Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d032029_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:1:209942797:209947996:-1 gene:Zm00001d032029 gene_biotype:protein_coding transcript_biotype:protein_coding description:HEC/Ndc80p family protein
Sequence	ATGCGGCGCGGCGGCGGTCGCCGGTTCCCCAAGCCCTCCTTGGCGCCCTCCACCGCGGCC GAGGCCACCCCGGCGCTGGACGCCAGCGTCATCCGCAACCTCGACTCCGCCTTCTCCCGC CGCGACTCCGACGCCAACAGCCTCTGCAGCAGCCGTCCCGCTTCTACCGTCGGCGCCATC CTCAACTTCTCCGACCGCGCCACGCAGGTCGCCGCGCTCCGCGTCGTCAACACATTCCTC GCCCCCGCCGTCACGCTCCGGGGGCCTCTGCCCGCCGCGCGCGACATCCAGGCGGCGCTC CGCCTCCTCGTCGACCGTCTCCACTTGCCCCGCAACGACGCCACATTCGATGATGACCTC ATCCAGGACCTTCGCCTTCTCGGATGCCCCTACAAGGTCACCCGCTCCGCACTCAAGGCC CCCGGCACCCCGCACTCGTGGCCGGTACTGCTCTCCGTACTCCACTGGCTCACCCTCCTC TGCCACTCCCAAGGAGACGACCCGGATGCCCCGAGCGGCCCATCCGACGATCTCTTGCTC TACATCACCCAGTCGTACTCCCACTTCTTGTCGGGGGACGACGCCGCCGTCGAAACCGTC GACGAGGAGTACGCCTCCAAAGCCCGGATGACCGGTGAGGCGTACGTTGCAACGGCTCGT GCCCTGGAGAAGGAGGCTGAGGAACTGGAGACCCAGGTGAATAAGCTCATCTCGGGTCCC TCGCGGCGGGAAGCACTGGAGTCAGAGAAGGAGGCCTTCAATGCTGATATTCACAAGTTC GACGCAGTGGTGAATGCTTGGAAAACTAAGTTCAATGAAAGGGAACAATCGTTTGGGGAT TTGGAGAAAGAGTTGGAGGCAAAAGTGTCGGACACCCAGCGCGCTGCTGCTGAAATTCAG GATCTATTGAAACAAGTGGATGCTCAGCCGGTGAATGTGAAGGATGTGGATAGAATGCGT AGGGAGATGCAGGCTATTGAAGATGACATTGCCAACGCCGAGAAGGGGAAAACAGCACTG GAGGATAAGGTCTGGGAACTTGAAGCTAAGCTGGTTACCAAGCTTGAGGAGCTTGAGAGG CATGCTGAGCAGTGCAACCAGGCCCTCAAAAAGTTGAAACCTACTGTTGCTTTTCAGTAC ATGATAGATTCAAAAGGATCTTCTCCTGCTGAGATGCTAGGTACTGGTTACAAAACAGTA CTAAAACCTGCACTTCTGGCTCATGCTGAGGAGAACAAAAGGATCTGTCTCTCAAATCTT GAAAACTTAAATGATCTACAGAAGCAGCTGCAAGGAAATGCTAAGGTTCTAGAGGAGGAA AGGAATAATATTTCCAGTCTCCAGGAAAAAAATGACGAAATCGTTGCTCGTTTGAATTTA CTGGATCGTGAAATTATAAATGATGACTCAAGATTCACATCTGAAGCTGCACAAATGAAA GATGAGTTGGAGAAAAAGAAGAATAGTTTGATTTCTGCTGAAAAGCAGGCAGATGATTTT CTTAAGAAATCGGAGAAGAGGCTCCAAGATGTAACACTTAAAGTTGAAGAAGAAACTCAG GCAGCTGCTAAGGAGCTGCTGGAGCTTCTTGATTCCATGGCTGAACATAAAGAGTTCATG GAAACAACAATTGCTCAGAGGAGGAAGGACCTCTATGAAACTGCAGATTATATAGCATCT GTGGCATCCAAGACAGTCATCACCCAAGTACCGAACCCTGCTGAATCCTGA

Peptide Sequence

PEP ID	Zm00001d032029_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:1:209942797:209947996:-1 gene:Zm00001d032029 transcript:Zm00001d032029_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:HEC/Ndc80p family protein
Sequence	MRRGGGRRFPKPSLAPSTAAEATPALDASVIRNLDSAFSRRDSDANSLCSSRPASTVGAI LNFSDRATQVAALRVVNTFLAPAVTLRGPLPAARDIQAALRLLVDRLHLPRNDATFDDDL IQDLRLLGCPYKVTRSALKAPGTPHSWPVLLSVLHWLTLLCHSQGDDPDAPSGPSDDLLL YITQSYSHFLSGDDAAVETVDEEYASKARMTGEAYVATARALEKEAEELETQVNKLISGP SRREALESEKEAFNADIHKFDAVVNAWKTKFNEREQSFGDLEKELEAKVSDTQRAAAEIQ DLLKQVDAQPVNVKDVDRMRREMQAIEDDIANAEKGKTALEDKVWELEAKLVTKLEELER HAEQCNQALKKLKPTVAFQYMIDSKGSSPAEMLGTGYKTVLKPALLAHAEENKRICLSNL ENLNDLQKQLQGNAKVLEEERNNISSLQEKNDEIVARLNLLDREIINDDSRFTSEAAQMK DELEKKKNSLISAEKQADDFLKKSEKRLQDVTLKVEEETQAAAKELLELLDSMAEHKEFM ETTIAQRRKDLYETADYIASVASKTVITQVPNPAES

