Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d031863_T038
CDS Infomation	cds chromosome:B73_RefGen_v4:1:204518693:204537518:-1 gene:Zm00001d031863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 15a
Sequence	ATGGACGGCGCCGCCAACTGGCGTCCCACGCAGGGAGCCGACCCTGCCACCGTCGCTGCT GTCGGCGGCGTCGACCCTAACGCGGCTGCCCCCACCGGAAGCGACTGGCGCACCCAGCTT CAGCCCGAGGCGCGCCAGAGGATCGTCAATAAGATAATGGAGACTCTGAAGAAGCACCTG CCAGTATCAGTACCGGAGGGGCTGACTGAGCTTCACAAAATTGCCGTGCGATTTGAAGAG AAAATCTATACTGCCGCCACCAGCCAGTCTGATTATCTGAGGAAGATTTCTCTGAAAATG CTGTCCATGGAAAGCCAGAAAAAGACACAACAGAACCCTGGAAATGCTCAAGTGATTCCA AATCAAAACCCTCCTGGTCCAGGTAGTAATCCAGCACAGTCATCAGCTATCCCGTTGATG TCTCAGCAACAGACACGGCAGCCAAATGCTTCTACATCCGTTCAAGGTTCTCTTCCTAGT GTTGGTCAGAACTTGTCGAGTGTCAGCCAGACATTGACGCTGCAGAATCTGTCTGGCATG CCACAAAATACCATGAACAATGGTTTAGCACAAGGTACTCCACAAGATATGTATGCTGCA CAAAGACAAATGGCAGGTAGGCAGCAGCAGCAACAACAACAGCAAGCACATAATCAGTTT ATGTATCAACAGCAGAAATTGTTGATGAACCAGAAATTGCAGCAGAATTCACGTATGCAA CCACACATTCAGCAGCAGCAAACTTTGTTGCAGTCAACACAGATGCAATCTTCACAGCAG CCCATGGTGCAAATGTCATCTGGCCTTCAGCCTGGGCAGATTGCCATTCCACAAACTCAA TCCATGGCGATGCAGTCAGCTACACAGAGTGGTATTCAACAGAATGCACTGAATTCGGTA CAACAACCTGTGCAATCGTTACTCCAGCAGCCTACACCGTCTGTGGTAAGGCAGCAGCAA CATCCACAGTCCATGCACCAGCAGTCTTCTCTGCAGCAAACTCAACCAACTCAACAGCCC AACATTCCTTTGCAACAGCAGCCACAACAATTAATGGGCCATCAGTCAAATTTACAGCAA AATCAGTTAGTGAATCAACAGAGTGGTGCTGTGGAGATGCAACAGCAACAAAGGCTACCA GTTCAGTCAACTAATCTTTTGAATATGCATCAAACGCAGCAGATGATGAACCAGCAATCT ATGCCCTTGCACCAGCCACAACAATTGGCAAACCAGGGAAATGTGTCAAGTCTAAATCAG CAGCAGCAGCAGCTTCTTGGAACCGTGCCAAATGTCCGTATGCATATGTTACAGCAACAA AAGCCAATTCAGCAACCACAGCAGCAACAGCATGCTCAGCAGACATCAATGGGTTTGATG CAACCTCAGTCTCAGCAGAATCAGCTTCAGCAACCTCAACAACATATGATGTCGCAGTTC CAGTCTCAGCCTAATCAAACGCAGCAACAATTGGGAATGCAACAAAGGCTCCAGACTTCA GCTGGCATGCTCTTGCAACAAAATAATATTGATCAACAAAAGCAGTACGTTCAGGCACAG AAGGTCCTCCAAGAAGCACCCAGTACATCTGTGGATTCCACTGCTCAAACTGGTCATCCA GGGACAGGTGATTCGCAAGAGGAGTTATATCAAATGATTAAGAGTTTAAAGGACCAATAC TTTGCGGAATTGAATGATGTGTACAATAAGATATCCATGAAGATACAAAATATTGACAAC