Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d031182_T002
CDS Infomation	cds chromosome:B73_RefGen_v4:1:181575982:181579654:1 gene:Zm00001d031182 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 84 description: Homeobox-transcription factor 84
Sequence	ATGGCTACCTACTACTCGAGCCAGGGCAGTGAAAGGGAGCCGTCGCAGAACATGTACTCC AGAGACCCCGGCAATGGCACCGCGTCCTACCCTCCTCTGCCGTCGGCTCTGGGGAACTTG CTCTACTTGAACAGCCCGGCTTCTGGCGGGCCGTACACGGATTTCGGCGGCGTCCAGCAG GACTGCATCGAGATGCCTGAACCTGGACATCCTTCGGTGATGTCCCATGACTCGTCTGCC AGGGAGATCGAGCCCGACATGCTGGGGCAGCAGCGGCGCTCGTTCGGCCTAGCCAGAGGC ATGAAGGACGAGGTGCTGATGCGCATGATGGATGGATCAGGATCACATAGCAGCGCAGCC GATGCCATCCATGACGACGCCCCGAATGGCATACAGCTCGATTTCGGCGTTCTGGGCAGC CACGGCCCGCCGGCGCAGGGCGGCCAAGGCTCCTTGTCTCTGAGCCTCAACACGCACATC ATGGCGCCTGCCTTGCCGTACTGGCCTGTCGTCAAGGCAGACATGCTGTCGCCGCACTCC TACGACCATGGCTGCGGCGGCGGCAGCGGCGGCCTTGGCTCGGAGCCGTCGCGGGCGATC CGGAACTCGAGGTATCTGAAGGCGGCACAGGAGCTGCTTGACGAGGTCGTCAACGTCTGG AACAGCATCAAGCAGAAGGCCCAGAAAGAGCAGGTGGAGGCAGGGAAGACGGAAGGGAAG GAGAACGAGGGAGGAGGGCCCAAGAGTGAGGGTCCGCAGGAGTCTGGCGCCAACGCTGCA CCGGAGCTTTCTACTGCCGAGAAGCAGGAGCTTCAGAACAAGATGGCGAAGCTGATGGCG ATGCTGGACGAGGTGGACCGGAAGTACAAGCACTACTACCACCAAATGCAGAGCGTGGTC TCGTCCTTCGACATGGTAGCGGGGGCTGGAGCCGCCAAGCCATACACCGCGGTGGCTCTG CAGACGATCTCGCGCCACTTCCGGTGCCTCAAGGACGCCATCAACGACCAGATCAGCGTC ATCAGGAAGAAGCTCGGGGAGGAGGAGAGCTCGTCCGGCAGGGAGGGCAGGCTGACCCGT CTCCGCTACATCGACCAGCAGCTCAGGCAGCAGCGGGCGTTCCAGCAGTACGGCATGATC CCGCAGAACGCTTGGCGGCCACAGAGGGGCCTTCCTGAGAACTCCGTCACCATTCTTCGT GCTTGGCTCTTCGAGCACTTCCTTCACCCGTACCCTAAGGATTCTGAAAAGCTGATGCTG GCAAGGCAAACAGGCCTGACGAGGAGTCAGATTTCGAACTGGTTCATCAACGCCCGCGTC CGCCTCTGGAAACCCATGATCGAGGACATGTACAAGGAAGAGACCGGAGACATCGAGCAA GACTCCAACTCCTCCTCCGACAACGCGCCAGCAGGAAGCAAGGCCAAGACGGCGTCTTCG CGAGACAAGGAGGACCACCTGGCGAGAAGCTGCTGCACGCCGCGGGCCGTCTGCGAGAGC AGCAGCCAGCTGAGCGAGCCACCAGGAGGAGCCAGCATGAGGGCCATGAGCGTCGCCGCC GCCGCCGCTGGAGCGCCCATGGGGTTATTCCAGAACGAGCCTGGCCACGACCACGACCAC GACGACAGCTTCATGAGCCTGATGCTCAAGGAGCAGCGACCGAACGACGGCGGCGGCGGC CTCCTCCTCCACCACAGCGCCGTGGCGCAGCACCAGGACGAGAACGCCCGGTTCATGGCG TACCACCTGGCGGAGCTGGGCAGGTACGGCAACGGCAACGTGTCGCTCACCCTGGGGCTG CAGCGCTCCAGCAGCAGCCTCTCGGTTCCGCACGCTCAGCAGAGCTTCCCCGGTGTCGGA ATCGGTGTCGGAGACGACGACATCTACAATGCCACCGCCGCTCCTCTCGGTGTCAGCGTG GCGTCGCCGGACTACGAGTCCATGAGCCAGATGGATCAGCGGCAACGGTTCGAGCAGTCG CCCCTTCTCCATGATTTTGTGGCGTGA

Peptide Sequence

