Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031720_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:199415229:199417577:-1 gene:Zm00001d031720 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTCAGCCAACCAGACCACATCCCCAAGCCTCCCCTTGCTCGAGCTCCCTCCTACCCTC
TCCTCGCCGGCCGAGAATCCCCACCTCTGCGCCGATCATCTACCAACGCGGCGCCGGCGC
CGGCGCCACCGACGCCGACGCCGACGCCGACGCACGGAGATTCAAATGTCCGCTGCCGCA
TCCTCCTTGCTGCGCCCGGCGCCGAAGTGGGGCGGCGCGCCGTCGCACCGCCGGCTCGTG
GAGGAGCACCTGGCCTCGCTCCCGCACGGCCTCCCACGCCTCCGCCACGTGCAGGAGCTC
CACGCGCAGCTCCTCAAGCAGGGGCTCCACCGGGACCCGCATACCGCGTCCAAGCTCATC
GCTTCCTACGCGCTCCTCCGCCGGGTCCCCGCCTGCCGCTGCGTCTTCTCTGCCGCCGTG
GCGCTCCCGAACAGCCCGTTCCCCTCCAGCACTACCTTGCTCACCAAGACACTCCTCCGC
GCCTACGCGCTCAACTCCCTTCCCCACGCCGCGCTCGCCGTGTTCTTGGACGTGCCGTTG
CGCCAGCGGGGCACATTCACCTACTCCTTCCTCATCAAGGCGCTCGCCGCTGCGGGCCTC
ACGCCAGTCCGCGGGGCGCATGCGCACGTCGTCAAGCTCGGGTCCGCCGAGGACACCTTC
GTTGGAAATGCGCTGATCGACGCCTACTCCAAGAACCAGGGGCTATCTGACGCGAAGAAG
GTGTTCGACGAAATGACGACACGAGACGTTGTGTCCTGGAACACGGCCATGGCCGCAATG
GTGCGGCAAGGGGAGGTGGACGCAGCAAGGAGCATGTTTGACGAGATGCCCGAGAAGGAC
ACGGTGAGCTGGAACACAATGCTGGATGGCTATGCCAAAGCTGGGGAGGCAGAGAAGGCC
TTCGAGCTGTTCCAGCGCATGCCGGGGAGGAATGTGGTGTCCTGGTCGACTGTGGTGTCA
GCCTACTGTAAGAAGGGTGACATGGAGATGGCGCGGGTTATATTTGATAAGATGCCGGCC
AAGAACTTGGTGACATGGACCATAATGGTCTCAGCATGCGCTCAGAAGGGGCTTGTGGAG
GAAGCAGGCAGGTTGTTTACTGAGATGATGGATGCTGCCATTGAGCTTGATGTAATTGCA
GTTGTGAGTATACTGGCTGCATGTGCTGAATCTGGCTCCCTTGCCCTTGGTAAGAGGATT
CACCGGCATGTGCGCCAGAGGAAGCTGAGTAGATCAACCCTGGTATGCAATGCCCTGATG
GACATGTTCTGCAAGTGTGGATGTGTTAACCGAGCCGACTACATATTTGACACTGAGATT
GTTGAAAAGGATTTAGTGTCATGGAACATTATAATTGGAGGGTTTGCAATGCATGGCCCA
GGTGAAAAGGCGCTGGAACTCTTCGCACAAATGAAGCAGCAAGGCTTTCACCCCGATGCT
GTGACACTCATCAATGTTCTCAGCGCTTGCACGCACATGGGGCTTGTGGAAGAAGGACGG
AGGTTCTTTGCCAACATGGAGACAGACTATGGCATTAAGCCTCAGATAGAGCATTATGGT
TGTATGGTCGATCTTCTTGGCCGTGGAGGGCTCATTAAGGAGGCTGTTGACATGATCAAA
AGGATGCCCTGGGAGCCTAATGAGGTCATATGGGGGTCCTTGCTCAGTGCATGCCGACTG
CACAAGAATGTGGAGTATGCAGAACTGGCAGTGAACGAGCTGAGCAATTTGCAGCCCTCA
AGTGCAGGGAACTACGCTGTCTTGTCGAACATCTATGCAGAGGCTGGGAAGTGGAGCGAT
ATGGCGAAGGCAAGGGTGCAGATGAAAGGAACAGGGTCTCAGAAAACAGCTGGTTCAAGC
TGGATAGAACTTAATGAGGCGTTCCACGAATTCACAGTTGGGGACAGAAAGCACCCAGAG
TCTGACCAGATATCTGATATGATAGATAGGCTGAGTTCGCATGTTAAGTTTAATTTCAGC
TATATACTTAAGTAA

Peptide Sequence

PEP ID

Zm00001d031720_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:199415229:199417577:-1 gene:Zm00001d031720 transcript:Zm00001d031720_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MSANQTTSPSLPLLELPPTLSSPAENPHLCADHLPTRRRRRRHRRRRRRRRTEIQMSAAA
SSLLRPAPKWGGAPSHRRLVEEHLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLI
ASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPL
RQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKK
VFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKA
FELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVE
EAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALM
DMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDA
VTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIK
RMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSD
MAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFNFS
YILK

