Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031799_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:202175993:202181535:-1 gene:Zm00001d031799 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-beta hydroxysteroid dehydrogenase/isomerase

Sequence

ATGGCCAGCGCTGTCTGCGGCGTCACCGCGCGCGCCCACCTGCCTTCCGCCGTCCCTGCA
GCCGCAAGAAAGCTCTTCTTCCGCTGCAGGGCCGCGTCCACCATGAACGAGGCATCGGCG
AGCTCGCCGGACGCCGAGGAGAAGAAGACGACGACTGTCTTCGTGGCCGGCTCGACGGGG
CGCACCGGCAAGCTCGTTGTGGAGAAGCTGCTGGCCAAGGGATTCGGCGTCGTCGCCGGT
ACGACGGACGTGAGCAGGGCCCGCGGCAGCCTGCCCCAGGACCCCAACCTTCAGCTCGTC
AGGGCTGACGTTACGGAGGGCGTCGACAAGCTGGTGGAGGCCGTGCGCGGCGTCGATGCT
GTCGTCTGCGCGACGGGATTCCGGCGGTCCTTTGACCCTTTTGCTCCGTGGAAGGTAGAC
AACTTTGGCACAGTGAACCTGGTTGAAGCATGCAGAAAGGCTGGCGTAGCAAGATTCGTA
CTCGTCAGCTCCATTTTAGTAAATGGGGCCGCCATGGGTCAACTTCTGAATCCAGCCTAC
ATTGTGCTCAATCTACTTGGCTTAACACTGGTCGCAAAGCTACAGGCAGAGAATCACATC
AGGAAATCAGGAATAGATTACACTATCGTAAGGCCTGGAGGGCTGACAGATCAACCCCCA
ACAGGGAATATAGTCATGGAACCTGAGGACACTCTTTATTCGGGATCCATATCTCGGAGC
CAGGTTGCTGAAGTAGCGGTTGAAGCACTGGTGTGTCCAGAGTCTTCCTACAAAGTTGTT
GAGATTATCGCCCGTACTGATGCTCCAAATCGCTCTCTGAAGGATATGTACGCTGCAATT
AAGCAAAATTGA

Peptide Sequence

PEP ID

Zm00001d031799_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:202175993:202181535:-1 gene:Zm00001d031799 transcript:Zm00001d031799_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-beta hydroxysteroid dehydrogenase/isomerase

Sequence

MASAVCGVTARAHLPSAVPAAARKLFFRCRAASTMNEASASSPDAEEKKTTTVFVAGSTG
RTGKLVVEKLLAKGFGVVAGTTDVSRARGSLPQDPNLQLVRADVTEGVDKLVEAVRGVDA
VVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVARFVLVSSILVNGAAMGQLLNPAY
IVLNLLGLTLVAKLQAENHIRKSGIDYTIVRPGGLTDQPPTGNIVMEPEDTLYSGSISRS
QVAEVAVEALVCPESSYKVVEIIARTDAPNRSLKDMYAAIKQN

Transcript Sequence

Transcript ID

Zm00001d031799_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:202175993:202181535:-1 gene:Zm00001d031799 gene_biotype:protein_coding transcript_biotype:protein_coding description:3-beta hydroxysteroid dehydrogenase/isomerase