CACATGCCCGCTCAAAAGTCAGCGGAGCAGTATGAAAGGCTGAAAGGCTTTAAAGGAATG TTGGAGCGCATATTGCATTTCCTGCAAGCTAACAAGAGCAGCATTCAGCCAGGTTTTAGG GAAAAAATCTCTATTTTCGAGAGGCAAATTCTCAGTATCATGAGTTCACAAAGAAGGAAG CCTGTGCAGGCACCTGGACAGCAAACGTTTCAGCAATCTGGTGGGCAAGCTCCTAGCTCT AATATGTCACAGCAGCATCAGACTTCCCAAGGTTTGCAGCAGCATGATAGTCATACTAAT CAGATGCCTCAAGCAAGTTTACCAAGTATGAACACAGGAGTACCGACCTCTGGAGCACCT GGCATTCAGCATGTACCTGCGCCTCAAGCATCAAACTTTGGTGTTCCAACAACACAGCAA AATGTCACAAATGCACCGCAGGCTGCCTCTAATCCGGAGAATGCTCAGGGAAATAATTTT AATCCTGTGCAGCATGGTTCAATGGGTACTGCATTGCAACAGGGAAGCACTGGTCCCATG CAGGGTGCATTGAATGCACAGCATCAGTCCAATAGTAACATGATATCCAACAATGCAATG AGTACAATGCAGACTAATACCAATGCCATGCAAGCAAACGTGAATTCATTGCAGCAGCTA AAGCAACATCAGGAGCATCAGATGATGCAAAATCAGCAAATGAAGCAGCGTCAGCAGATG CTGCAGCAGATGCAGCAAAAGAAAATACTTCAACAACAGCTCCCAATACAACAACTACAG AAACAACAGCAGCAAGGGCCGATTCAGGTTCAACAACTTCATTCTGGAAATGATGTGAAT GAGCTAAAGGTCAGGCAAGGAGCTGCAATCAAATCTGGAATGTATCAACCGCTGAACCAG CGTAACTATTATCAGCAGATAAAACGGGGGGATGTCTTTCCAATTTCTTCTCCGCAAAAC CTCCAAGCATCGTCCCCACAAATTTCACACTATTCTCATGTTGATCAGCACAGTCTGTTG CAATCTCAAGTGAAAACCGGGACACCGTTGCATTCAGCTAACTCACCATTTGTCCCATCT CCATCTCCTCCTGTTGCCCCATCACCGGTCCCACTGGATTCAGATAAACCACTCTCCAAC CTATCTTCACTCACTAGTGCTGGGCAGGCTGGACATCAGCAAACATCCCTTGCACCTCTA ACACAATCTATAGCTGTTAACACACCAGGTATATCAGCGTCACCCTTGCTTGCAGAATTC ACAAGTGCTGATGGAGGTCAGGTTAGCGTACCAACTCAAGTTCCAACAAAATCAAGCGCA GCAGAAAGGCCTCTCGATCGCTTGCTTAAAGCAGTAAAGATACCATGTTAA

Peptide Sequence

PEP ID	Zm00001d031863_P038
PEP Infomation	pep chromosome:B73_RefGen_v4:1:204518693:204537518:-1 gene:Zm00001d031863 transcript:Zm00001d031863_T038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 15a
Sequence	MDGAANWRPTQGADPATVAAVGGVDPNAAAPTGSDWRTQLQPEARQRIVNKIMETLKKHL PVSVPEGLTELHKIAVRFEEKIYTAATSQSDYLRKISLKMLSMESQKKTQQNPGNAQVIP NQNPPGPGSNPAQSSAIPLMSQQQTRQPNASTSVQGSLPSVGQNLSSVSQTLTLQNLSGM PQNTMNNGLAQGTPQDMYAAQRQMAGRQQQQQQQQAHNQFMYQQQKLLMNQKLQQNSRMQ PHIQQQQTLLQSTQMQSSQQPMVQMSSGLQPGQIAIPQTQSMAMQSATQSGIQQNALNSV