Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031569_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:194687973:194691805:1 gene:Zm00001d031569 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl isomerase

Sequence

ATGGACGAGGACTTCGAGATGCCTCCCGCCGGCGCCGATGAGATGATGGGCGACGACGAG
ATGGGCGACTTCGGCGGCGACGAGGGCCCGGTGATGAAGGTGGGCGAGGAGAAGGAGGTC
GGCAAGGAGGGGCTCAAGAAGAAGCTGCTCAAGGAGGGCGAGGGCTGGGAGACTCCCGAG
GTCGGCGACGAGGTTGAAGTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGAC
TCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGGTCAAGTGATAAAG
GGTTGGGATCAAGGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCT
CCAGAGCTGGCTTATGGAGCATCTGGTTCACCTCCAACTATCCCACCCAATGCAACCCTG
CAGTTTGATGTTGAGCTGCTTTCATGGACCAGTGTCAAAGACATTTGCAAAGATGGCGGC
ATATTCAAGAAGATCCTTAAAGAGGGAGAGAAATGGGAGAACCCAAAGGATCCTGATGAA
GTACTTGTGAAATATGAGGCCCGTCTGGAAGATGGTACTGTTGTATCCAAGTCTGAGGGG
GTTGAGTTTACTGTGAAAGATGGCTACTTTTGTCCTGCCCTGGCCAAAGCTGTCAAAACC
ATGAAAAAGGCAGAGAAGGTGCTCCTTACAGTAAAGCCACAATATGGATTTGGTGAGAAG
GGTAGACCAGCAGCTGGAGAGGAAGGTGCTGTGCCGCCAAATGCTTCGCTGCTCATTGAC
CTTGAGTTGATTTCATGGAAGACTGTCACAGAAATTGGGGATGATAAGAAAATCCTTAAG
AAGGTTCTCAAGGAGGGAGAAGGTTATGAGCGTCCCAACGAGGGTGCTGTTGTTGAAGTC
AAAATTATCGGAAAGCTTCAGGATGGCGCGGTGTTTACAAAGAAGGGGCATGACGAAGAG
CCATTTAAATTCAAGACCGATGAAGAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTG
AACATGAAGAAGGGCGAGGTTGCTCTTGTCACAATTCCTCCTGAATATGCATTTGGTTCA
ACTGAGTCAAAGCAGGATCTTGCTGTTGTTCCACCTAACAGCACAGTAATATATGAAGTT
GAGCTTATTTCATTTGTGAAGGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATT
GAGGCTGCTGGTAAGAAGAAAGAGGAAGGGAATGCATTGTTCAAATCGGGCAAATATGCT
AGAGCTTCCAAGCGATATGAGAAGGCTGCCAAGTACATTGAGTACGACACTTCGTTCAGT
GAAGATGAGAAGAAGCAATCCAAGCAACTGAAGATCAGCTGCAACCTAAACAATGCTGCC
TGCAAACTGAAGTTGAAGGATTACAAGGAAGCTGCGAAGCTTTGCACCAAGGTTCTGGAA
CTAGACAGCCAAAATGTCAAGGCTCTCTACAGGAGGGTGCAAGCTTACATTCAACTTGCT
GACCTAGAGCTAGCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGG
TACAGTCTAGGAAATGGATTCTGCAAGGCGGGCAGTACTCTTATTACGTATCACGCTGAT
AATTTTGGAAACAATCCCAGGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATC
AAGGAGTACAACAAGAAGGACGCCAAATTCTACAGCAACATGTTCGCCAAGATGACAAAG
TAA

Peptide Sequence

PEP ID

Zm00001d031569_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:194687973:194691805:1 gene:Zm00001d031569 transcript:Zm00001d031569_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl isomerase

Sequence

MDEDFEMPPAGADEMMGDDEMGDFGGDEGPVMKVGEEKEVGKEGLKKKLLKEGEGWETPE
VGDEVEVHYTGTLLDGTKFDSSRDRGEPFKFKLGQGQVIKGWDQGIKTMKKGENAIFTIP
PELAYGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILKEGEKWENPKDPDE
VLVKYEARLEDGTVVSKSEGVEFTVKDGYFCPALAKAVKTMKKAEKVLLTVKPQYGFGEK
GRPAAGEEGAVPPNASLLIDLELISWKTVTEIGDDKKILKKVLKEGEGYERPNEGAVVEV
KIIGKLQDGAVFTKKGHDEEPFKFKTDEEEVIAGLDRAVLNMKKGEVALVTIPPEYAFGS
TESKQDLAVVPPNSTVIYEVELISFVKDKESWDLNNEEKIEAAGKKKEEGNALFKSGKYA
RASKRYEKAAKYIEYDTSFSEDEKKQSKQLKISCNLNNAACKLKLKDYKEAAKLCTKVLE
LDSQNVKALYRRVQAYIQLADLELAEADIKKALEIDPDNRYSLGNGFCKAGSTLITYHAD
NFGNNPRDVKLEYKILKEKIKEYNKKDAKFYSNMFAKMTK

Transcript Sequence

Transcript ID

Zm00001d031569_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:194687973:194691805:1 gene:Zm00001d031569 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl isomerase

