Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031854_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:204238448:204241415:1 gene:Zm00001d031854 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thiaminase2 description: thiaminase2
Sequence

ATGGCACAAAAGAACAATGCACTCCAAATAGAAGAATTGCTGGACAAACTGAGTGTATCA
TTAACTGGTGAGGAACTTGAGATTATTGGCAAGCTCTACCAGCAAGCTATGAAACTGGAA
GTGGAGTTCTTTTCTGCTAAGCTTGTAGACCAACCTGTTGTAGCTCCACTTTCAAGATAT
TGTGATCCAAAATATAAACTCTTGATCTTCTCTGATTTTGATTTGACATGCACTGTTGTT
GATTCGTCTGCCATTTTGGCGGAGATCGCAATTTTGTCATTCCAAAAGGCAAGTCAAAGT
GGGATTGATAATAACCTCGACCGTGCAAAATCGGGAGAACTGAGAAATTTGTGGAACATG
CTCTCTAAGCAATACATGGAAGAGTATGAGGAATGCATGGAAAGACTACTTCCTCCAGAA
GAATCAAAGTCACTAGATTATGATAAACTGTATAAAGGCCTGGAGGTGCTTGCTGAGTTT
GAGAAGGCTGCAAATTCTAGGGTTGTCGACTCTGGTGTCCTGAGGGGAATGAATTTAGAA
GACATCAGGAAAGCTGGGGAGCGGCTTATTCTTCAGGGTGGCTGTAAAAATTTCTTTCAG
AAGATTGTAAAAACAAGGGAGATCCTCAATTTGGATATCCATATTCTTTCCTACTGCTGG
TGTGCAGAGCTTATAAGATCCGCCTTCTCATCAGCCGGCTGTCTAGATGGTTTGAACATA
CATGCGAACGAGTTCGCCTTTGAGGAATCTGTTTCAACTGGTGAGATTGACAGAAAGATC
CAGTCCCCGCTAGACAAGGTTGAGAAGTTCAAGAGCATCAGAAGCGACGCGGACAGCACG
GTGCCATTCCTGTCTGTTTACATCGGAGACTCGGCCGGTGATTTGCTCTGCTTATTGGAG
GCAGATATCGGTATCGTCGTTGGGTCAAGCACAAGCTTGCGTAGAGTGGGCAGACAGTTC
GGTGTTTCCTTTGTCCCGTTGTTTCTCGGTCTAGTGGAGAAGCAGAGGCAACTGATGGAT
GAAGATGCGTCCGTGTTCAAGCCGCGGTCTGGAGTCCTTTATACGGTCTCTAGCTGGTCA
GAAATACACGCCTTCGTGCTGGGAAGCGATTTCAGCTGA

Peptide Sequence

PEP ID

Zm00001d031854_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:204238448:204241415:1 gene:Zm00001d031854 transcript:Zm00001d031854_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thiaminase2 description: thiaminase2
Sequence

MAQKNNALQIEELLDKLSVSLTGEELEIIGKLYQQAMKLEVEFFSAKLVDQPVVAPLSRY
CDPKYKLLIFSDFDLTCTVVDSSAILAEIAILSFQKASQSGIDNNLDRAKSGELRNLWNM
LSKQYMEEYEECMERLLPPEESKSLDYDKLYKGLEVLAEFEKAANSRVVDSGVLRGMNLE
DIRKAGERLILQGGCKNFFQKIVKTREILNLDIHILSYCWCAELIRSAFSSAGCLDGLNI
HANEFAFEESVSTGEIDRKIQSPLDKVEKFKSIRSDADSTVPFLSVYIGDSAGDLLCLLE
ADIGIVVGSSTSLRRVGRQFGVSFVPLFLGLVEKQRQLMDEDASVFKPRSGVLYTVSSWS
EIHAFVLGSDFS

Transcript Sequence

Transcript ID

Zm00001d031854_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:204238448:204241415:1 gene:Zm00001d031854 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:thiaminase2 description: thiaminase2
Sequence