PEP ID	Zm00001d031182_P002
PEP Infomation	pep chromosome:B73_RefGen_v4:1:181575982:181579654:1 gene:Zm00001d031182 transcript:Zm00001d031182_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 84 description: Homeobox-transcription factor 84
Sequence	MATYYSSQGSEREPSQNMYSRDPGNGTASYPPLPSALGNLLYLNSPASGGPYTDFGGVQQ DCIEMPEPGHPSVMSHDSSAREIEPDMLGQQRRSFGLARGMKDEVLMRMMDGSGSHSSAA DAIHDDAPNGIQLDFGVLGSHGPPAQGGQGSLSLSLNTHIMAPALPYWPVVKADMLSPHS YDHGCGGGSGGLGSEPSRAIRNSRYLKAAQELLDEVVNVWNSIKQKAQKEQVEAGKTEGK ENEGGGPKSEGPQESGANAAPELSTAEKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVV SSFDMVAGAGAAKPYTAVALQTISRHFRCLKDAINDQISVIRKKLGEEESSSGREGRLTR LRYIDQQLRQQRAFQQYGMIPQNAWRPQRGLPENSVTILRAWLFEHFLHPYPKDSEKLML ARQTGLTRSQISNWFINARVRLWKPMIEDMYKEETGDIEQDSNSSSDNAPAGSKAKTASS RDKEDHLARSCCTPRAVCESSSQLSEPPGGASMRAMSVAAAAAGAPMGLFQNEPGHDHDH DDSFMSLMLKEQRPNDGGGGLLLHHSAVAQHQDENARFMAYHLAELGRYGNGNVSLTLGL QRSSSSLSVPHAQQSFPGVGIGVGDDDIYNATAAPLGVSVASPDYESMSQMDQRQRFEQS PLLHDFVA

Transcript Sequence

Transcript ID	Zm00001d031182_T002
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:181575982:181579654:1 gene:Zm00001d031182 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Homeobox-transcription factor 84 description: Homeobox-transcription factor 84
Sequence	TTGGTCTTTTTTTTTTCTTTTTCTTGTGCTGCTGTTGGGTTTTCTGAGATTGAGGTGGTG GCACGCGCACGCGCTCACCAAAGTTCTTCCTTCCCTCGCTCTGCCGTACGCACCGACGAC CAAAGTTACTGATGATGCTGCCGAACCACGTAGTATCCCGGTTCCTTCGAATTCTCTCTT TGTTTCTAGCGTTGGGGCCCTCGGGGTTGGGGATGGATGAATTCTCCGAATTCCCCCTTC CTCTTTGGATGTTTCTACCATTGGAAGAAAGCCAAGCTCTGTTCCCTTTACTCCTGCCCT TTTTTTATGTGGTTCTATTTGTGCTGTGTTGCAATTACTTATTACTGCACCCCAAGTGCG TTTTTCGACCAAGGAAATCTTACGTCTTTTCATCTTCTTCTCTGTTATCTAGTATTATAC AGCCGCATCTGTTGTTGCAGCTGTTCGGATTGGTATAGCTGCAATCCGTAGAAATACTGT GCCAGTCACAACTGAATTAAAGCTGCGGGTGTTTTTTTTTTTTTGCCTCCTAATTCTCTC CTGCTTTCAGCCACTTTTACGTCGTGAATATATAGTTTCTACTAGAATTTTTTTTGTTGT TTTTGTTGTGTGTGCCTCAAGACCGTGGACGAGGAGGCTAAGCAGTTTTATCTCTTCTCC CAGATTGAACAGAAAAAGGGCTTATTAGTTCGAATTATTTGATTTTTGGTTTCTTGAGGC GTGTGATTGTTTGTCTTGGTATAGCAGATCGAATTTTGTTTCGTACTAAACCGTTTTTTG CGAACAAAGTTTCTGTTTTTTTTTGGGTACTAAATCGGCGTGTCATTTATACTGCTGCAG AGAAGAGAGAACTTATAATCGATCTTGGATTTCTTGTGACTCGATTTCAGGAACGCCGTA AGCTGAAGCTTTCAGTCGGCTGCTGAAACCTCGTTCATCAGTCAGTCTCCAAGGCGGTTC GATCGTGGTGGCCATCATCAGCCGAGCGGCCAGAGCTGCACGATGGCTACCTACTACTCG AGCCAGGGCAGTGAAAGGGAGCCGTCGCAGAACATGTACTCCAGAGACCCCGGCAATGGC