Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031782_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:201730231:201732456:1 gene:Zm00001d031782 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGCCCGCGCCCGCGCCCAAGGCGCTGCCCCGTCTCCTCGCCGCCATATCCACCGCCGCC
TCCTCGGCCACTGACCTCCGTCGTCTCTCCCTCCTCCTCCTCTCCCCCTCCGCTCCTGTG
CCCCCCATCCGGTGCCTCAACACCCTCCTCATGGCGCTCGCCCGCCACGGCATGCTCTCG
GACATGGAGTCGCTCGCCGCCCGCATGCCTGTCCGCAACCTCCACACCTACACCACCCTC
ATCAACGCCTATTGCCACGCTGGCGACCTCCCCGCTGCCAAGCGCCATCTGTCCTCGCTC
CTGCGCGCCGGCCTCGCACCGGACTCCCACGCGTACACGTCCTTCGTCCTCGGGTACTGC
CGCACGGGGCTGTTCGCGCACGCCTGCCGATTGTTCTTGCTAATGCCGCAGCGGGGGTGC
GCGCGCACCCCGTTCACGTACGCAGCCCTGCTCCAGGGGCTATGTGGCGCTGGGATGGTG
CGCGAGGCGATGGCGGTTTTCGCTGGGATGTGGCCTGATGGCTGTGCCCCTGATTCGCAC
GTCTACAGCATAATGGTGCACGGGTTATGTGGGGCAGGACGAGCTGGAGAGGCGGTTGCG
CTGCTCACAGACGCAATGGGGAAGGGATTTGTGCCGAATGTTGCTGTATACAATGCTTTG
ATCGATGGCTACTGCAGTACTGGGGACTTGGAGCTCGCAATTGACATCTTCAAGGGGATG
CAGAGTAAAGGGTGCTTGCCGAACGTCCGCACATATACTCAGCTGATATGTGGGTTTTGC
AAGTCGGGGAAAGTAGAGAGGGCCATGGTACTATACAGTCGGATGATTGAGGCAGGTTTA
GCTCCAAATGTGGTGACATACACAACCTTAATCCAGGGACAGTGCAGCGAGGGGCACTTG
GAACATGCTTTTAGGCTGCTTCATTCAATGGAGGCTTGTGGGCTGGCCCCTAATGAGTGG
ACTTGCTTAGTGCTGATTGATGCTTTGTGCAAACATGGGAGAATTGAGGAAGCTCAGCAG
TTTCTCGGGTCTCTTGTTCAGAAGGGAATTAAGGTGAATCAGGTTATCTACACCAGTATG
ATAGATGCATTGTGCAAGTCGGGAAAGTTTGATGGTGCTCATAATCTGATGCAGAAAATA
ATCACAGAAGGGTTTGTGCCAGACGCCCACATGTACAGTTCGCTTATTGATGGACTATGC
AGGGAAAACAAGCTGTTGGAAGCAATATCACTATTGAATGATATGATTGAGAGTGGAGTA
CAGGCCAATGCTGTTCCATTTACCATTCTAATTGATAAACATCTCAGGGAGTTTAGATCT
GATTCCCCAAAAATGATATCCGATAGGATGGCTGCGGCAGGTGTTAAGCCTGATGTCGTC
ACTTATACAGTTTTTATACGCTCCTACTGTCAAGATGGAAGGATGGAAGATGCCGAATCC
ATGATGATTCAGATGATCGATCATGGTGTTCGTCCAAATTTAACCACATATAACACATTG
ATTAAAGGATATGCAAATCTTGGACTAGTTAGTCAAGCATTTTCATCTCTTAAGAACATG
ATTGATAATGGATGCAAGCCAAATGACGAGTCTTACACAGTTCTCCTTGGACTTCTACTA
AAGAAAAATTCCTACCATGACTTAGTTGCTGATTCTATTAGTTTATGGAAAATAGTTGAC
ATGAAAGTTCTCGAGGAACTTTTGGAGGAAGTGATTAAGCTTCAGTGCAGCTCAGCCAGC
TATGTTTACGATTGTTTTATTAGATGTTTGAGCAAAGTCGACAGATTGGAGGAAGCAAAA
AGTTTTCTCGTAGGGATGCAGAGTGCTAACTTAACCCCAAGTGAGGATGTATATACTTGT
ATGATAGAATGTTGCTACAGAATGAAATTGCTAAAAGAAGCTTTAAGGTTTCTTGATTCA
ATGGTGAAAAGAAACTATTTACCACGTTTAGAATCTTATAGGTTTATTATTTGTGCTCTT
TGTGAGGAAGGAAGCTTTCATACTGCTAAAAGCATTTTTGGTGACATACTATCAAAGGAA
TACAACCGTGATGAGATTGCTTGGAAGATTTTGATTGATGGCTTATTACAAAAAGGAAAC
ACTGCTGACTGCTCCCGTCTGCTATCATTCATGGAGGAACAGAATTGCCGTCCTGGTTCT
GCAATATATTCTAGGCTTACAGGCGAAATAACAGTTACAAGTGAAGCTCAGGAAATTGCT
ACATGA

Peptide Sequence

PEP ID

Zm00001d031782_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:201730231:201732456:1 gene:Zm00001d031782 transcript:Zm00001d031782_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MPAPAPKALPRLLAAISTAASSATDLRRLSLLLLSPSAPVPPIRCLNTLLMALARHGMLS
DMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYC
RTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSH
VYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGM
QSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHL
EHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSM
IDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGV
QANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAES
MMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLL
KKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAK
SFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICAL
CEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQNCRPGS
AIYSRLTGEITVTSEAQEIAT

