Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031660_T019
CDS Infomation

cds chromosome:B73_RefGen_v4:1:197842127:197848290:1 gene:Zm00001d031660 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCGGCAAGGAGGGTTGTGGGCTTTGATTCTGGTTGTATTGGAGGTTCTGATGGGGCA
GAAACGGATATGGTCGATTCATCTTTGGTCGACAGAAATTCTCATTTGCCATTTGATCAG
CATGAACTTCAAGCAAGGAAAAGACTGTTCTCTCCATTGAAAAATGTGCTCGTTAAACAG
TTCAATGGTGATATGCTCAACCTTCCTTCTGGTGATTCTAGATTTAGGCATTCTGATTCA
GCCGATAAACTATACAGTACTGGTTTCCAAGATAATAAAAAAGCCAACACGGGATGCATC
AATTTTTTTGAAACGCGGGATACTCCAGCCTCTAGGTGCTCCAGCCGGAGCCCAGAATGG
GATGTTACTAGGAGCAATTCTAATTCATTCACTGATGGTCCTTTACTTGGGAGCAAGGAT
TATATATCCTATTATGATCATCTAGCAGCTAGTGCAAAATTAGCGCACTCTCCGCTTTCT
CTGTCTCCTCTCAGCCCTAAATATATGAACAAAATTAAAGTGACAGGATCTCAAAGATAT
ATAATGAAAGATCTTGAGGATGACTTCCTAGATTTAAAGGAAACTGGAGGTTCTGGCGGA
GCTAGGATGCCGGAGGTATCAAAAGGATCTAACTTGTTACATGATGAACTTGATGTTATG
ACACCTAAATGGGGTTCATTGAGAAGATATCAAAATTGGGGCCCTGAATCTTCCCCTACA
TCTCCCAGAATTGGTTATGGTCGGAGTTTGTCTTTGCATGTAAGGAGGTCACTTGTTGGC
TCCTTTGAGGAGTCTCTTTTATCTGGTCGATACTCGTATGGAAAAGACAGTCAGACAATT
GATGGTTTCTTAGCTGTTCTAAATGTCACTGGTGGTAGTTTCTTCCCCACAACTCAGAAA
CTTCCATTCTCAGTAACAAGCATCGATGAGGATAGCTCCTTACTATACTATTCTTCTATT
GATCTTGCTGGGAGGTTGCCTTCGAATAACACCAAAAGCCCAAAGCTCCAAAGAAGCTAC
AGTAATAATGATTCGCGGTCAGCAAAGAGTCGTTTACGCATCCCTGTTAAGGGTCGCATA
CAGCTGGTGGTAAGCAACCCAGAGAAGACTCCACTTCATACTTTCTTCTGCAACTATGAC
TTGAGTGACATGCCTCCTGGAACCAAGACTTTCGTGCGGCAAAAGGTCACTCTCTCCCCC
TCTGCCTTGCCTTCTAATCCAGTGGAAGAAGGAAGCAAGACTTGTGATGTTAATTCTGGT
CACAAATCTTCTCAGTCAGTTTCATGTGGAAATGAACCTAGCGAACGGGGAGCTCGTTCT
GAATGCTGCAACGGTGGACAGAACTGCAACTCAAATGATGAATCAGAAAAAGGAGATCTG
AAAACAAGATGTCGATCATTGGATAGTGATTCTAATGAATCAAATAAGTCTAGTTCTCCA
GGAAATAAGAAAGACCAGTCTGATTCTGATGGTTGCTGCTGTCAAATGGATAAGTTTGGC
ATGGGAGAAAAGAAATCATGCTGCTCACCTTCTAAGATCAATGATAGTTCAGGTGGAGCT
GTGCTTCGTTATGCTTTGCACCTGCGATTTCTGTGCCCCTCCAAGAAAAAATCCTCGAAA
TCAATGCTTCGTTGCAAATCTGATCTATCAACGGCACCATATAGCAGCAATACGCTACCT
GAGGAAGAACGGAGGTTCTATCTCTACAATGATCTTAGAGTTGTATTTCCTCAAAGGCAC
TCAGATGCAGATGAAGGCGAGGTACACAAAATTTAA

Peptide Sequence

PEP ID

Zm00001d031660_P019
PEP Infomation

pep chromosome:B73_RefGen_v4:1:197842127:197848290:1 gene:Zm00001d031660 transcript:Zm00001d031660_T019 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPARRVVGFDSGCIGGSDGAETDMVDSSLVDRNSHLPFDQHELQARKRLFSPLKNVLVKQ
FNGDMLNLPSGDSRFRHSDSADKLYSTGFQDNKKANTGCINFFETRDTPASRCSSRSPEW
DVTRSNSNSFTDGPLLGSKDYISYYDHLAASAKLAHSPLSLSPLSPKYMNKIKVTGSQRY
IMKDLEDDFLDLKETGGSGGARMPEVSKGSNLLHDELDVMTPKWGSLRRYQNWGPESSPT
SPRIGYGRSLSLHVRRSLVGSFEESLLSGRYSYGKDSQTIDGFLAVLNVTGGSFFPTTQK
LPFSVTSIDEDSSLLYYSSIDLAGRLPSNNTKSPKLQRSYSNNDSRSAKSRLRIPVKGRI
QLVVSNPEKTPLHTFFCNYDLSDMPPGTKTFVRQKVTLSPSALPSNPVEEGSKTCDVNSG
HKSSQSVSCGNEPSERGARSECCNGGQNCNSNDESEKGDLKTRCRSLDSDSNESNKSSSP
GNKKDQSDSDGCCCQMDKFGMGEKKSCCSPSKINDSSGGAVLRYALHLRFLCPSKKKSSK
SMLRCKSDLSTAPYSSNTLPEEERRFYLYNDLRVVFPQRHSDADEGEVHKI

