Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031412_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:1:189291478:189294717:1 gene:Zm00001d031412 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycerophosphodiester phosphodiesterase GDPDL3
Sequence

ATGTCCAGCTACATACACTCGATCCGGAAGCTGGTGCGCATGGACTACATCTCGTCGCCT
GAGATCGGCTTCCTCAGAAACATATCCGCAAGAGTCCGCCGCAGAACCAAGCTCGTGTTC
AGCTTTCTCGACAAAAAACTCCTGGATCACTCCGTGAACCAGACATACGGTTCGCTGGCG
AGGAACCTGACGTTCGTCAGGTCCGTCGCGTCTGGCATACTGGTCCCGAAGGACTACATC
TGGCCGGTGACGGCCGATAACTACCTGCTGCCGTCCACGTCGATCGTCACCGAAGCGCAC
GAAGCGGGGCTGGAGATATACGCCTCTGGTTTTGTGAACGATAAGGCTGTCCCCTTTAAC
TACAGCTACGATCCTCTGGCGGAGTACCTGAACTTCGTCGGCGATGGTGGCTTCTCGGTT
GATGGCGTACTGTCGGACTACCCTATTACTGCATCAGAGGCAATTGGTTGTTTTGCTAAC
CTGAATTCAAGTAAGACTGATCATGTTACAGGGAAACCCTTAGTTATCTCCCACAATGGC
GCTAGTGGAGACTACCCGGACTGTACAGACCTGGCCTACCACAGTGCCGTTGACGATGGC
GCAGATGTCATCGACTGTCCTGTTCAAGTGACAAGCGATGGAGTCCTCATGTGCATGAGT
TCCATTAACCTGCTTGACACCACCAATGTTCAGAGAACACCTTTCGCCACTCCTTCCCTG
GTTCCATCTATCTTAATAAATGTAATTCTTTCATCACTGATCAATCTATCTTCTCTACCG
CAGAATGCTGCGTTCATAGCAAAGTCACTAGGGATCGACATGGTTGACTCCGTAACCGCC
GCCTTAAGTGCCGCCGGCTTCAGTAACCAGACCACCAAGGAAGTTCTGATCCGGTCAACA
GACAGCGCCGTCCTCGTCAAACTGAAGCAGCAGAAAACGAGATGCAAGCTCGTGTACACC
CTCCCCCTAGGCATCGGGGACGCTTCCAAACCCTCGCTGAAGGACATCAAGGCGTTCGCG
GAAGCCGTAGTCGTCGACAGGACCTCCGTCTTCGCTCTGAGCTACGATTTCATCATGGGA
CAGAACAGGATCGTGCGAGACCTGCAGGCGGCGGGGCTGGCTGTGTACGCGCAGGTGTTC
CGGAACGAGTACGTAGCGCACCCGTTTGATTTCTTGGGGGATCCGACCGTGGAGATCAAC
TACTATGTTCAGACGTTTAATCTGTCCGGCATGATCACTGATTTCCCCAAGACAGTCAGA
AGATACAAAGAGAACACCTGTACAGCTCTGGGGAAGGATATGCCCAAGTACATGCGGCCA
GTTGAGGCTGGCTCCCTTGCAGATTTCCTCCGGTCCTTCCAAACCCAGCCGCCGTCTGTG
GCACCGATGCCGGCGCTGAACTCTTCAAGCGTGGAGGAGCCGCCTCTTCCAACTGCTGCG
CCGAGAAACGTGCCGCCTGGTGGTGGCGCCCCAGCGGACGCCGCCGGGACTGCTGGCGGC
GCTGCTCCTTCTGATGCGAGTTCCGGCGGCGCTCCTCCTTCTGACGCGCGTCACACGGCT
ACCGGAAGTAGCGGTATGCTGCTTGTGGTGCTGGTTTCCGCGGCTCTGCTGATCTGA

Peptide Sequence

PEP ID

Zm00001d031412_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:1:189291478:189294717:1 gene:Zm00001d031412 transcript:Zm00001d031412_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycerophosphodiester phosphodiesterase GDPDL3
Sequence

MSSYIHSIRKLVRMDYISSPEIGFLRNISARVRRRTKLVFSFLDKKLLDHSVNQTYGSLA
RNLTFVRSVASGILVPKDYIWPVTADNYLLPSTSIVTEAHEAGLEIYASGFVNDKAVPFN
YSYDPLAEYLNFVGDGGFSVDGVLSDYPITASEAIGCFANLNSSKTDHVTGKPLVISHNG
ASGDYPDCTDLAYHSAVDDGADVIDCPVQVTSDGVLMCMSSINLLDTTNVQRTPFATPSL
VPSILINVILSSLINLSSLPQNAAFIAKSLGIDMVDSVTAALSAAGFSNQTTKEVLIRST
DSAVLVKLKQQKTRCKLVYTLPLGIGDASKPSLKDIKAFAEAVVVDRTSVFALSYDFIMG
QNRIVRDLQAAGLAVYAQVFRNEYVAHPFDFLGDPTVEINYYVQTFNLSGMITDFPKTVR
RYKENTCTALGKDMPKYMRPVEAGSLADFLRSFQTQPPSVAPMPALNSSSVEEPPLPTAA
PRNVPPGGGAPADAAGTAGGAAPSDASSGGAPPSDARHTATGSSGMLLVVLVSAALLI

Transcript Sequence

Transcript ID

Zm00001d031412_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:189291478:189294717:1 gene:Zm00001d031412 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glycerophosphodiester phosphodiesterase GDPDL3
Sequence

