Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031891_T022
CDS Infomation

cds chromosome:B73_RefGen_v4:1:205435284:205441385:1 gene:Zm00001d031891 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M1 family protein
Sequence

ATGTACAAGACCATGTTTGGAGCATCAGGGTTCCGAAAGGGCATGGATCTTTATTTTAAA
AGGCATGATGGGCAAGCTGTCACTTGTGAAGACTTCTATGCAGCCATGTGTGATGCAAAT
AATGCACAACTGCCAAACTTTTTACAATGGTACTCTCAAGCAGGTACGCCTATAGTCAAG
GTGGCATCTTCATATGATCCTAGTTCTCAGACATTCTCTTTGAAACTTAGCCAAGAAGTA
CCACCCACTCCTGGCCAGCCGGTTAAGGAGCCTATGTTCATACCTGTTGCTGTTGGACTT
GTTGACTCTACTGGAAAAGATATGCCCCTCACTTCCGTTTACAGTGATGGAAGTCTCCAA
ACAGTCTCTACTGATGGCCAGCCAGTCTTCACTACTGTGCTTCAGTTTAAAAAGAAAGAA
GAAGAGTTTATGTTTAAAAACATTCCTGAGAGGCCAGTTCCTTCTTTGTTAAGGGGATAT
AGTGCTCCTGTCCGTCTAGATTCTGATCTGAGTGAGGGTGACCTATTTTTCTTGCTTGCC
AGTGACTCGGATGAATTTAACAGATGGGAAGCTGGCCAAGTTTTGGCACGTAAGTTGATG
CTCAGTCTCGTAGCTGATTTCCAGCAACAGAAAACACTGGTTCTAAATCCGAAATTTGTT
GATGGGATTAGATCAATTCTGCGCAACACAAGCTTGGATAAGGAATTCATTGCGAAAGCA
ATAACTTTGCCTGGTCAAGGGGAGATTATGGATATGATGGAAGTTGCAGATCCTGATGCA
GTTCATGCTGTCCGTAACTTTATTAAGAAGGAGCTTGCCGTGCAACTTAAAGATGATCTT
CTTGCGGCTGTGAAAAGCAACAGGAGTTCTGAGGCTTACACATTTAACCATGATAGTATG
GCTCGCCGTGCATTAAAAAATACATGCCTTGCATACCTTGCGTCATTGAATGAGCCAGAT
TTCGTTGAGCTTGCACTGCATGAGTACAAGTCTGCGACTAACATGACAGAGCAGTTTGCT
GCATTAGCAGCATTATCCCAAAATCCAGGCCAAGTTCGTGATGATGCCCTCTTGGATTTC
TATAACAAGTGGCAGCATGAATACTTGGTTGTAAGCAAGTGGTTTGCTCTTCAAGCTACT
TCAGAGATTCCTGGAAATGTTGCAAATGTTCAGAAGCTGCTGTCTCACCCTGCTTTCGAC
CTGAGGAATCCCAACAAGGTGTACTCACTAATCGGGGGATTCTGTGGCTCACCTGTGAAC
TTCCACGCGAAAGATGGTTCTGGGTACAAGTTCTTGGGTGAGATCGTTTTGCAGCTTGAC
AAGATAAACCCTCAGGTGGCCTCCCGCATGGTTTCAGCATTTTCTCGGTGGAGGCGGTAC
GACAAGACCAGACAAGCTCTTGCTAAGGCCCAGCTGGAGATGATCGTGTCGGCCAATGGG
CTCTCCGAAAACGTGTTCGAGATTGCTTCAAAAAGCTTGGCGGATTAG

Peptide Sequence

PEP ID

Zm00001d031891_P022
PEP Infomation

pep chromosome:B73_RefGen_v4:1:205435284:205441385:1 gene:Zm00001d031891 transcript:Zm00001d031891_T022 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M1 family protein
Sequence

MYKTMFGASGFRKGMDLYFKRHDGQAVTCEDFYAAMCDANNAQLPNFLQWYSQAGTPIVK
VASSYDPSSQTFSLKLSQEVPPTPGQPVKEPMFIPVAVGLVDSTGKDMPLTSVYSDGSLQ
TVSTDGQPVFTTVLQFKKKEEEFMFKNIPERPVPSLLRGYSAPVRLDSDLSEGDLFFLLA
SDSDEFNRWEAGQVLARKLMLSLVADFQQQKTLVLNPKFVDGIRSILRNTSLDKEFIAKA
ITLPGQGEIMDMMEVADPDAVHAVRNFIKKELAVQLKDDLLAAVKSNRSSEAYTFNHDSM
ARRALKNTCLAYLASLNEPDFVELALHEYKSATNMTEQFAALAALSQNPGQVRDDALLDF
YNKWQHEYLVVSKWFALQATSEIPGNVANVQKLLSHPAFDLRNPNKVYSLIGGFCGSPVN
FHAKDGSGYKFLGEIVLQLDKINPQVASRMVSAFSRWRRYDKTRQALAKAQLEMIVSANG
LSENVFEIASKSLAD