Transcript Sequence

Transcript ID

Zm00001d031782_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:201730231:201732456:1 gene:Zm00001d031782 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGCCCGCGCCCGCGCCCAAGGCGCTGCCCCGTCTCCTCGCCGCCATATCCACCGCCGCC
TCCTCGGCCACTGACCTCCGTCGTCTCTCCCTCCTCCTCCTCTCCCCCTCCGCTCCTGTG
CCCCCCATCCGGTGCCTCAACACCCTCCTCATGGCGCTCGCCCGCCACGGCATGCTCTCG
GACATGGAGTCGCTCGCCGCCCGCATGCCTGTCCGCAACCTCCACACCTACACCACCCTC
ATCAACGCCTATTGCCACGCTGGCGACCTCCCCGCTGCCAAGCGCCATCTGTCCTCGCTC
CTGCGCGCCGGCCTCGCACCGGACTCCCACGCGTACACGTCCTTCGTCCTCGGGTACTGC
CGCACGGGGCTGTTCGCGCACGCCTGCCGATTGTTCTTGCTAATGCCGCAGCGGGGGTGC
GCGCGCACCCCGTTCACGTACGCAGCCCTGCTCCAGGGGCTATGTGGCGCTGGGATGGTG
CGCGAGGCGATGGCGGTTTTCGCTGGGATGTGGCCTGATGGCTGTGCCCCTGATTCGCAC
GTCTACAGCATAATGGTGCACGGGTTATGTGGGGCAGGACGAGCTGGAGAGGCGGTTGCG
CTGCTCACAGACGCAATGGGGAAGGGATTTGTGCCGAATGTTGCTGTATACAATGCTTTG
ATCGATGGCTACTGCAGTACTGGGGACTTGGAGCTCGCAATTGACATCTTCAAGGGGATG
CAGAGTAAAGGGTGCTTGCCGAACGTCCGCACATATACTCAGCTGATATGTGGGTTTTGC
AAGTCGGGGAAAGTAGAGAGGGCCATGGTACTATACAGTCGGATGATTGAGGCAGGTTTA
GCTCCAAATGTGGTGACATACACAACCTTAATCCAGGGACAGTGCAGCGAGGGGCACTTG
GAACATGCTTTTAGGCTGCTTCATTCAATGGAGGCTTGTGGGCTGGCCCCTAATGAGTGG
ACTTGCTTAGTGCTGATTGATGCTTTGTGCAAACATGGGAGAATTGAGGAAGCTCAGCAG
TTTCTCGGGTCTCTTGTTCAGAAGGGAATTAAGGTGAATCAGGTTATCTACACCAGTATG
ATAGATGCATTGTGCAAGTCGGGAAAGTTTGATGGTGCTCATAATCTGATGCAGAAAATA
ATCACAGAAGGGTTTGTGCCAGACGCCCACATGTACAGTTCGCTTATTGATGGACTATGC
AGGGAAAACAAGCTGTTGGAAGCAATATCACTATTGAATGATATGATTGAGAGTGGAGTA
CAGGCCAATGCTGTTCCATTTACCATTCTAATTGATAAACATCTCAGGGAGTTTAGATCT
GATTCCCCAAAAATGATATCCGATAGGATGGCTGCGGCAGGTGTTAAGCCTGATGTCGTC
ACTTATACAGTTTTTATACGCTCCTACTGTCAAGATGGAAGGATGGAAGATGCCGAATCC
ATGATGATTCAGATGATCGATCATGGTGTTCGTCCAAATTTAACCACATATAACACATTG
ATTAAAGGATATGCAAATCTTGGACTAGTTAGTCAAGCATTTTCATCTCTTAAGAACATG
ATTGATAATGGATGCAAGCCAAATGACGAGTCTTACACAGTTCTCCTTGGACTTCTACTA
AAGAAAAATTCCTACCATGACTTAGTTGCTGATTCTATTAGTTTATGGAAAATAGTTGAC
ATGAAAGTTCTCGAGGAACTTTTGGAGGAAGTGATTAAGCTTCAGTGCAGCTCAGCCAGC
TATGTTTACGATTGTTTTATTAGATGTTTGAGCAAAGTCGACAGATTGGAGGAAGCAAAA
AGTTTTCTCGTAGGGATGCAGAGTGCTAACTTAACCCCAAGTGAGGATGTATATACTTGT
ATGATAGAATGTTGCTACAGAATGAAATTGCTAAAAGAAGCTTTAAGGTTTCTTGATTCA
ATGGTGAAAAGAAACTATTTACCACGTTTAGAATCTTATAGGTTTATTATTTGTGCTCTT
TGTGAGGAAGGAAGCTTTCATACTGCTAAAAGCATTTTTGGTGACATACTATCAAAGGAA
TACAACCGTGATGAGATTGCTTGGAAGATTTTGATTGATGGCTTATTACAAAAAGGAAAC
ACTGCTGACTGCTCCCGTCTGCTATCATTCATGGAGGAACAGAATTGCCGTCCTGGTTCT
GCAATATATTCTAGGCTTACAGGCGAAATAACAGTTACAAGTGAAGCTCAGGAAATTGCT
ACATGA