Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031457_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:1:190910750:190941915:1 gene:Zm00001d031457 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase IV subunit 1
Sequence

ATGGAGCTACATCGTGAACCTCCTGAAGCTATTCTGAATGCCATAAAATTTGATCTCATG
ACGAGTACGGATATGGAAAAATTGAGCAGCATGAGCATAATCGAAGTGAGTGATGTCACT
AGTCCGAAGCTAGGATTACCAAATGGTTCCCTGCAGTGTGAGACTTGTGGATCACAACGT
GGACGCGACTGTGATGGGCATTTTGGTGTGACTAAACTGGCGGCAACAGTACACAATCCA
TACTTCATCGATGACGTTGTTCACTTTCTAAACCGAATATGTCCTGGCTGTCTCAGCCCA
AGGGAAGGCATAGATACAAAGAGATTGGAGAGAGAAAAGGTTCAAGCAACATGCAAGTAT
TGTTCGAAGGATGGCTCTAAACTTTACCCTAGCATAGTCTTTAAGACACTGTCAAGTCCA
AGAGTATTATTATTCAAGAGTAAACTTCACAGAAACGCCAGCGTGATGGAAAGAATTTCG
ATTGTTGCAGAAGCTGCTGACAGAATGCCTAATAGATCAAAGGGTAAAGGTTCGCTTGAA
GGCCTGCCCCTGGATTTTTGGGATTTTGTACCTTCTGAGAATAAACAAGTCCAGTCAAAT
ATGACCAAGATAATATTGTCGCCCTACCAAGTCTTCTACATGTTGAAGAAAAGTGACCCT
GAACTTATCAAACAATTTGTTTCAAGGCGGGAGCTATTGTTTCTATCATGTTTACCAGTA
ACTCCTAATTGCCATCGTGTTGTAGAAATTGGATATGGGCTTCCAGATGGACGCCTAACA
TTTGATGACAGAACAAAGGCTTACAAGAGGATGGTTGATGTCAGTAGGAGAATTGATGAC
TACCGCCAGCATCCACATTTCAGTGTTCTTGCAAGTTCACTTGTCTCAAGCCGGGTTTCA
GAATGCCTAAAGTCATCCAAGTTGTACTCTAAAAAGGCAGATGGAGAGACATCCACAGAT
ACATATGGAATGAAATGGCTAAAGGATGTTGTTCTCAGCAAAAGATCAGATAATGTTTTT
AGGAGTATTATGGTTGGAGACCCAAAAATTAAGTTATGGGAAATTGGCATTCCTGAAGAT
TTATCCTCAAGCCTGGTTGTTTCTGAGCACGTCAGTTCTTATAATTTTCAAAGTACAAAT
CTGAAGTGCAACCTGCACCTTCTAGCCAAGCAAGAACTATTTATTCGGCGAAATGGAAAG
CTAATGTTTCTTCGGAAGGCAGACCAGCTAGAAATAGGTGACATTGCCTATAGACCATTG
CAGGATGGTGATATTATTCTCATCAACAGGCCTCCTTCAGTTCATCAACATTCATTGATT
GCATTATCTGCAAAAATTCTACCAATTCACTCTGTCGTATCAATCAATCCACTATGCTGT
ACACCTTTTGCAGGAGATTTTGATGGTGATTGTTTGCATGGATATATCCCACAATCTATA
CGCTCAAGGGTTGAACTTGAAGAGCTGGTAAGCTTACACAACCAGCTGTTGAATATGCAA
GACGGTCGAAATTTGGTGTCACTAACACATGACTCTCTAGCTGCTGCACATTTGTTAACA
AGTACAGATGTTTTTCTGAAGAAATCTGAATTACAGCAGCTTCAAATGCTATGCCTTTCA
GTATCAACACCAGCACCCGCAGTTATTAAATCTATGAATTTTCAAGGTTCTCTGTGGACT
GGTAAACAACTTTTCAGCATGCTTCTTCCTTCAGGCATGAATTTCAGTTGCGATACGGAG
TTACATATCATGGACAGTGAGGTGCTTACCTGCTCACTGGGTTCTTCTTGGCTACAAAAT
AACACATCTGGTCTTTTCTCTGTCATGTTCAAACAGTATGGTTGCAAGGCACTTGACTTC
CTTTCTTCAGCACAAGAAGTACTATGTGAGTTCTTAACCATGAGGGGTTTAAGTGTCTCT
CTTTCAGATCTCTACATGTTCTCAGACCATTACTCAAGGAGAAAACTAGCTGAGGGAGTT
AAGTTGGCACTGTATGAAGCTGAAGAAGCTTTTCGAGTCAAGAAAATATTGTTAGATCCA
ATTAACATACCAGTTCTGAAGTGTCACGATGAAACTGAAGATGTAACTTACAGACAATCT
GATTGTATCCAGAGCAATCCATCAGTTATCAGATCTTCAATCATGGCATTTAAAGACGTC
TTCCGTGATCTCTTAAAAATGGTGCAACAACATGTTAGTAATGATAACTCAATGATGGTG
ATGATAAATGCAGGAAGCAAGGGTAGCATGTTGAAATATGCTCAACAAACTGCATGTATT
GGTCTTCAACTTCCAGCTAGCAAATTTCCCTTCAGAATTCCTTCCCAACTCTCATGTATT
AGCTGGAATGGACAGAAATCGTTGAACTATGAAGCTGAGAGTACTAGTGAACGTGTGGGA
GGTCAAAACCTTTATGCTGTGATAAAGAATTCCTTCATTGAGGGTTTGAATCCATTGGAA
TGTCTTCTGCACGCTATATCTGGCAGGGCAAACTTCTTTAGTGAAAATGCTGATGTACCA
GGGACATTGACAAGAAAATTAATGTATCACTTGAGAGATATACATGTTGCCTATGATGGA
ACTGTTAGAAGTTCTTATGGGCAGCAAATAGTGCAATTCTCTTATGATAGTGTTGATGAC
CTAGTAGATAAACTCGGCGCCCCGGTTGGATGTCGGGCTGCTTGTTCCATTTCAGAAGCT
GCATATGGAGCTTTGGAACACCCGGTCAATGGTTTAGAGGACTCCCCTCTCATGAATCTA
CAAGAAGTATTTAAGTGTCACAAGGCTACAAATTCAGGGGATCATATTGGTTTGCTTTTC
CTGTCAAGGCATTTGAAGAAGTACAGATACGGTCTGGAATATGCATCCCTAGAAGTTAAA
AACCATCTTGAGCGAGTGAACTTCTCTGATTTGGTTGAAACCATCATGATTATATACGAT
GGACATGACAAAATAAGAAACGAAGGAATGTGGACCACCCATTTTCATATAAACAAGGCA
ATGATGAAGAAAAAAAGATTAGGATTGAGATTTGTTGTAGATGAACTTGCAAAAGAGTAT
GACACCACCAGAGATCAGCTAAACAACGCAATCCCATCAATTCGTATCTCAAGGAGAAAA
TGTTTAGTAGGTGACGAGGGTGTTAAAAGTTCATCATGCTGTATCGCTGTCGTAGCACAT
GCTGAACGCAACTCCATCTCTCAGTTGGACACTATCAAGACAAGGGTGATTCCAAGCATA
CTGGATACACTGCTGAAAGGTTGT