QQPVQSLLQQPTPSVVRQQQHPQSMHQQSSLQQTQPTQQPNIPLQQQPQQLMGHQSNLQQ NQLVNQQSGAVEMQQQQRLPVQSTNLLNMHQTQQMMNQQSMPLHQPQQLANQGNVSSLNQ QQQQLLGTVPNVRMHMLQQQKPIQQPQQQQHAQQTSMGLMQPQSQQNQLQQPQQHMMSQF QSQPNQTQQQLGMQQRLQTSAGMLLQQNNIDQQKQYVQAQKVLQEAPSTSVDSTAQTGHP GTGDSQEELYQMIKSLKDQYFAELNDVYNKISMKIQNIDNHMPAQKSAEQYERLKGFKGM LERILHFLQANKSSIQPGFREKISIFERQILSIMSSQRRKPVQAPGQQTFQQSGGQAPSS NMSQQHQTSQGLQQHDSHTNQMPQASLPSMNTGVPTSGAPGIQHVPAPQASNFGVPTTQQ NVTNAPQAASNPENAQGNNFNPVQHGSMGTALQQGSTGPMQGALNAQHQSNSNMISNNAM STMQTNTNAMQANVNSLQQLKQHQEHQMMQNQQMKQRQQMLQQMQQKKILQQQLPIQQLQ KQQQQGPIQVQQLHSGNDVNELKVRQGAAIKSGMYQPLNQRNYYQQIKRGDVFPISSPQN LQASSPQISHYSHVDQHSLLQSQVKTGTPLHSANSPFVPSPSPPVAPSPVPLDSDKPLSN LSSLTSAGQAGHQQTSLAPLTQSIAVNTPGISASPLLAEFTSADGGQVSVPTQVPTKSSA AERPLDRLLKAVKIPC

Transcript Sequence

Transcript ID	Zm00001d031863_T038
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:204518693:204537518:-1 gene:Zm00001d031863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mediator of RNA polymerase II transcription subunit 15a
Sequence	GGCTGTATCATAACTGTTGTTAGGGTTGTACATGTTCCGCTGGTTATTGATCCGCGATTT GCTGGCTCATTCAGCAGCATCCTGATTCGTTAGGCGTGCCGCGTGAGCCTTGCTCGCTCC AATCGATTTCGTCGTCGTCCGCTCGTCGCTAGCTCCTTCTTGGTCGCTCCTTCGCCCCTG CTACAATCGATTTCGTCGTCTTCAGCGAGGAGCTGGGGAGTGATTGAACGAAGCCAGCGC TCCCTCCATTGTCGCCCCGCAGATCGATCGAAGTCAGCAACCAGATCAGAAAGAGCAAAA GAGGCGCCCGAGTCTCTACGGCGGAAAGCCATGGACGGCGCCGCCAACTGGCGTCCCACG CAGGGAGCCGACCCTGCCACCGTCGCTGCTGTCGGCGGCGTCGACCCTAACGCGGCTGCC CCCACCGGAAGCGACTGGCGCACCCAGCTTCAGCCCGAGGCGCGCCAGAGGATCGTCAAT AAGATAATGGAGACTCTGAAGAAGCACCTGCCAGTATCAGTACCGGAGGGGCTGACTGAG CTTCACAAAATTGCCGTGCGATTTGAAGAGAAAATCTATACTGCCGCCACCAGCCAGTCT GATTATCTGAGGAAGATTTCTCTGAAAATGCTGTCCATGGAAAGCCAGAAAAAGACACAA CAGAACCCTGGAAATGCTCAAGTGATTCCAAATCAAAACCCTCCTGGTCCAGGTAGTAAT CCAGCACAGTCATCAGCTATCCCGTTGATGTCTCAGCAACAGACACGGCAGCCAAATGCT TCTACATCCGTTCAAGGTTCTCTTCCTAGTGTTGGTCAGAACTTGTCGAGTGTCAGCCAG ACATTGACGCTGCAGAATCTGTCTGGCATGCCACAAAATACCATGAACAATGGTTTAGCA CAAGGTACTCCACAAGATATGTATGCTGCACAAAGACAAATGGCAGGTAGGCAGCAGCAG