Sequence

TCAAATTTGTGCATTTGTGCACTGTCCTTGTGCACCTGATACGAAGACTTTGGAACACTC
TAGAACCCTACTCGATTGGATTTAAACCCGGGTTTGGGTGGCGTCGCCTTTCATCATTTC
CCCCCTCGTGCTCTCTCTCGAACCTTCTTCCAAAGCACCCGAACCCTAGTGATCTCGGAA
CCCTAGCCGCGCGCGGATCTCGGCTTTTCCCCTTCCTCCACGCCAGCCATGGACGAGGAC
TTCGAGATGCCTCCCGCCGGCGCCGATGAGATGATGGGCGACGACGAGATGGGCGACTTC
GGCGGCGACGAGGGCCCGGTGATGAAGGTGGGCGAGGAGAAGGAGGTCGGCAAGGAGGGG
CTCAAGAAGAAGCTGCTCAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAG
GTTGAAGTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGAT
CGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAGGTCAAGTGATAAAGGGTTGGGATCAA
GGAATCAAGACCATGAAGAAAGGAGAAAATGCTATTTTTACCATTCCTCCAGAGCTGGCT
TATGGAGCATCTGGTTCACCTCCAACTATCCCACCCAATGCAACCCTGCAGTTTGATGTT
GAGCTGCTTTCATGGACCAGTGTCAAAGACATTTGCAAAGATGGCGGCATATTCAAGAAG
ATCCTTAAAGAGGGAGAGAAATGGGAGAACCCAAAGGATCCTGATGAAGTACTTGTGAAA
TATGAGGCCCGTCTGGAAGATGGTACTGTTGTATCCAAGTCTGAGGGGGTTGAGTTTACT
GTGAAAGATGGCTACTTTTGTCCTGCCCTGGCCAAAGCTGTCAAAACCATGAAAAAGGCA
GAGAAGGTGCTCCTTACAGTAAAGCCACAATATGGATTTGGTGAGAAGGGTAGACCAGCA
GCTGGAGAGGAAGGTGCTGTGCCGCCAAATGCTTCGCTGCTCATTGACCTTGAGTTGATT
TCATGGAAGACTGTCACAGAAATTGGGGATGATAAGAAAATCCTTAAGAAGGTTCTCAAG
GAGGGAGAAGGTTATGAGCGTCCCAACGAGGGTGCTGTTGTTGAAGTCAAAATTATCGGA
AAGCTTCAGGATGGCGCGGTGTTTACAAAGAAGGGGCATGACGAAGAGCCATTTAAATTC
AAGACCGATGAAGAGGAAGTTATTGCCGGTCTTGATCGTGCTGTGTTGAACATGAAGAAG
GGCGAGGTTGCTCTTGTCACAATTCCTCCTGAATATGCATTTGGTTCAACTGAGTCAAAG
CAGGATCTTGCTGTTGTTCCACCTAACAGCACAGTAATATATGAAGTTGAGCTTATTTCA
TTTGTGAAGGACAAGGAGTCGTGGGACTTGAACAATGAAGAGAAGATTGAGGCTGCTGGT
AAGAAGAAAGAGGAAGGGAATGCATTGTTCAAATCGGGCAAATATGCTAGAGCTTCCAAG
CGATATGAGAAGGCTGCCAAGTACATTGAGTACGACACTTCGTTCAGTGAAGATGAGAAG
AAGCAATCCAAGCAACTGAAGATCAGCTGCAACCTAAACAATGCTGCCTGCAAACTGAAG
TTGAAGGATTACAAGGAAGCTGCGAAGCTTTGCACCAAGGTTCTGGAACTAGACAGCCAA
AATGTCAAGGCTCTCTACAGGAGGGTGCAAGCTTACATTCAACTTGCTGACCTAGAGCTA
GCAGAGGCCGATATCAAAAAGGCACTGGAAATCGATCCTGACAACAGGTACAGTCTAGGA
AATGGATTCTGCAAGGCGGGCAGTACTCTTATTACGTATCACGCTGATAATTTTGGAAAC
AATCCCAGGGATGTCAAGTTGGAATATAAGATCCTGAAGGAGAAGATCAAGGAGTACAAC
AAGAAGGACGCCAAATTCTACAGCAACATGTTCGCCAAGATGACAAAGTAACTGTCACTG
CCCTAAGTCAGCGGCGAGCTCCACTTAACCCGATTGATTTGTTGCTGATGACAGTGTCGC
TAATAACAGGTAGCTTTTGGGGTGGAGGATGTTGTGGTGAAGCGAAGGGATTAAAAACAC
CGATTTCTGCTGCCGAAGGACTTCGCCCGTTGCTTAACTTCTCGCTTTTCGCATACTTTG
TAGTCAATTAGTGTGCACGGATGCTTGGATATGTGAAACTGAGGAACATGTACTTCGAGG
ATTATTATTGGTTCTGAATTTTTATGTTTTCTGGTTCTTGTTAGGACCATTGAATGTTCT
CTCTATATAATTTTCGGACACATGTTCTTAATAAACCACGGGAGCAAAAGTTTATGCTAA