ATGTTGCCTTTTACTTTGTTTTTTACATTTATGATATTGTTGTCATTTATCTTCATAATT
TCTCCTTCCATTTTTTGTAGAAAAACAGCTCTGCAGGAACACACATGAAAAAACAGGCGT
GGGAGGCACGCGTGATGGAAAAAAAACGGAGGTGGCACATGAAAATACAGGGTGTAAGGC
ATGTGTGATGGGGAAACCTGTAAAAAGAACAGGAGTATGGAGGTGAAAGGAAAAAAAAGT
AAAAATAGGAACACATGGAGGGAGAAAAATTAGGTGGAACATGGTCACAGAAAAATCTAG
AGGTAGTCCGGGAGAAAATCTGGAGGTATAATGTAAAAAAAGTCCAGGTCACATGTGGGA
TGTAAGGGCGCGAGGACACTTTAGGAAGGAAGAAAAGACGGTGCGAAGAATCATTTCACT
CATGATTTTAGTTCTAAATAGAGAGAACTTGAATTGAACACACACACACTTCTAATGTAT
CCTGATCATGTATTTTTATATGGAAGTATGTAACTATGTTGTATTCAGTTAATTAAGATA
CATTTTAAGGCCCTGCATCTACAATTAAAATGCTTATCAACTGACTTATTGTATAAGTTG
CTAGAGATATATCTATGGTCCTTAAAACTGAACTTCATCTTTCCTCCCTGATTCAATAAC
TGCTAACTAATTCTCTTCCCAACATAATTTTTATTATACTCAATCCGGTATCCTGTGGAT
TCAATTTGCAGGAGTGGGGAGTTGACCCTACCAAAGAGATACCTTCAAGTGCAGCTACAA
CCAAGTACACTGATTTCCTACTTGCAACTGCGGCTGGAAAAGTTGATGGCACAAAAGAAC
AATGCACTCCAAATAGAAGAATTGCTGGACAAACTGAGTGTATCATTAACTGGTGAGGAA
CTTGAGATTATTGGCAAGCTCTACCAGCAAGCTATGAAACTGGAAGTGGAGTTCTTTTCT
GCTAAGCTTGTAGACCAACCTGTTGTAGCTCCACTTTCAAGATATTGTGATCCAAAATAT
AAACTCTTGATCTTCTCTGATTTTGATTTGACATGCACTGTTGTTGATTCGTCTGCCATT
TTGGCGGAGATCGCAATTTTGTCATTCCAAAAGGCAAGTCAAAGTGGGATTGATAATAAC
CTCGACCGTGCAAAATCGGGAGAACTGAGAAATTTGTGGAACATGCTCTCTAAGCAATAC
ATGGAAGAGTATGAGGAATGCATGGAAAGACTACTTCCTCCAGAAGAATCAAAGTCACTA
GATTATGATAAACTGTATAAAGGCCTGGAGGTGCTTGCTGAGTTTGAGAAGGCTGCAAAT
TCTAGGGTTGTCGACTCTGGTGTCCTGAGGGGAATGAATTTAGAAGACATCAGGAAAGCT
GGGGAGCGGCTTATTCTTCAGGGTGGCTGTAAAAATTTCTTTCAGAAGATTGTAAAAACA
AGGGAGATCCTCAATTTGGATATCCATATTCTTTCCTACTGCTGGTGTGCAGAGCTTATA
AGATCCGCCTTCTCATCAGCCGGCTGTCTAGATGGTTTGAACATACATGCGAACGAGTTC
GCCTTTGAGGAATCTGTTTCAACTGGTGAGATTGACAGAAAGATCCAGTCCCCGCTAGAC
AAGGTTGAGAAGTTCAAGAGCATCAGAAGCGACGCGGACAGCACGGTGCCATTCCTGTCT
GTTTACATCGGAGACTCGGCCGGTGATTTGCTCTGCTTATTGGAGGCAGATATCGGTATC
GTCGTTGGGTCAAGCACAAGCTTGCGTAGAGTGGGCAGACAGTTCGGTGTTTCCTTTGTC
CCGTTGTTTCTCGGTCTAGTGGAGAAGCAGAGGCAACTGATGGATGAAGATGCGTCCGTG
TTCAAGCCGCGGTCTGGAGTCCTTTATACGGTCTCTAGCTGGTCAGAAATACACGCCTTC
GTGCTGGGAAGCGATTTCAGCTGATGGATCTGCTGCTTCTTTTCTCCATCTTTTTCCCCT
TGAGAAGCAAAAAAGCTTTTGCCGGTTGATTCTGATGCATACGATGCGTGAATCCTAATG
TGGTCATTTTATGAAAGCCACATGTCGATTCTGGCTACCACTATGTATGAATGAATACCT
GTAGTTTGTGGTGTGGAATGGGTTAAGTTTGTGCCCGTGAATTGTGATCAATGTATCATT
GATTCATCCTTGTTCCATTTGGGACTAATTTCTGGGTGTTGCTGGCAGCAACTACAGTAT
ACTGGATGAATGATGAAGTACAACTCGTTTTTATTTCAGATTCTCAGCAGGAAGCGTACT
AGTACTAGCCACTAGGGCGAAATGCATGCTACTAGATGTATGATGTGTCATATCGGAGTA
CAAATACTGATGAACTG