TCCGCTTCCCGTGCGCCGCGGGAACAAGGTTCTGGAAGCTTCGGAGATGGGGAGGAGTAG
ACGCCACGAAGGAGGAGGAGGAGGAGAACGACGGGGTGCGGGTGCTGGAGGGGTGGCCGC
CGCCGCCTTCGCCGCTCTGCTGCTGGGCTGCGTCGTCATGGCCCTCGTCGGCGGCGCCGC
CGCGCAGGGCCCCCGGCTCCCCTCCGACTACAAAACCCTCAGCGGCGCCGCTCCGCTCGT
GGTGGCCAGAGGCGGGTTCTCAGGAGCGTTCCCGGACTCCAGCGAGGGCGCCTACTCCTT
CGGGGCGTCCGCCAGCGCGCCTGGCACGGCCATGTGGTGCGACGTCCAGCTGACCAAGGA
CGGCGTCGGGCTCTGCCTCCGCGACGTCAACATGAAGAACTGCACCACCGTCGACCAGAC
GTACCCCGGGAGGAAGCGGACCTACGTCATCGACGGCGTCCACAAGACCGGCTGGTTCGT
CCCGGACTTCACCAGCGCCGAGCTTCTTCAGTCCGTGTACCTAACACAAGCAATCTGGTC
TCGCACTGAGAGGATGGACGGCATATACCCTATCGTCACTGTCCCTGACGTTCAGTCCAT
CGTCAACACGTCTCCTATCTGGCTGAATGTCCAGCTACATACACTCGATCCGGAAGCTGG
TGCGCATGGACTACATCTCGTCGCCTGAGATCGGCTTCCTCAGAAACATATCCGCAAGAG
TCCGCCGCAGAACCAAGCTCGTGTTCAGCTTTCTCGACAAAAAACTCCTGGATCACTCCG
TGAACCAGACATACGGTTCGCTGGCGAGGAACCTGACGTTCGTCAGGTCCGTCGCGTCTG
GCATACTGGTCCCGAAGGACTACATCTGGCCGGTGACGGCCGATAACTACCTGCTGCCGT
CCACGTCGATCGTCACCGAAGCGCACGAAGCGGGGCTGGAGATATACGCCTCTGGTTTTG
TGAACGATAAGGCTGTCCCCTTTAACTACAGCTACGATCCTCTGGCGGAGTACCTGAACT
TCGTCGGCGATGGTGGCTTCTCGGTTGATGGCGTACTGTCGGACTACCCTATTACTGCAT
CAGAGGCAATTGGTTGTTTTGCTAACCTGAATTCAAGTAAGACTGATCATGTTACAGGGA
AACCCTTAGTTATCTCCCACAATGGCGCTAGTGGAGACTACCCGGACTGTACAGACCTGG
CCTACCACAGTGCCGTTGACGATGGCGCAGATGTCATCGACTGTCCTGTTCAAGTGACAA
GCGATGGAGTCCTCATGTGCATGAGTTCCATTAACCTGCTTGACACCACCAATGTTCAGA
GAACACCTTTCGCCACTCCTTCCCTGGTTCCATCTATCTTAATAAATGTAATTCTTTCAT
CACTGATCAATCTATCTTCTCTACCGCAGAATGCTGCGTTCATAGCAAAGTCACTAGGGA
TCGACATGGTTGACTCCGTAACCGCCGCCTTAAGTGCCGCCGGCTTCAGTAACCAGACCA
CCAAGGAAGTTCTGATCCGGTCAACAGACAGCGCCGTCCTCGTCAAACTGAAGCAGCAGA
AAACGAGATGCAAGCTCGTGTACACCCTCCCCCTAGGCATCGGGGACGCTTCCAAACCCT
CGCTGAAGGACATCAAGGCGTTCGCGGAAGCCGTAGTCGTCGACAGGACCTCCGTCTTCG
CTCTGAGCTACGATTTCATCATGGGACAGAACAGGATCGTGCGAGACCTGCAGGCGGCGG
GGCTGGCTGTGTACGCGCAGGTGTTCCGGAACGAGTACGTAGCGCACCCGTTTGATTTCT
TGGGGGATCCGACCGTGGAGATCAACTACTATGTTCAGACGTTTAATCTGTCCGGCATGA
TCACTGATTTCCCCAAGACAGTCAGAAGATACAAAGAGAACACCTGTACAGCTCTGGGGA
AGGATATGCCCAAGTACATGCGGCCAGTTGAGGCTGGCTCCCTTGCAGATTTCCTCCGGT
CCTTCCAAACCCAGCCGCCGTCTGTGGCACCGATGCCGGCGCTGAACTCTTCAAGCGTGG
AGGAGCCGCCTCTTCCAACTGCTGCGCCGAGAAACGTGCCGCCTGGTGGTGGCGCCCCAG
CGGACGCCGCCGGGACTGCTGGCGGCGCTGCTCCTTCTGATGCGAGTTCCGGCGGCGCTC
CTCCTTCTGACGCGCGTCACACGGCTACCGGAAGTAGCGGTATGCTGCTTGTGGTGCTGG
TTTCCGCGGCTCTGCTGATCTGATTCTGAGCAGACACATGAGACTGTATAGTAGACAGAG
CCGAAGCAAATGCAAATCTCCGTTGGATTCGATCAAGCTTTGACCAGCGATATACCATAC
ACTTGTTTTTCTCGGGTATATATGTTTGTATTTGGCCGCATTTTTCACGTCCACATGTGT
AAAAAATTGTCAGTGGAAACGTTATATGTATCAGCCGGAAATTTTATCCGGCGATGATCA
AAGT