Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031851_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:1:204134408:204138547:-1 gene:Zm00001d031851 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone-lysine N-methyltransferase SUVR4
Sequence

ATGGGCAGCAACACGGAAAGGGCCAGGAAGGCGTTGGGCGCCATGAAGCTGATCGGTTTC
TCTAAGAAGCAGGCCATCCCAGTACTCAAGGAACTCCTCAAAATCTTCAACAACAACTGG
GAGCCCATTGAGGATGAGAGCTACCGTGCCCTCGCAGATGCCATCCTCGATAGGCAAGAC
AGCAAGCAAACCCCTCCCTCCCAACAGGGCACCCAAGCAGCCCATGCGGACTTGGAGCCT
CTTAGATCAACAAGGGACGATCGGCAACAATATCTTTCTGCTAGCCTTGATGACACATGT
GAAGATGATAATGAAACACCCCTGGTCAAGAGGCCCAGGATGGGCACCGCTAATTTCAGA
CCAGAGCTGCAGCCACCACAGCAATCCAGTGTTTCAACCCAAGGTGCTCTGCCTGCTTCA
CCACAAACGAGTCGTCGGCAAACTCGGTCCTTGACTGTAGAGCCACACGCTGCTGGCCAT
GAATATCCTTTAGCTGTCAACGATGCTCTAGTTGTGAAAGAACCCAAACCAGAACCACAA
ATTGATAGAGCAGAAGATTTTGTGGCTGGTCCTAATGCCACACAACTCAATGATGGATCT
TCAGAACAAACTTCGGGTTTTGGTGCAAGAGGCAACATAGTTCACCAAGCTCAAAGTCTT
GGCAGGAGCCTGCAAGCAGCCGCAGTGTGCAAGAATGGGGTAGGGTCTACAGTTCAAAAT
ACTCATGAGACTTCGATTGTGGAGGTGGACGTTGCTTCCTCAGCCAATGGTGAGGTGAAG
ATGTCATTGAAATGCAGCTTGGGTTCTTCAAATTTCAGCATTAGTATGGAGGAGGTTTTC
AAAATGGTGGAGGAGAAGTGCCTTCACTCATACAAGATGCTACCTTCAGATCTTTCTATT
GGCAAGCTGCTGAGTGAGGTATGCCAATCTGTTGTGCAGTTGGGCACTATGCATTCTGAG
GTTAATAGGGACAGTGGCAGCTTGCATAATGAAGTAGTTGTTCCATTTGTGAAGCCAATC
TCTTGTGAGGCTGCTGTGGGCATAAGTGATGATGTGGCTGGTGGGTCATCAGTCCTTGAA
TCCTCAGAACCTTGTTTGCAGAATTCACTTGTTGCTTGGAATCCTGAGTTGGCTCACTGT
AATCAAAAGACAACCCATGATACTACTGATATATCCAAAGGCGAAGAGCGGGTAAGAATA
CCTGTAGTAAATGAATTTGGCAGCGAGACCTGTCCTCCATCCTTTTATTACATACCAAGA
AATCTTGTCTTCCAAAACGCTTATGTTAACATCTCGATTTCTCGAATTTGTGATGAAGAT
TGTTGTGCTGATTGTTCTGGCAACTGTTTATCAGCGCCAGTTCCATGTTCTTGTGCAAGA
ATAACAGGGGGCGAGTTCTCCTATACACTTGAGGGCCTGCTTAAGACAGCATTCCTTGAT
GAATGTACCTCAGTGAATCATTTCCTACAAGAGCACCATAGGTTCTACTGTCCAGTTTGC
CCTCTTGAAAGATCTAAGAACGAAGGCTCACCTGGTCCATGTAAAGGTCATATTGTCAGA
AAATTCATTAAAGAATGCTGGAGTAAATGTGGATGTGGCATGCAGTGTGGAAACCGTGTG
ATTCAGCGTGGTATAACATGCAAATTACAGGTGTTCTTTACACGTGAGGGTAAAGGCTGG
GGAGTACGCACAGTGGAAGATCTCCCAAGAGGTGCCTTTGTCTGTGAATATGTTGGAGAG
ATACTAACAAGTGCTGAATTGCATGAAAGAGCAATTGAGAATGCAAGAAATGGTAAGCAT
ATGCATCAAGTGCTCCTGGACGCTGGTTGGGGTTCAGGTGTAGTATTGAGGGATGAGGAC
GCTTGTAGCCTTGATGGTTCATTTTATGGGAATGTCGGGCGGTTTATCAACCACCGATGC
TACAATGCAAATTTAGTTCAGATCCCTGTAGAAGTTGAGACGCCCGATCATCATTATCAC
CATCTGGCATTTTTCACGAACAAGAAAGTGGAGGCATTTGAAGAGTTAACTTGGGATTAT
GGCATCGATTTTGATGACATGGAAGGGCCCAGTAAACCGTTCAGATGCATGTGTGGAAGT
AGATACTGCCGCGATCCGAACAATCCAAGGAGGATGGGTAGAGCAGCTGCTAAGCGAAAG
TAG

