCCCATAAGCGACCCAAATAGGAAGCTCAGCATGGGCGACGTGGTGGAGCTG
ACGCCTGCGCTCCCTGACAAGTCGCTGTCCGAGTACCGGGAGGAGATCCAGCGCATGTAT
GAGCGGGGAGGGTTTGCGCTCGCCACCACCCCTAGAAGCTGA

Peptide Sequence

PEP ID

Zm00001d032060_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:211112390:211116374:-1 gene:Zm00001d032060 transcript:Zm00001d032060_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase RSH2 chloroplastic
Sequence

MSVPAIAVYTSPPGAVYAPPELESSSRGSAPCAAAASPSAPSSHRHAAVAGGLSCLFSSP
SAAPRATAHEELGALWHDRSDEPPSVAGGFGGGGYSYPQSSPSPLKLRDHLHRSPVSLFH
TPASSPASRSPSVSWLAGRERERLFSSFVRNALGSCIDYAPVTSFPLGVRPAATGVDAAE
LAFELDENLSEAEPSCEPDAHELLAGAQARHHIFRDELVVKAFKEAERAHRGQKRASGDP
YLQHCVETAVHLANIGANATVVSAGLLHDTIDDSFMDYDHIFRMFGAGVADLVEGVSKLS
HLSKLARDNNTASRTVEADRLHTMFLAMADARAVLIKLADRLHNMNTIEALPLVKQQRFA
KETMEIFVPLANRLGIASWKDHLENICFKHLNPEEHKELSSKLLMSFDEALLTSTLHNLD
KSLRDEGISYHSLSGRHKSLYSIYSKMIKKNLTMDDVHDIHGLRLVVETEEDCYRALDIV
HKLWPRVTGRFKDYICHPKLNGYRSLHTVIMCEGVHPFEIQIRTKEMHLQAEYGFAAHWR
YKEGGCRHSFVLQMVEWARWVLTWQCETLSKERPSSLSSSVGIRPPCPFPLHSEDCSYSY
SRQCNYEGPIFVIMLEHDKMSVQELPANSTVVDLMERVGANSPRWSPCSFPLKEELRPRV
NHKPISDPNRKLSMGDVVELTPALPDKSLSEYREEIQRMYERGGFALATTPRS

Transcript Sequence

Transcript ID

Zm00001d032060_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:211112390:211116374:-1 gene:Zm00001d032060 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable GTP diphosphokinase RSH2 chloroplastic
Sequence