Transcript Sequence

Transcript ID

Zm00001d031720_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:199415229:199417577:-1 gene:Zm00001d031720 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGTCAGCCAACCAGACCACATCCCCAAGCCTCCCCTTGCTCGAGCTCCCTCCTACCCTC
TCCTCGCCGGCCGAGAATCCCCACCTCTGCGCCGATCATCTACCAACGCGGCGCCGGCGC
CGGCGCCACCGACGCCGACGCCGACGCCGACGCACGGAGATTCAAATGTCCGCTGCCGCA
TCCTCCTTGCTGCGCCCGGCGCCGAAGTGGGGCGGCGCGCCGTCGCACCGCCGGCTCGTG
GAGGAGCACCTGGCCTCGCTCCCGCACGGCCTCCCACGCCTCCGCCACGTGCAGGAGCTC
CACGCGCAGCTCCTCAAGCAGGGGCTCCACCGGGACCCGCATACCGCGTCCAAGCTCATC
GCTTCCTACGCGCTCCTCCGCCGGGTCCCCGCCTGCCGCTGCGTCTTCTCTGCCGCCGTG
GCGCTCCCGAACAGCCCGTTCCCCTCCAGCACTACCTTGCTCACCAAGACACTCCTCCGC
GCCTACGCGCTCAACTCCCTTCCCCACGCCGCGCTCGCCGTGTTCTTGGACGTGCCGTTG
CGCCAGCGGGGCACATTCACCTACTCCTTCCTCATCAAGGCGCTCGCCGCTGCGGGCCTC
ACGCCAGTCCGCGGGGCGCATGCGCACGTCGTCAAGCTCGGGTCCGCCGAGGACACCTTC
GTTGGAAATGCGCTGATCGACGCCTACTCCAAGAACCAGGGGCTATCTGACGCGAAGAAG
GTGTTCGACGAAATGACGACACGAGACGTTGTGTCCTGGAACACGGCCATGGCCGCAATG
GTGCGGCAAGGGGAGGTGGACGCAGCAAGGAGCATGTTTGACGAGATGCCCGAGAAGGAC
ACGGTGAGCTGGAACACAATGCTGGATGGCTATGCCAAAGCTGGGGAGGCAGAGAAGGCC
TTCGAGCTGTTCCAGCGCATGCCGGGGAGGAATGTGGTGTCCTGGTCGACTGTGGTGTCA
GCCTACTGTAAGAAGGGTGACATGGAGATGGCGCGGGTTATATTTGATAAGATGCCGGCC
AAGAACTTGGTGACATGGACCATAATGGTCTCAGCATGCGCTCAGAAGGGGCTTGTGGAG
GAAGCAGGCAGGTTGTTTACTGAGATGATGGATGCTGCCATTGAGCTTGATGTAATTGCA
GTTGTGAGTATACTGGCTGCATGTGCTGAATCTGGCTCCCTTGCCCTTGGTAAGAGGATT
CACCGGCATGTGCGCCAGAGGAAGCTGAGTAGATCAACCCTGGTATGCAATGCCCTGATG
GACATGTTCTGCAAGTGTGGATGTGTTAACCGAGCCGACTACATATTTGACACTGAGATT
GTTGAAAAGGATTTAGTGTCATGGAACATTATAATTGGAGGGTTTGCAATGCATGGCCCA
GGTGAAAAGGCGCTGGAACTCTTCGCACAAATGAAGCAGCAAGGCTTTCACCCCGATGCT
GTGACACTCATCAATGTTCTCAGCGCTTGCACGCACATGGGGCTTGTGGAAGAAGGACGG
AGGTTCTTTGCCAACATGGAGACAGACTATGGCATTAAGCCTCAGATAGAGCATTATGGT
TGTATGGTCGATCTTCTTGGCCGTGGAGGGCTCATTAAGGAGGCTGTTGACATGATCAAA
AGGATGCCCTGGGAGCCTAATGAGGTCATATGGGGGTCCTTGCTCAGTGCATGCCGACTG
CACAAGAATGTGGAGTATGCAGAACTGGCAGTGAACGAGCTGAGCAATTTGCAGCCCTCA
AGTGCAGGGAACTACGCTGTCTTGTCGAACATCTATGCAGAGGCTGGGAAGTGGAGCGAT
ATGGCGAAGGCAAGGGTGCAGATGAAAGGAACAGGGTCTCAGAAAACAGCTGGTTCAAGC
TGGATAGAACTTAATGAGGCGTTCCACGAATTCACAGTTGGGGACAGAAAGCACCCAGAG
TCTGACCAGATATCTGATATGATAGATAGGCTGAGTTCGCATGTTAAGTTTAATTTCAGC
TATATACTTAAGTAA