Peptide Sequence

PEP ID

Zm00001d031851_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:1:204134408:204138547:-1 gene:Zm00001d031851 transcript:Zm00001d031851_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone-lysine N-methyltransferase SUVR4
Sequence

MGSNTERARKALGAMKLIGFSKKQAIPVLKELLKIFNNNWEPIEDESYRALADAILDRQD
SKQTPPSQQGTQAAHADLEPLRSTRDDRQQYLSASLDDTCEDDNETPLVKRPRMGTANFR
PELQPPQQSSVSTQGALPASPQTSRRQTRSLTVEPHAAGHEYPLAVNDALVVKEPKPEPQ
IDRAEDFVAGPNATQLNDGSSEQTSGFGARGNIVHQAQSLGRSLQAAAVCKNGVGSTVQN
THETSIVEVDVASSANGEVKMSLKCSLGSSNFSISMEEVFKMVEEKCLHSYKMLPSDLSI
GKLLSEVCQSVVQLGTMHSEVNRDSGSLHNEVVVPFVKPISCEAAVGISDDVAGGSSVLE
SSEPCLQNSLVAWNPELAHCNQKTTHDTTDISKGEERVRIPVVNEFGSETCPPSFYYIPR
NLVFQNAYVNISISRICDEDCCADCSGNCLSAPVPCSCARITGGEFSYTLEGLLKTAFLD
ECTSVNHFLQEHHRFYCPVCPLERSKNEGSPGPCKGHIVRKFIKECWSKCGCGMQCGNRV
IQRGITCKLQVFFTREGKGWGVRTVEDLPRGAFVCEYVGEILTSAELHERAIENARNGKH
MHQVLLDAGWGSGVVLRDEDACSLDGSFYGNVGRFINHRCYNANLVQIPVEVETPDHHYH
HLAFFTNKKVEAFEELTWDYGIDFDDMEGPSKPFRCMCGSRYCRDPNNPRRMGRAAAKRK

Transcript Sequence

Transcript ID

Zm00001d031851_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:204134408:204138547:-1 gene:Zm00001d031851 gene_biotype:protein_coding transcript_biotype:protein_coding description:Histone-lysine N-methyltransferase SUVR4
Sequence