Transcript Sequence

Transcript ID

Zm00001d031891_T022
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:205435284:205441385:1 gene:Zm00001d031891 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M1 family protein
Sequence

AGTATTTCCACAACTGGACTGGGAATAGAGTAACTTGCCGTGATTGGTTCCAGCTAACCC
TGAAAGAAGGACTGACCGTTTTCAGGGATCAGGAGTTCTCTTCAGATCTTGGCTGTCGTA
CGGTAAAACGTATTGCTGATGTCTCCAAACTTAGAATCTATCAATTCCCACAGGACGCCG
GGCCTATGGCACATCCTATCCGTCCCCATTCTTATATCAAGATGGACAACTTCTATACTG
GTGTTTGGTATAGGGTGCTGAAGTTGTCAGAATGTACAAGACCATGTTTGGAGCATCAGG
GTTCCGAAAGGGCATGGATCTTTATTTTAAAAGGCATGATGGGCAAGCTGTCACTTGTGA
AGACTTCTATGCAGCCATGTGTGATGCAAATAATGCACAACTGCCAAACTTTTTACAATG
GTACTCTCAAGCAGGTACGCCTATAGTCAAGGTGGCATCTTCATATGATCCTAGTTCTCA
GACATTCTCTTTGAAACTTAGCCAAGAAGTACCACCCACTCCTGGCCAGCCGGTTAAGGA
GCCTATGTTCATACCTGTTGCTGTTGGACTTGTTGACTCTACTGGAAAAGATATGCCCCT
CACTTCCGTTTACAGTGATGGAAGTCTCCAAACAGTCTCTACTGATGGCCAGCCAGTCTT
CACTACTGTGCTTCAGTTTAAAAAGAAAGAAGAAGAGTTTATGTTTAAAAACATTCCTGA
GAGGCCAGTTCCTTCTTTGTTAAGGGGATATAGTGCTCCTGTCCGTCTAGATTCTGATCT
GAGTGAGGGTGACCTATTTTTCTTGCTTGCCAGTGACTCGGATGAATTTAACAGATGGGA
AGCTGGCCAAGTTTTGGCACGTAAGTTGATGCTCAGTCTCGTAGCTGATTTCCAGCAACA
GAAAACACTGGTTCTAAATCCGAAATTTGTTGATGGGATTAGATCAATTCTGCGCAACAC
AAGCTTGGATAAGGAATTCATTGCGAAAGCAATAACTTTGCCTGGTCAAGGGGAGATTAT
GGATATGATGGAAGTTGCAGATCCTGATGCAGTTCATGCTGTCCGTAACTTTATTAAGAA
GGAGCTTGCCGTGCAACTTAAAGATGATCTTCTTGCGGCTGTGAAAAGCAACAGGAGTTC
TGAGGCTTACACATTTAACCATGATAGTATGGCTCGCCGTGCATTAAAAAATACATGCCT
TGCATACCTTGCGTCATTGAATGAGCCAGATTTCGTTGAGCTTGCACTGCATGAGTACAA
GTCTGCGACTAACATGACAGAGCAGTTTGCTGCATTAGCAGCATTATCCCAAAATCCAGG
CCAAGTTCGTGATGATGCCCTCTTGGATTTCTATAACAAGTGGCAGCATGAATACTTGGT
TGTAAGCAAGTGGTTTGCTCTTCAAGCTACTTCAGAGATTCCTGGAAATGTTGCAAATGT
TCAGAAGCTGCTGTCTCACCCTGCTTTCGACCTGAGGAATCCCAACAAGGTGTACTCACT
AATCGGGGGATTCTGTGGCTCACCTGTGAACTTCCACGCGAAAGATGGTTCTGGGTACAA
GTTCTTGGGTGAGATCGTTTTGCAGCTTGACAAGATAAACCCTCAGGTGGCCTCCCGCAT
GGTTTCAGCATTTTCTCGGTGGAGGCGGTACGACAAGACCAGACAAGCTCTTGCTAAGGC
CCAGCTGGAGATGATCGTGTCGGCCAATGGGCTCTCCGAAAACGTGTTCGAGATTGCTTC
AAAAAGCTTGGCGGATTAGCTTGGGCAGTTCCGAGGAATTGCGAGTGGGAGTGCTTAACT
GAATCTCTCTTTTGTTGGTAAAATGACAAGTAGAGATAATAAACAGGCGGGCCGAATTTG
CATGAACTGATAAAATATAAGTGTGATGATGCCCGCTTTGTGGGGGGCTTTGG