Transcript Sequence

Transcript ID

Zm00001d031660_T019
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:197842127:197848290:1 gene:Zm00001d031660 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GGCGAACCCGCAGACCTCCATGGACTAAACATTGATTCAAGAAATACAAATTCTTGGTCT
TCTCCTAAATTAGTGCCTTCTGTCCATATGCCGGCAAGGAGGGTTGTGGGCTTTGATTCT
GGTTGTATTGGAGGTTCTGATGGGGCAGAAACGGATATGGTCGATTCATCTTTGGTCGAC
AGAAATTCTCATTTGCCATTTGATCAGCATGAACTTCAAGCAAGGAAAAGACTGTTCTCT
CCATTGAAAAATGTGCTCGTTAAACAGTTCAATGGTGATATGCTCAACCTTCCTTCTGGT
GATTCTAGATTTAGGCATTCTGATTCAGCCGATAAACTATACAGTACTGGTTTCCAAGAT
AATAAAAAAGCCAACACGGGATGCATCAATTTTTTTGAAACGCGGGATACTCCAGCCTCT
AGGTGCTCCAGCCGGAGCCCAGAATGGGATGTTACTAGGAGCAATTCTAATTCATTCACT
GATGGTCCTTTACTTGGGAGCAAGGATTATATATCCTATTATGATCATCTAGCAGCTAGT
GCAAAATTAGCGCACTCTCCGCTTTCTCTGTCTCCTCTCAGCCCTAAATATATGAACAAA
ATTAAAGTGACAGGATCTCAAAGATATATAATGAAAGATCTTGAGGATGACTTCCTAGAT
TTAAAGGAAACTGGAGGTTCTGGCGGAGCTAGGATGCCGGAGGTATCAAAAGGATCTAAC
TTGTTACATGATGAACTTGATGTTATGACACCTAAATGGGGTTCATTGAGAAGATATCAA
AATTGGGGCCCTGAATCTTCCCCTACATCTCCCAGAATTGGTTATGGTCGGAGTTTGTCT
TTGCATGTAAGGAGGTCACTTGTTGGCTCCTTTGAGGAGTCTCTTTTATCTGGTCGATAC
TCGTATGGAAAAGACAGTCAGACAATTGATGGTTTCTTAGCTGTTCTAAATGTCACTGGT
GGTAGTTTCTTCCCCACAACTCAGAAACTTCCATTCTCAGTAACAAGCATCGATGAGGAT
AGCTCCTTACTATACTATTCTTCTATTGATCTTGCTGGGAGGTTGCCTTCGAATAACACC
AAAAGCCCAAAGCTCCAAAGAAGCTACAGTAATAATGATTCGCGGTCAGCAAAGAGTCGT
TTACGCATCCCTGTTAAGGGTCGCATACAGCTGGTGGTAAGCAACCCAGAGAAGACTCCA
CTTCATACTTTCTTCTGCAACTATGACTTGAGTGACATGCCTCCTGGAACCAAGACTTTC
GTGCGGCAAAAGGTCACTCTCTCCCCCTCTGCCTTGCCTTCTAATCCAGTGGAAGAAGGA
AGCAAGACTTGTGATGTTAATTCTGGTCACAAATCTTCTCAGTCAGTTTCATGTGGAAAT
GAACCTAGCGAACGGGGAGCTCGTTCTGAATGCTGCAACGGTGGACAGAACTGCAACTCA
AATGATGAATCAGAAAAAGGAGATCTGAAAACAAGATGTCGATCATTGGATAGTGATTCT
AATGAATCAAATAAGTCTAGTTCTCCAGGAAATAAGAAAGACCAGTCTGATTCTGATGGT
TGCTGCTGTCAAATGGATAAGTTTGGCATGGGAGAAAAGAAATCATGCTGCTCACCTTCT
AAGATCAATGATAGTTCAGGTGGAGCTGTGCTTCGTTATGCTTTGCACCTGCGATTTCTG
TGCCCCTCCAAGAAAAAATCCTCGAAATCAATGCTTCGTTGCAAATCTGATCTATCAACG
GCACCATATAGCAGCAATACGCTACCTGAGGAAGAACGGAGGTTCTATCTCTACAATGAT
CTTAGAGTTGTATTTCCTCAAAGGCACTCAGATGCAGATGAAGGCGAGGTACACAAAATT
TAATCTTGGCACTGGCAGCACTACCTTTTCATTTCTTTCTTCCATCATCACTGCGAGTGG
AGCATGATTTCCCCGCCGATCCCAAGTACTTTGACATAAGCAACTGATGGTTGCGCTGCT
GCACCGGACAATAATAATCTGTAAATATGTTATCATGACTAACTTGGTCACCAGCCGTTT
CATCTTTTCACCAACAAATGTACAGGTCAATGTTCCAAATAAAATGCACCATTTAGTTGT
G