CCTTCTCTTCCAGTCCTCCGTCAGAATTCACTCATCTCTCTTCCCGTGGTTCGAATGTGG
TTGACCCCCTGCCGATTGGCCTTGTTCTACCGCTTCAAGCCACCTTCCATTTCGTCTAGG
CACTTGTTTCCAATACTAGTTCTTGGTAGGGAGAAAAGACTAATCACTTTTTTAAGTGGG
ACAGGGAGCAACCGCCATCATCCCTGTTCGTCATCTCTCCCACCATCAACACCAACATGG
GCAGCAACACGGAAAGGGCCAGGAAGGCGTTGGGCGCCATGAAGCTGATCGGTTTCTCTA
AGAAGCAGGCCATCCCAGTACTCAAGGAACTCCTCAAAATCTTCAACAACAACTGGGAGC
CCATTGAGGATGAGAGCTACCGTGCCCTCGCAGATGCCATCCTCGATAGGCAAGACAGCA
AGCAAACCCCTCCCTCCCAACAGGGCACCCAAGCAGCCCATGCGGACTTGGAGCCTCTTA
GATCAACAAGGGACGATCGGCAACAATATCTTTCTGCTAGCCTTGATGACACATGTGAAG
ATGATAATGAAACACCCCTGGTCAAGAGGCCCAGGATGGGCACCGCTAATTTCAGACCAG
AGCTGCAGCCACCACAGCAATCCAGTGTTTCAACCCAAGGTGCTCTGCCTGCTTCACCAC
AAACGAGTCGTCGGCAAACTCGGTCCTTGACTGTAGAGCCACACGCTGCTGGCCATGAAT
ATCCTTTAGCTGTCAACGATGCTCTAGTTGTGAAAGAACCCAAACCAGAACCACAAATTG
ATAGAGCAGAAGATTTTGTGGCTGGTCCTAATGCCACACAACTCAATGATGGATCTTCAG
AACAAACTTCGGGTTTTGGTGCAAGAGGCAACATAGTTCACCAAGCTCAAAGTCTTGGCA
GGAGCCTGCAAGCAGCCGCAGTGTGCAAGAATGGGGTAGGGTCTACAGTTCAAAATACTC
ATGAGACTTCGATTGTGGAGGTGGACGTTGCTTCCTCAGCCAATGGTGAGGTGAAGATGT
CATTGAAATGCAGCTTGGGTTCTTCAAATTTCAGCATTAGTATGGAGGAGGTTTTCAAAA
TGGTGGAGGAGAAGTGCCTTCACTCATACAAGATGCTACCTTCAGATCTTTCTATTGGCA
AGCTGCTGAGTGAGGTATGCCAATCTGTTGTGCAGTTGGGCACTATGCATTCTGAGGTTA
ATAGGGACAGTGGCAGCTTGCATAATGAAGTAGTTGTTCCATTTGTGAAGCCAATCTCTT
GTGAGGCTGCTGTGGGCATAAGTGATGATGTGGCTGGTGGGTCATCAGTCCTTGAATCCT
CAGAACCTTGTTTGCAGAATTCACTTGTTGCTTGGAATCCTGAGTTGGCTCACTGTAATC
AAAAGACAACCCATGATACTACTGATATATCCAAAGGCGAAGAGCGGGTAAGAATACCTG
TAGTAAATGAATTTGGCAGCGAGACCTGTCCTCCATCCTTTTATTACATACCAAGAAATC
TTGTCTTCCAAAACGCTTATGTTAACATCTCGATTTCTCGAATTTGTGATGAAGATTGTT
GTGCTGATTGTTCTGGCAACTGTTTATCAGCGCCAGTTCCATGTTCTTGTGCAAGAATAA
CAGGGGGCGAGTTCTCCTATACACTTGAGGGCCTGCTTAAGACAGCATTCCTTGATGAAT
GTACCTCAGTGAATCATTTCCTACAAGAGCACCATAGGTTCTACTGTCCAGTTTGCCCTC
TTGAAAGATCTAAGAACGAAGGCTCACCTGGTCCATGTAAAGGTCATATTGTCAGAAAAT
TCATTAAAGAATGCTGGAGTAAATGTGGATGTGGCATGCAGTGTGGAAACCGTGTGATTC
AGCGTGGTATAACATGCAAATTACAGGTGTTCTTTACACGTGAGGGTAAAGGCTGGGGAG
TACGCACAGTGGAAGATCTCCCAAGAGGTGCCTTTGTCTGTGAATATGTTGGAGAGATAC
TAACAAGTGCTGAATTGCATGAAAGAGCAATTGAGAATGCAAGAAATGGTAAGCATATGC
ATCAAGTGCTCCTGGACGCTGGTTGGGGTTCAGGTGTAGTATTGAGGGATGAGGACGCTT
GTAGCCTTGATGGTTCATTTTATGGGAATGTCGGGCGGTTTATCAACCACCGATGCTACA
ATGCAAATTTAGTTCAGATCCCTGTAGAAGTTGAGACGCCCGATCATCATTATCACCATC
TGGCATTTTTCACGAACAAGAAAGTGGAGGCATTTGAAGAGTTAACTTGGGATTATGGCA
TCGATTTTGATGACATGGAAGGGCCCAGTAAACCGTTCAGATGCATGTGTGGAAGTAGAT
ACTGCCGCGATCCGAACAATCCAAGGAGGATGGGTAGAGCAGCTGCTAAGCGAAAGTAGG
CAGGGAGCGCGGACTTGGTTGGAGTTGAGCACACCAACTTTTGCTGTGGGGGGGTCTGGT
TTCGTGTTTGATGTGGAGTAATGCAGTACCATCACCTCAGCTAGTATTAAGTGTAGATAG
GTGTGGATGATTTTGGTGAATGGTGTTATGGACGGAAATGCTGCAGGCTGAGCGACCTAG
TAACCTATGCCATGTAGTGGCATCTAAATTAGCCTGGGATTGTGTATGCGTAAAAAGAAC
GCCTAAGACT