ACCGCGTCCTACCCTCCTCTGCCGTCGGCTCTGGGGAACTTGCTCTACTTGAACAGCCCG GCTTCTGGCGGGCCGTACACGGATTTCGGCGGCGTCCAGCAGGACTGCATCGAGATGCCT GAACCTGGACATCCTTCGGTGATGTCCCATGACTCGTCTGCCAGGGAGATCGAGCCCGAC ATGCTGGGGCAGCAGCGGCGCTCGTTCGGCCTAGCCAGAGGCATGAAGGACGAGGTGCTG ATGCGCATGATGGATGGATCAGGATCACATAGCAGCGCAGCCGATGCCATCCATGACGAC GCCCCGAATGGCATACAGCTCGATTTCGGCGTTCTGGGCAGCCACGGCCCGCCGGCGCAG GGCGGCCAAGGCTCCTTGTCTCTGAGCCTCAACACGCACATCATGGCGCCTGCCTTGCCG TACTGGCCTGTCGTCAAGGCAGACATGCTGTCGCCGCACTCCTACGACCATGGCTGCGGC GGCGGCAGCGGCGGCCTTGGCTCGGAGCCGTCGCGGGCGATCCGGAACTCGAGGTATCTG AAGGCGGCACAGGAGCTGCTTGACGAGGTCGTCAACGTCTGGAACAGCATCAAGCAGAAG GCCCAGAAAGAGCAGGTGGAGGCAGGGAAGACGGAAGGGAAGGAGAACGAGGGAGGAGGG CCCAAGAGTGAGGGTCCGCAGGAGTCTGGCGCCAACGCTGCACCGGAGCTTTCTACTGCC GAGAAGCAGGAGCTTCAGAACAAGATGGCGAAGCTGATGGCGATGCTGGACGAGGTGGAC CGGAAGTACAAGCACTACTACCACCAAATGCAGAGCGTGGTCTCGTCCTTCGACATGGTA GCGGGGGCTGGAGCCGCCAAGCCATACACCGCGGTGGCTCTGCAGACGATCTCGCGCCAC TTCCGGTGCCTCAAGGACGCCATCAACGACCAGATCAGCGTCATCAGGAAGAAGCTCGGG GAGGAGGAGAGCTCGTCCGGCAGGGAGGGCAGGCTGACCCGTCTCCGCTACATCGACCAG CAGCTCAGGCAGCAGCGGGCGTTCCAGCAGTACGGCATGATCCCGCAGAACGCTTGGCGG CCACAGAGGGGCCTTCCTGAGAACTCCGTCACCATTCTTCGTGCTTGGCTCTTCGAGCAC TTCCTTCACCCGTACCCTAAGGATTCTGAAAAGCTGATGCTGGCAAGGCAAACAGGCCTG ACGAGGAGTCAGATTTCGAACTGGTTCATCAACGCCCGCGTCCGCCTCTGGAAACCCATG ATCGAGGACATGTACAAGGAAGAGACCGGAGACATCGAGCAAGACTCCAACTCCTCCTCC GACAACGCGCCAGCAGGAAGCAAGGCCAAGACGGCGTCTTCGCGAGACAAGGAGGACCAC CTGGCGAGAAGCTGCTGCACGCCGCGGGCCGTCTGCGAGAGCAGCAGCCAGCTGAGCGAG CCACCAGGAGGAGCCAGCATGAGGGCCATGAGCGTCGCCGCCGCCGCCGCTGGAGCGCCC ATGGGGTTATTCCAGAACGAGCCTGGCCACGACCACGACCACGACGACAGCTTCATGAGC CTGATGCTCAAGGAGCAGCGACCGAACGACGGCGGCGGCGGCCTCCTCCTCCACCACAGC GCCGTGGCGCAGCACCAGGACGAGAACGCCCGGTTCATGGCGTACCACCTGGCGGAGCTG GGCAGGTACGGCAACGGCAACGTGTCGCTCACCCTGGGGCTGCAGCGCTCCAGCAGCAGC CTCTCGGTTCCGCACGCTCAGCAGAGCTTCCCCGGTGTCGGAATCGGTGTCGGAGACGAC GACATCTACAATGCCACCGCCGCTCCTCTCGGTGTCAGCGTGGCGTCGCCGGACTACGAG TCCATGAGCCAGATGGATCAGCGGCAACGGTTCGAGCAGTCGCCCCTTCTCCATGATTTT GTGGCGTGATTGTTCGTTTGCCTATACTCACTCTCCGTTCCAAATCGCAAGACGTTTTTT TTTTTGGCTTTTCTAAATCCATGGCCTTTGCTATACTAAATATAAGATATGTGTTTAGAT ATACCCAAAACGTTTTATAATTTGGAACGGAAGAGAGTACCTCAGATGATTATATATGTG TTACATATGTGCCTGAAAGGAGCATTGGGTTGTAGTAGCCTGTAGTTTTTCAATTGTATA CAGATTGGTGGTATACTGGTATAGCAGGAAATGTAATGTAGCGTAGGTGGGTTGGGGTGA TAGGGGTGAAAAGGAAAAGGGAAAGGATCTTGTAAAGATGAAACACACTATACTATACGT GTAAAAGCTTGTGATTTGG