ACGGATTCGCCGGGGTAATCTCGCCACGGCCGTGCTTTGACGCCGAATTCGTGCTCTGTA
GGTTCAATTGACCCCACCACCGCCCGCTGCTGCTTCGTTTCTAGCTCGAGAGAGTTTAGT
GGGTTGCTTGATTCCGAAGCTCCGAGCTCGTGGGATTGAATTGAGCCCCCCCAAGATCAG
AATTGGAGCAGCGGGTTTTGGTTTCCTGCTTGGTGCCGCTGATTGGAGTACGCTTCTTTT
GTGGTGGTTGAGAGGCTGCTCGGCTTCCGCCGACCATGTCCGTGCCGGCGATAGCCGTGT
ACACCAGCCCGCCCGGCGCCGTCTACGCGCCGCCGGAGCTCGAGTCCAGCTCGCGCGGCT
CGGCGCCGTGCGCGGCCGCGGCGTCCCCGTCAGCGCCGAGCTCCCACCGCCACGCGGCCG
TCGCGGGCGGCTTGTCCTGCCTATTTTCGTCCCCGTCCGCGGCCCCGCGGGCAACGGCGC
ACGAGGAGCTCGGCGCGCTCTGGCACGACAGATCCGATGAGCCGCCCTCCGTCGCCGGGG
GCTTCGGCGGCGGGGGCTACTCGTACCCCCAGTCGTCGCCGTCGCCGCTCAAGCTGCGGG
ACCACCTCCACCGCAGCCCGGTGTCTCTGTTCCACACCCCTGCCTCCTCCCCGGCGTCCA
GGAGCCCCTCGGTTTCCTGGCTCGCTGGCCGTGAGCGCGAGCGCCTCTTCTCTAGCTTCG
TGCGCAACGCGCTTGGCTCCTGCATTGACTACGCACCGGTCACCAGCTTCCCGCTGGGTG
TGCGCCCCGCGGCCACTGGTGTCGACGCCGCGGAGCTGGCCTTCGAGCTTGACGAAAACC
TCTCTGAGGCGGAGCCGTCCTGCGAACCTGATGCTCATGAACTCCTCGCCGGCGCCCAGG
CTCGCCACCACATCTTCCGCGACGAGCTTGTCGTCAAGGCCTTCAAGGAGGCCGAGCGGG
CACACCGTGGCCAGAAGCGGGCTAGTGGTGATCCATACTTGCAGCATTGTGTGGAGACTG
CGGTTCATCTGGCCAATATTGGTGCAAACGCAACCGTTGTGTCTGCTGGCCTTCTCCATG
ACACAATTGATGATTCGTTCATGGACTATGATCATATCTTCAGGATGTTTGGTGCTGGTG
TGGCCGATCTTGTTGAAGGGGTTTCGAAGTTAAGCCATTTGAGCAAACTTGCTCGGGACA
ACAATACTGCAAGTAGGACTGTTGAAGCTGATCGCCTGCATACAATGTTTCTTGCAATGG
CTGATGCACGAGCTGTTCTTATAAAGTTAGCAGATCGTCTGCACAACATGAATACGATAG
AAGCTTTGCCTTTGGTTAAACAACAAAGGTTTGCTAAAGAGACTATGGAAATATTTGTGC
CATTGGCCAACCGATTAGGAATTGCTAGCTGGAAAGACCACTTGGAGAATATTTGCTTCA
AACACTTGAACCCAGAGGAGCACAAGGAGCTTTCCTCTAAACTTCTGATGTCTTTTGATG
AAGCACTTCTTACATCTACGCTTCATAACTTGGATAAAAGCCTTAGAGATGAAGGCATTT
CATATCACAGTCTTTCTGGAAGGCACAAGAGTTTGTACAGTATATACTCCAAGATGATAA
AGAAGAACTTAACAATGGACGATGTCCATGACATCCATGGTCTACGGCTTGTGGTTGAAA
CAGAGGAAGATTGTTATCGAGCACTTGACATAGTGCACAAGCTGTGGCCCCGAGTTACCG
GAAGATTTAAAGACTATATTTGTCATCCGAAGTTGAATGGGTATCGGTCGCTGCACACTG
TCATCATGTGTGAGGGTGTCCATCCATTTGAAATCCAGATCCGAACAAAGGAAATGCACC
TACAGGCTGAATATGGATTCGCAGCGCACTGGAGGTACAAAGAAGGTGGCTGCAGGCATT
CCTTTGTGCTCCAAATGGTGGAATGGGCGAGGTGGGTGCTCACATGGCAATGCGAGACAT
TGAGCAAAGAGCGTCCCTCGTCTTTGAGCAGTTCTGTTGGCATAAGGCCACCATGCCCTT
TTCCCCTGCATTCGGAAGATTGCTCCTACTCTTACAGCCGACAGTGCAACTATGAAGGCC
CTATATTTGTCATCATGCTTGAACATGACAAGATGTCTGTCCAAGAGCTCCCAGCCAACT
CGACTGTAGTTGATCTAATGGAGCGAGTCGGGGCCAACAGTCCGAGATGGAGCCCTTGCA
GCTTCCCACTGAAAGAGGAGCTGCGACCGAGGGTTAACCACAAGCCCATAAGCGACCCAA
ATAGGAAGCTCAGCATGGGCGACGTGGTGGAGCTGACGCCTGCGCTCCCTGACAAGTCGC
TGTCCGAGTACCGGGAGGAGATCCAGCGCATGTATGAGCGGGGAGGGTTTGCGCTCGCCA
CCACCCCTAGAAGCTGACACCATCGTCGCCATGTTAACCTGCTGCTGTGTGTAACGCTTT
TTACAAGTTGAAATGTGGCCAAGTTCCTC