Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031145_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:179585581:179594014:-1 gene:Zm00001d031145 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCGTCGTCCACGTCCGCCTCCGGCGCCGTAGGGCTAGGGCGGCGACAGCCTCCCAAT
CCCATTGCAGCAGTAGGGGGGCTTAGAAGAAGCGATAGCAGCAGATGGTGGTGGGCGAGA
TTAATGGAGAAGAACTACAGTGATGCTGAGAGATTTCTCGCAAGGAGGCCGGAAGAGAGG
CTGATCAACGATTACCTGCTGCTTGAGTCCGCCGCACGGAAGGTCGCCACCGGCCTCGCG
TACCTGTTGCTGACGTGGTCCACCGTCGTCCTCCTTGGTGGCTTCGTCTCCGTGCTCAAG
CTCATCGACTTTTGGTGTCTCGCTGCCATTAGCACGTCATTTGCAGTCAATCTAGCAGAT
TTGTACGAGTACACGACTGGATATTTCCTGGCAGCGGGCAATGTGTACATTGGACTACGT
GATGATCTGCCATCATCTATGTGTTGTCGCTCGGTTGTATGGATGCTCTTGCTTGGGGTG
CTGATAACTGTATATTCTGTTGTGCTTCAAGTCCTTACTTTGGCGCCGCTGGTTGCCATA
GCTCTTTCATCGTTCAGGCTACGAGCAAACAACTATGGCAATGTTGGCAACGATGCTGCC
AATTCAGCAAAGCTCAAGGCATCCCTGCAGATTTTTTACTCTCTCACCCTGGCTCAGAGC
AATGCCTTCTACTTGTGGAAGATGATGGTCGTTTTGGAGAAGTGCTGTGTTTCTACTGTG
AGCAAGAAGTGCAGATTTGGGGAGTGGGGCATCGCCTTGGTGTGGGCATACCTTGAAGAA
ACCAAAACCATACCCATACTCGAGAGAGCGCCGCGGGGCAGAAACTTGGTCACCTTTGCA
GTTGGCTTGCTCGGCTCCGAATCGCTGCACGATCGTTGTTCTGCGCTTCGCATGCTGGAC
ACGTTCGTCGGCGACAAGGTGCCAGTAGCACCCAGCCTGCTGCTGCCTTGCAGGGGTCCC
CTTGAGAACCTCATGGAAGCCCTCGAGGTGGGCGACTGCGAGACCAGGGAGCGTGCCGCT
AGGATCGTTGCGGCTCTTGCTGCTGGCGATCATCTCCGCCGCATCGACCAGTTCCCCAGA
GCATTGCATCACATGGCTTCACTGCTTCAAGCCTCTGATTATCGGTTTCCCACAGCTACA
ACTGCTGCAACAGAAGAACCACGACAAGCAGCAGCAGCGAGCATTAGCAAGCGCGGGGGT
ATTGGACTGCTATACTTTACCATCCTATCTCGTATCAACTTGTTCAATATCTTTGAGAAA
GAGAAAAAGGACGAAGACACCTTACCACCCTCTGGCGGCGGACCAAAGCAGCTCATCTCT
CAAGGGCTGCTTATCGTCGAGAGGCTGGCTCTACACCGAGCAAACCGTGCCCACATGTGC
AACAACAACGTCCTGCTCTCAAAGCTCACAGCGCCCCTATGCTCCTCCCATGCTTTCTTC
CTCGACACCACCGCGGGCACGGCAGTACAGACTACAGAGTGGGTTTTGACATGCTAG

Peptide Sequence

PEP ID

Zm00001d031145_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:179585581:179594014:-1 gene:Zm00001d031145 transcript:Zm00001d031145_T002 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPSSTSASGAVGLGRRQPPNPIAAVGGLRRSDSSRWWWARLMEKNYSDAERFLARRPEER
LINDYLLLESAARKVATGLAYLLLTWSTVVLLGGFVSVLKLIDFWCLAAISTSFAVNLAD
LYEYTTGYFLAAGNVYIGLRDDLPSSMCCRSVVWMLLLGVLITVYSVVLQVLTLAPLVAI
ALSSFRLRANNYGNVGNDAANSAKLKASLQIFYSLTLAQSNAFYLWKMMVVLEKCCVSTV
SKKCRFGEWGIALVWAYLEETKTIPILERAPRGRNLVTFAVGLLGSESLHDRCSALRMLD
TFVGDKVPVAPSLLLPCRGPLENLMEALEVGDCETRERAARIVAALAAGDHLRRIDQFPR
ALHHMASLLQASDYRFPTATTAATEEPRQAAAASISKRGGIGLLYFTILSRINLFNIFEK
EKKDEDTLPPSGGGPKQLISQGLLIVERLALHRANRAHMCNNNVLLSKLTAPLCSSHAFF
LDTTAGTAVQTTEWVLTC