CAACAACAACAGCAAGCACATAATCAGTTTATGTATCAACAGCAGAAATTGTTGATGAAC CAGAAATTGCAGCAGAATTCACGTATGCAACCACACATTCAGCAGCAGCAAACTTTGTTG CAGTCAACACAGATGCAATCTTCACAGCAGCCCATGGTGCAAATGTCATCTGGCCTTCAG CCTGGGCAGATTGCCATTCCACAAACTCAATCCATGGCGATGCAGTCAGCTACACAGAGT GGTATTCAACAGAATGCACTGAATTCGGTACAACAACCTGTGCAATCGTTACTCCAGCAG CCTACACCGTCTGTGGTAAGGCAGCAGCAACATCCACAGTCCATGCACCAGCAGTCTTCT CTGCAGCAAACTCAACCAACTCAACAGCCCAACATTCCTTTGCAACAGCAGCCACAACAA TTAATGGGCCATCAGTCAAATTTACAGCAAAATCAGTTAGTGAATCAACAGAGTGGTGCT GTGGAGATGCAACAGCAACAAAGGCTACCAGTTCAGTCAACTAATCTTTTGAATATGCAT CAAACGCAGCAGATGATGAACCAGCAATCTATGCCCTTGCACCAGCCACAACAATTGGCA AACCAGGGAAATGTGTCAAGTCTAAATCAGCAGCAGCAGCAGCTTCTTGGAACCGTGCCA AATGTCCGTATGCATATGTTACAGCAACAAAAGCCAATTCAGCAACCACAGCAGCAACAG CATGCTCAGCAGACATCAATGGGTTTGATGCAACCTCAGTCTCAGCAGAATCAGCTTCAG CAACCTCAACAACATATGATGTCGCAGTTCCAGTCTCAGCCTAATCAAACGCAGCAACAA TTGGGAATGCAACAAAGGCTCCAGACTTCAGCTGGCATGCTCTTGCAACAAAATAATATT GATCAACAAAAGCAGTACGTTCAGGCACAGAAGGTCCTCCAAGAAGCACCCAGTACATCT GTGGATTCCACTGCTCAAACTGGTCATCCAGGGACAGGTGATTCGCAAGAGGAGTTATAT CAAATGATTAAGAGTTTAAAGGACCAATACTTTGCGGAATTGAATGATGTGTACAATAAG ATATCCATGAAGATACAAAATATTGACAACCACATGCCCGCTCAAAAGTCAGCGGAGCAG TATGAAAGGCTGAAAGGCTTTAAAGGAATGTTGGAGCGCATATTGCATTTCCTGCAAGCT AACAAGAGCAGCATTCAGCCAGGTTTTAGGGAAAAAATCTCTATTTTCGAGAGGCAAATT CTCAGTATCATGAGTTCACAAAGAAGGAAGCCTGTGCAGGCACCTGGACAGCAAACGTTT CAGCAATCTGGTGGGCAAGCTCCTAGCTCTAATATGTCACAGCAGCATCAGACTTCCCAA GGTTTGCAGCAGCATGATAGTCATACTAATCAGATGCCTCAAGCAAGTTTACCAAGTATG AACACAGGAGTACCGACCTCTGGAGCACCTGGCATTCAGCATGTACCTGCGCCTCAAGCA TCAAACTTTGGTGTTCCAACAACACAGCAAAATGTCACAAATGCACCGCAGGCTGCCTCT AATCCGGAGAATGCTCAGGGAAATAATTTTAATCCTGTGCAGCATGGTTCAATGGGTACT GCATTGCAACAGGGAAGCACTGGTCCCATGCAGGGTGCATTGAATGCACAGCATCAGTCC AATAGTAACATGATATCCAACAATGCAATGAGTACAATGCAGACTAATACCAATGCCATG CAAGCAAACGTGAATTCATTGCAGCAGCTAAAGCAACATCAGGAGCATCAGATGATGCAA AATCAGCAAATGAAGCAGCGTCAGCAGATGCTGCAGCAGATGCAGCAAAAGAAAATACTT CAACAACAGCTCCCAATACAACAACTACAGAAACAACAGCAGCAAGGGCCGATTCAGGTT