Peptide Sequence

PEP ID

Zm00001d031457_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:1:190910750:190941915:1 gene:Zm00001d031457 transcript:Zm00001d031457_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase IV subunit 1
Sequence

MELHREPPEAILNAIKFDLMTSTDMEKLSSMSIIEVSDVTSPKLGLPNGSLQCETCGSQR
GRDCDGHFGVTKLAATVHNPYFIDDVVHFLNRICPGCLSPREGIDTKRLEREKVQATCKY
CSKDGSKLYPSIVFKTLSSPRVLLFKSKLHRNASVMERISIVAEAADRMPNRSKGKGSLE
GLPLDFWDFVPSENKQVQSNMTKIILSPYQVFYMLKKSDPELIKQFVSRRELLFLSCLPV
TPNCHRVVEIGYGLPDGRLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLASSLVSSRVS
ECLKSSKLYSKKADGETSTDTYGMKWLKDVVLSKRSDNVFRSIMVGDPKIKLWEIGIPED
LSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKLMFLRKADQLEIGDIAYRPL
QDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCTPFAGDFDGDCLHGYIPQSI
RSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTSTDVFLKKSELQQLQMLCLS
VSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTELHIMDSEVLTCSLGSSWLQN
NTSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVSLSDLYMFSDHYSRRKLAEGV
KLALYEAEEAFRVKKILLDPINIPVLKCHDETEDVTYRQSDCIQSNPSVIRSSIMAFKDV
FRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTACIGLQLPASKFPFRIPSQLSCI
SWNGQKSLNYEAESTSERVGGQNLYAVIKNSFIEGLNPLECLLHAISGRANFFSENADVP
GTLTRKLMYHLRDIHVAYDGTVRSSYGQQIVQFSYDSVDDLVDKLGAPVGCRAACSISEA
AYGALEHPVNGLEDSPLMNLQEVFKCHKATNSGDHIGLLFLSRHLKKYRYGLEYASLEVK
NHLERVNFSDLVETIMIIYDGHDKIRNEGMWTTHFHINKAMMKKKRLGLRFVVDELAKEY
DTTRDQLNNAIPSIRISRRKCLVGDEGVKSSSCCIAVVAHAERNSISQLDTIKTRVIPSI
LDTLLKGC