Sequence

ACGTATCCAGAGCAAGGGCTGTCCTGCCCTTCTTCCCACGGTTCACGGCTGATTGAGTCG
GCCACTGCCCACGCCACCCAAAAACTCATGGCCAGCGCTGTCTGCGGCGTCACCGCGCGC
GCCCACCTGCCTTCCGCCGTCCCTGCAGCCGCAAGAAAGCTCTTCTTCCGCTGCAGGGCC
GCGTCCACCATGAACGAGGCATCGGCGAGCTCGCCGGACGCCGAGGAGAAGAAGACGACG
ACTGTCTTCGTGGCCGGCTCGACGGGGCGCACCGGCAAGCTCGTTGTGGAGAAGCTGCTG
GCCAAGGGATTCGGCGTCGTCGCCGGTACGACGGACGTGAGCAGGGCCCGCGGCAGCCTG
CCCCAGGACCCCAACCTTCAGCTCGTCAGGGCTGACGTTACGGAGGGCGTCGACAAGCTG
GTGGAGGCCGTGCGCGGCGTCGATGCTGTCGTCTGCGCGACGGGATTCCGGCGGTCCTTT
GACCCTTTTGCTCCGTGGAAGGTAGACAACTTTGGCACAGTGAACCTGGTTGAAGCATGC
AGAAAGGCTGGCGTAGCAAGATTCGTACTCGTCAGCTCCATTTTAGTAAATGGGGCCGCC
ATGGGTCAACTTCTGAATCCAGCCTACATTGTGCTCAATCTACTTGGCTTAACACTGGTC
GCAAAGCTACAGGCAGAGAATCACATCAGGAAATCAGGAATAGATTACACTATCGTAAGG
CCTGGAGGGCTGACAGATCAACCCCCAACAGGGAATATAGTCATGGAACCTGAGGACACT
CTTTATTCGGGATCCATATCTCGGAGCCAGGTTGCTGAAGTAGCGGTTGAAGCACTGGTG
TGTCCAGAGTCTTCCTACAAAGTTGTTGAGATTATCGCCCGTACTGATGCTCCAAATCGC
TCTCTGAAGGATATGTACGCTGCAATTAAGCAAAATTGACTGCTCTATTTTTTTGACAGG
ATGGTTAGTTTGTTATACAACCATGAATCAATGAAGAACACTTATAGTCTATGTATTTGG
CATTCGACAGTATATTTTTGACTCGCGAAAATCTCCTGAAGCCTTCAGTCTAGGCCGGCT
AGTTCACCTCTAAAACCGGTCAGACCGGGTGTCCAACATCAGCTAGACTGGCCAAAAGTT
AAGTGCTCGTTCCCGTGAAACCTGGCTAGCCGATTTTTTCAGATTTTGAACCGGTTTATT
CGAAATCGATTTGTGGATCTATCTTGACGTGAAAAAAATTAGAGAATGCATTTTGAATTG
TTAAGAACGCATCTACTACATCCTTCTACCCTCACTTATCTATCCACCTTGTTGTTTGTC
ATGTCATCTTGCAAGATTTAACGGTGTTCTAAGTGGTCTTGTCGATCCAAGGAAAACCTC
TAAATACTTGTTCTCGATGAGATGAGTCTTCACAGGAGGTACTCAGGAGTCTACCAAGCA
AAGAAAAGGACCAACATTAGTCTAACTAACCCCTTTATCGACAACGGGATCAACATTGGT
CTAACCAACCCCTTGATTGGTTTTGTTAGTCTGCTATGTTCTTGTTGTGATCAAGATTAT
TTGTAACCATGGGTGTTCTAACTTTTGCTGGTGTGTGATCCAAATCAGCATCAACAGACT
TTTCTATGACTACGGGGGAAAGAAGAGCAAGATCTAATCTGCTAGCAACAAGTCAGGTTT
TGAGAACACTAAGGGGAAGGAGGATCACATCGACCCTTCAATCCAAAGAACACCAACCAT
CCTACATTGATAGAAGTTCTTGATGATCTTCATCAGAAGATTGAAGCCAAGTCTACTGCC
AATCTAAAGGCTTTCTTAAAGAGTTAATGATTAGTGAGACAAGGTTACTCAATTCGTGAG
CCTAACTTCAATAATTCTATTGTTTCTACATCTGCTATACCAGAGGTAAAGATTGATGAA
AAGGTAATTGATCCTTACCCAACTCATACTGATTATGCTAAGATGTTGTATGATAAAAAA
AAACTATTATTGATAACAATCTTATGACCGATCTTAATATGCTTATGGCACACTTTAATA
GACTAGAGGGTAAGACAACCGATTATGTCGATCTATCAGCTGAAGAATCTGGTTCTACAA
AACCTCAATATGGTCTGCCTTTTAGTTTTATGATAATAAAGGTTTAATGTAGCAGATAAC
AAAGCTAAATTGGCTTCTTCACCACTTGAGACGACAAATCCAACTTAAGTGGTGTTAGTA
CATCTTTGCCAATAGTCATCGTTGTTCAAAATTCGAGTCATAACATACAAAGTAATCATA
GATCAACAGTAAACCAAGCTCTGGTGGGGTATATATATGGTTCTTTCTAACCCGCCGAAG
TCACCAAGTCAAATTTCTATGCTTAGTAATACACCTATGGCTCCTATTACACATTTTAAG
GAGATTTTGAACTTCGTGCTTATAGCGTCTCCTTGGAAGAGCCTCCAAAGGTATAATAGC
CCAAAGTTTATTTGTGTTACTTCCCCCTAATTATTAAATCAGGCTAACACGTGTATAAAA
CTATTTTACTATCTTAAACTGTGTCATCCACATTTCCATTTAGGGCATGTTTGGAAGCAC
TCGGTTTTTAAGGAACTGGTTTATAGAAACCAGGGTACATCCAAATAGGCCCGTTTATGC
TTCAGTTTCTAGAAACTGGATTTCCATATTCTAAGAAACTAAGAAGTTGTCCTTTCCTAG
CTAAAATCAGGTTTTGTCCGACAAATTACGTACACCCTTAGTTGTTTGATGGAAATTATG
GTGATTGCTACCACTCTGAAGCCTATGTCTACAACCCCCTCAATGTATGCTATTTGAATG
TTTAATTATTATTTTAACAATTCTGAATTAAAAAATTATGAGTTCAATCTAAGTTTAAAA
TTGGCAGCAAAGAAAAATAAAGGGAATAATTAAATCATTTACTTTTAAAATAGAGTAAGG
TAGACTTGTCTTTGTGTACCGAAAAAGTTAGAAATTGGGTTTCAAACATGCACACCCAAT
TTTGTTTCGATAAACAAGTTTATAGAAACTAGGGATAGAAATCAGTTTCTTAGAAAGTGT
GGTGCTTCCAAATAGTCCATTAGTTGATTATTAATTGTATTTGGTTCATGTATACCTTCA
GTATTTTTGTACTCGCATCCATGTATTTTATTATGAAATCCATGTATATGTGATTCGAAT
GAATCTATACAACACTTGTTTTTTAAATGTCATTACGCTAGATTCTTTTGGAGGCTTTTA
TATTGTTGTTTTGGTCTAAGTACCCCGAGATCATTTAAACATATTTTTGGATCTTGATTG
CACGGGGTGCACCTCAAAGTTAAAAATCTGATTATTACAGGTGTTGCAACTTTATATTAG
GCTATCTGGATAAGTCGGAATGACTTAGTGTTTAACAAAACCCCGATGGTTACTTATTTG
CAGGTTCTGTTTCGGGCGACCCATTGGCTTAGGTTTTGGGCATATTTGCAGAGGGTTGAA
GACCAGGAGATAATCAAGGAGACGTGTCGACGGATTGAAGTCGCATCTATGCAATTTTTT
TCTTATTTTGGTTGGAGTTTTACGAACATGATTACATATTGAGGTTATAGTATGTCTGTT
GGGTGTCGTGTTTATTTTAATGTTTGTGGTGTAAGATTGCACTCTATGTTGGGAGTGTTG
ATCTTTTAATGTTAGTTTG