CAACAACTTCATTCTGGAAATGATGTGAATGAGCTAAAGGTCAGGCAAGGAGCTGCAATC AAATCTGGAATGTATCAACCGCTGAACCAGCGTAACTATTATCAGCAGATAAAACGGGGG GATGTCTTTCCAATTTCTTCTCCGCAAAACCTCCAAGCATCGTCCCCACAAATTTCACAC TATTCTCATGTTGATCAGCACAGTCTGTTGCAATCTCAAGTGAAAACCGGGACACCGTTG CATTCAGCTAACTCACCATTTGTCCCATCTCCATCTCCTCCTGTTGCCCCATCACCGGTC CCACTGGATTCAGATAAACCACTCTCCAACCTATCTTCACTCACTAGTGCTGGGCAGGCT GGACATCAGCAAACATCCCTTGCACCTCTAACACAATCTATAGCTGTTAACACACCAGGT ATATCAGCGTCACCCTTGCTTGCAGAATTCACAAGTGCTGATGGAGGTCAGGTTAGCGTA CCAACTCAAGTTCCAACAAAATCAAGCGCAGCAGAAAGGCCTCTCGATCGCTTGCTTAAA GCAGTAAAGATACCATGTTAAAGTTGGTGCAATGTATTTTTTTATCAGCTAGTCCTTGAT ATGATGGTCAATATTGCCTAGTCAGATTTCATTCTACTTCTGGCTCTTGTTGCCTACCTG AAATTGTGTAAGCAGCATAAGTCGGTTTCAATGGTTTCAAGTCGCTCGACTAGCTAGTCG AGACACCCGACCAGGCGACTAATCGCGATTAGTCGACGATTAGGTCGACTAATCGGGTCC TAGTCGACCTGATCGTCCCTATTGGTCCTCCTGCATATTTACAGGTACAGGACCTATATA TACATTATATATATGTGTAATAATGTAATATTGATATATATACGCATAGCATATAGCAAT ATAGCATATAGGAGGCAATATCAAAGTAACCAAATTACCAAACAAAACAAATATGAATAC CAGAACTGGACAGTGGAGAGTGGACAATTCTGATTTCAGAACACCATTGAACATTCAAAT TTCAGAACATCATAGAAATTTTGAGAACAACACAGCCTGAGTCCCTTAGTGCTGCAGTTA GCGATATTGGATCTGTCGTGAGTATGATTGACAGGATTGCTGGATCAGCGCCTGGTAATG GTTCCAGAGCTGCTGTGGGTGAAGATCTTGTCGCTATGACAAAGTGCCGCTTGCAAGCCA GGAACTTCATAACCCATGATGGGAGTGGTGCATCAAAGAGAATGAAGCGGGACACAGGTG CTATGCCTCTTAATGTGTCATCCGCTGGAAGTTTGAATGACAGCTTGAAGCAATCATATA CTGTTGGCACTCCAGAGCTACAATCAACTGCAACCTCACGTGTCAAGTGTCAAAGGGCTG AGGTAAACCATGTTCTGTTAGAGGAGATTCAGGAGATAAACAAACAGCTTATAGATACAG AGCTCCATGTCTCTGAGGATGATGCTGAGTCCTTCACTACATCTGATATGGCCGAAGGGA CAGTCATTAAATGCACATTCACTGCTGTTGCTGTTAGCCCCAGCTTGAAATCCATGTTTG CTTCAGCGCAGATGAGTCCAATTTTGCCGTTGAGGTTGCTTGTTCCTGGTAGCTACCCAA AATGCTCCCCGGTGCTTCTAGACAAGTTTCCTGATGAACAATGCAGGAACTCGGATGACC TGTCTACGAAGGCCAAGTCAAAGTTCAGTGTGTTGCTCCGGGGTCTAGCTGAGCCCATGT CATTGCGAGAAATCGCAAGGACGTGGGATGCTTGCGCCCGGAAAGTGATTGCAGAGTATG CCCAGCAAACTGGAGGAGGCAGTTTCAGCTCGAGCTATGGTTGCTGGGAAAGCTGCGTTG GCGCTTCATAAGTTTATTGTATCTATTACTCCGTAGTATATTTATTATTCTTTATTACAC TAAGCATTTATGTGTTG