Transcript Sequence

Transcript ID	Zm00001d032029_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:209942797:209947996:-1 gene:Zm00001d032029 gene_biotype:protein_coding transcript_biotype:protein_coding description:HEC/Ndc80p family protein
Sequence	GCACGCGCCACGCCGCGCTCGCCTTTTCCCTGCAGCCGGCGCCGCTCCGCGCCCCATTTC CAAAACAAAACAACCCCAAGTCCCCAACCCAGTTTCAAACAAACTAGATCCGCGGCGACC ATGCGGCGCGGCGGCGGTCGCCGGTTCCCCAAGCCCTCCTTGGCGCCCTCCACCGCGGCC GAGGCCACCCCGGCGCTGGACGCCAGCGTCATCCGCAACCTCGACTCCGCCTTCTCCCGC CGCGACTCCGACGCCAACAGCCTCTGCAGCAGCCGTCCCGCTTCTACCGTCGGCGCCATC CTCAACTTCTCCGACCGCGCCACGCAGGTCGCCGCGCTCCGCGTCGTCAACACATTCCTC GCCCCCGCCGTCACGCTCCGGGGGCCTCTGCCCGCCGCGCGCGACATCCAGGCGGCGCTC CGCCTCCTCGTCGACCGTCTCCACTTGCCCCGCAACGACGCCACATTCGATGATGACCTC ATCCAGGACCTTCGCCTTCTCGGATGCCCCTACAAGGTCACCCGCTCCGCACTCAAGGCC CCCGGCACCCCGCACTCGTGGCCGGTACTGCTCTCCGTACTCCACTGGCTCACCCTCCTC TGCCACTCCCAAGGAGACGACCCGGATGCCCCGAGCGGCCCATCCGACGATCTCTTGCTC TACATCACCCAGTCGTACTCCCACTTCTTGTCGGGGGACGACGCCGCCGTCGAAACCGTC GACGAGGAGTACGCCTCCAAAGCCCGGATGACCGGTGAGGCGTACGTTGCAACGGCTCGT GCCCTGGAGAAGGAGGCTGAGGAACTGGAGACCCAGGTGAATAAGCTCATCTCGGGTCCC TCGCGGCGGGAAGCACTGGAGTCAGAGAAGGAGGCCTTCAATGCTGATATTCACAAGTTC GACGCAGTGGTGAATGCTTGGAAAACTAAGTTCAATGAAAGGGAACAATCGTTTGGGGAT TTGGAGAAAGAGTTGGAGGCAAAAGTGTCGGACACCCAGCGCGCTGCTGCTGAAATTCAG GATCTATTGAAACAAGTGGATGCTCAGCCGGTGAATGTGAAGGATGTGGATAGAATGCGT AGGGAGATGCAGGCTATTGAAGATGACATTGCCAACGCCGAGAAGGGGAAAACAGCACTG GAGGATAAGGTCTGGGAACTTGAAGCTAAGCTGGTTACCAAGCTTGAGGAGCTTGAGAGG CATGCTGAGCAGTGCAACCAGGCCCTCAAAAAGTTGAAACCTACTGTTGCTTTTCAGTAC ATGATAGATTCAAAAGGATCTTCTCCTGCTGAGATGCTAGGTACTGGTTACAAAACAGTA CTAAAACCTGCACTTCTGGCTCATGCTGAGGAGAACAAAAGGATCTGTCTCTCAAATCTT GAAAACTTAAATGATCTACAGAAGCAGCTGCAAGGAAATGCTAAGGTTCTAGAGGAGGAA AGGAATAATATTTCCAGTCTCCAGGAAAAAAATGACGAAATCGTTGCTCGTTTGAATTTA CTGGATCGTGAAATTATAAATGATGACTCAAGATTCACATCTGAAGCTGCACAAATGAAA GATGAGTTGGAGAAAAAGAAGAATAGTTTGATTTCTGCTGAAAAGCAGGCAGATGATTTT CTTAAGAAATCGGAGAAGAGGCTCCAAGATGTAACACTTAAAGTTGAAGAAGAAACTCAG GCAGCTGCTAAGGAGCTGCTGGAGCTTCTTGATTCCATGGCTGAACATAAAGAGTTCATG GAAACAACAATTGCTCAGAGGAGGAAGGACCTCTATGAAACTGCAGATTATATAGCATCT GTGGCATCCAAGACAGTCATCACCCAAGTACCGAACCCTGCTGAATCCTGATACCTGAAT TATGCAGTAATCTTTTCGCATAGAAAGTTCATCATAGCAGGCCTGCCTACCGTGGCAGCC TTCTCTGGCATGTAATATAAGTTGAAGTTGTCCCACTTGAAGCTGTGGTCTTTTTTGGCC TTGGACTTTGGTTTGCGTTCTGGTGAGGTAGTAGTTGGTATGTTCGGGCTTCAATCCTAG ATGTCATGAAACTGTTGTAATTTCATTGCTTCAGTAATGAACTTTGGATTGGTCCTCTGT GAAAAAGTACCCAACCCTCTTGGTGTTTGTTT