Transcript Sequence

Transcript ID

Zm00001d031457_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:190910750:190941915:1 gene:Zm00001d031457 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-directed RNA polymerase IV subunit 1
Sequence

AAACCGCAAAAGGAGATTCTCCTCGCCCCTTCCACTAGACTACTGGAGTACCCGACGGCC
CGAGGCGGCGAGCTCGTCGGCGACTGACCGCCGCCGGAGCAGCCGCCGCCTCCCGCTGGT
TCCTGTACCACAGCCTCGCAGGAGCGCCTCCGTTCGCTACGCCACCCGCCACTGTGCTGT
CGGAAGGCAGCTCGGACTACTCGCGCCGCCTCGGCTTCTCCGCGCTCGCCGCCCCTCCGC
CGGCGTGATCAAGGATGGAGCTACATCGTGAACCTCCTGAAGCTATTCTGAATGCCATAA
AATTTGATCTCATGACGAGTACGGATATGGAAAAATTGAGCAGCATGAGCATAATCGAAG
TGAGTGATGTCACTAGTCCGAAGCTAGGATTACCAAATGGTTCCCTGCAGTGTGAGACTT
GTGGATCACAACGTGGACGCGACTGTGATGGGCATTTTGGTGTGACTAAACTGGCGGCAA
CAGTACACAATCCATACTTCATCGATGACGTTGTTCACTTTCTAAACCGAATATGTCCTG
GCTGTCTCAGCCCAAGGGAAGGCATAGATACAAAGAGATTGGAGAGAGAAAAGGTTCAAG
CAACATGCAAGTATTGTTCGAAGGATGGCTCTAAACTTTACCCTAGCATAGTCTTTAAGA
CACTGTCAAGTCCAAGAGTATTATTATTCAAGAGTAAACTTCACAGAAACGCCAGCGTGA
TGGAAAGAATTTCGATTGTTGCAGAAGCTGCTGACAGAATGCCTAATAGATCAAAGGGTA
AAGGTTCGCTTGAAGGCCTGCCCCTGGATTTTTGGGATTTTGTACCTTCTGAGAATAAAC
AAGTCCAGTCAAATATGACCAAGATAATATTGTCGCCCTACCAAGTCTTCTACATGTTGA
AGAAAAGTGACCCTGAACTTATCAAACAATTTGTTTCAAGGCGGGAGCTATTGTTTCTAT
CATGTTTACCAGTAACTCCTAATTGCCATCGTGTTGTAGAAATTGGATATGGGCTTCCAG
ATGGACGCCTAACATTTGATGACAGAACAAAGGCTTACAAGAGGATGGTTGATGTCAGTA
GGAGAATTGATGACTACCGCCAGCATCCACATTTCAGTGTTCTTGCAAGTTCACTTGTCT
CAAGCCGGGTTTCAGAATGCCTAAAGTCATCCAAGTTGTACTCTAAAAAGGCAGATGGAG
AGACATCCACAGATACATATGGAATGAAATGGCTAAAGGATGTTGTTCTCAGCAAAAGAT
CAGATAATGTTTTTAGGAGTATTATGGTTGGAGACCCAAAAATTAAGTTATGGGAAATTG
GCATTCCTGAAGATTTATCCTCAAGCCTGGTTGTTTCTGAGCACGTCAGTTCTTATAATT
TTCAAAGTACAAATCTGAAGTGCAACCTGCACCTTCTAGCCAAGCAAGAACTATTTATTC
GGCGAAATGGAAAGCTAATGTTTCTTCGGAAGGCAGACCAGCTAGAAATAGGTGACATTG
CCTATAGACCATTGCAGGATGGTGATATTATTCTCATCAACAGGCCTCCTTCAGTTCATC
AACATTCATTGATTGCATTATCTGCAAAAATTCTACCAATTCACTCTGTCGTATCAATCA
ATCCACTATGCTGTACACCTTTTGCAGGAGATTTTGATGGTGATTGTTTGCATGGATATA
TCCCACAATCTATACGCTCAAGGGTTGAACTTGAAGAGCTGGTAAGCTTACACAACCAGC
TGTTGAATATGCAAGACGGTCGAAATTTGGTGTCACTAACACATGACTCTCTAGCTGCTG
CACATTTGTTAACAAGTACAGATGTTTTTCTGAAGAAATCTGAATTACAGCAGCTTCAAA
TGCTATGCCTTTCAGTATCAACACCAGCACCCGCAGTTATTAAATCTATGAATTTTCAAG
GTTCTCTGTGGACTGGTAAACAACTTTTCAGCATGCTTCTTCCTTCAGGCATGAATTTCA
GTTGCGATACGGAGTTACATATCATGGACAGTGAGGTGCTTACCTGCTCACTGGGTTCTT
CTTGGCTACAAAATAACACATCTGGTCTTTTCTCTGTCATGTTCAAACAGTATGGTTGCA
AGGCACTTGACTTCCTTTCTTCAGCACAAGAAGTACTATGTGAGTTCTTAACCATGAGGG
GTTTAAGTGTCTCTCTTTCAGATCTCTACATGTTCTCAGACCATTACTCAAGGAGAAAAC
TAGCTGAGGGAGTTAAGTTGGCACTGTATGAAGCTGAAGAAGCTTTTCGAGTCAAGAAAA
TATTGTTAGATCCAATTAACATACCAGTTCTGAAGTGTCACGATGAAACTGAAGATGTAA
CTTACAGACAATCTGATTGTATCCAGAGCAATCCATCAGTTATCAGATCTTCAATCATGG
CATTTAAAGACGTCTTCCGTGATCTCTTAAAAATGGTGCAACAACATGTTAGTAATGATA
ACTCAATGATGGTGATGATAAATGCAGGAAGCAAGGGTAGCATGTTGAAATATGCTCAAC
AAACTGCATGTATTGGTCTTCAACTTCCAGCTAGCAAATTTCCCTTCAGAATTCCTTCCC
AACTCTCATGTATTAGCTGGAATGGACAGAAATCGTTGAACTATGAAGCTGAGAGTACTA
GTGAACGTGTGGGAGGTCAAAACCTTTATGCTGTGATAAAGAATTCCTTCATTGAGGGTT
TGAATCCATTGGAATGTCTTCTGCACGCTATATCTGGCAGGGCAAACTTCTTTAGTGAAA
ATGCTGATGTACCAGGGACATTGACAAGAAAATTAATGTATCACTTGAGAGATATACATG
TTGCCTATGATGGAACTGTTAGAAGTTCTTATGGGCAGCAAATAGTGCAATTCTCTTATG
ATAGTGTTGATGACCTAGTAGATAAACTCGGCGCCCCGGTTGGATGTCGGGCTGCTTGTT
CCATTTCAGAAGCTGCATATGGAGCTTTGGAACACCCGGTCAATGGTTTAGAGGACTCCC
CTCTCATGAATCTACAAGAAGTATTTAAGTGTCACAAGGCTACAAATTCAGGGGATCATA
TTGGTTTGCTTTTCCTGTCAAGGCATTTGAAGAAGTACAGATACGGTCTGGAATATGCAT
CCCTAGAAGTTAAAAACCATCTTGAGCGAGTGAACTTCTCTGATTTGGTTGAAACCATCA
TGATTATATACGATGGACATGACAAAATAAGAAACGAAGGAATGTGGACCACCCATTTTC
ATATAAACAAGGCAATGATGAAGAAAAAAAGATTAGGATTGAGATTTGTTGTAGATGAAC
TTGCAAAAGAGTATGACACCACCAGAGATCAGCTAAACAACGCAATCCCATCAATTCGTA
TCTCAAGGAGAAAATGTTTAGTAGGTGACGAGGGTGTTAAAAGTTCATCATGCTGTATCG
CTGTCGTAGCACATGCTGAACGCAACTCCATCTCTCAGTTGGACACTATCAAGACAAGGG
TGATTCCAAGCATACTGGATACACTGCTGAAAGGTTGTT