Transcript Sequence

Transcript ID

Zm00001d031145_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:179585581:179594014:-1 gene:Zm00001d031145 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATCAGATGCCGTCGTCCACGTCCGCCTCCGGCGCCGTAGGGCTAGGGCGGCGACAGCCTC
CCAATCCCATTGCAGCAGTAGGGGGGCTTAGAAGAAGCGATAGCAGCAGATGGTGGTGGG
CGAGATTAATGGAGAAGAACTACAGTGATGCTGAGAGATTTCTCGCAAGGAGGCCGGAAG
AGAGGCTGATCAACGATTACCTGCTGCTTGAGTCCGCCGCACGGAAGGTCGCCACCGGCC
TCGCGTACCTGTTGCTGACGTGGTCCACCGTCGTCCTCCTTGGTGGCTTCGTCTCCGTGC
TCAAGCTCATCGACTTTTGGTGTCTCGCTGCCATTAGCACGTCATTTGCAGTCAATCTAG
CAGATTTGTACGAGTACACGACTGGATATTTCCTGGCAGCGGGCAATGTGTACATTGGAC
TACGTGATGATCTGCCATCATCTATGTGTTGTCGCTCGGTTGTATGGATGCTCTTGCTTG
GGGTGCTGATAACTGTATATTCTGTTGTGCTTCAAGTCCTTACTTTGGCGCCGCTGGTTG
CCATAGCTCTTTCATCGTTCAGGCTACGAGCAAACAACTATGGCAATGTTGGCAACGATG
CTGCCAATTCAGCAAAGCTCAAGGCATCCCTGCAGATTTTTTACTCTCTCACCCTGGCTC
AGAGCAATGCCTTCTACTTGTGGAAGATGATGGTCGTTTTGGAGAAGTGCTGTGTTTCTA
CTGTGAGCAAGAAGTGCAGATTTGGGGAGTGGGGCATCGCCTTGGTGTGGGCATACCTTG
AAGAAACCAAAACCATACCCATACTCGAGAGAGCGCCGCGGGGCAGAAACTTGGTCACCT
TTGCAGTTGGCTTGCTCGGCTCCGAATCGCTGCACGATCGTTGTTCTGCGCTTCGCATGC
TGGACACGTTCGTCGGCGACAAGGTGCCAGTAGCACCCAGCCTGCTGCTGCCTTGCAGGG
GTCCCCTTGAGAACCTCATGGAAGCCCTCGAGGTGGGCGACTGCGAGACCAGGGAGCGTG
CCGCTAGGATCGTTGCGGCTCTTGCTGCTGGCGATCATCTCCGCCGCATCGACCAGTTCC
CCAGAGCATTGCATCACATGGCTTCACTGCTTCAAGCCTCTGATTATCGGTTTCCCACAG
CTACAACTGCTGCAACAGAAGAACCACGACAAGCAGCAGCAGCGAGCATTAGCAAGCGCG
GGGGTATTGGACTGCTATACTTTACCATCCTATCTCGTATCAACTTGTTCAATATCTTTG
AGAAAGAGAAAAAGGACGAAGACACCTTACCACCCTCTGGCGGCGGACCAAAGCAGCTCA
TCTCTCAAGGGCTGCTTATCGTCGAGAGGCTGGCTCTACACCGAGCAAACCGTGCCCACA
TGTGCAACAACAACGTCCTGCTCTCAAAGCTCACAGCGCCCCTATGCTCCTCCCATGCTT
TCTTCCTCGACACCACCGCGGGCACGGCAGTACAGACTACAGAGTGGGTTTTGACATGCT
AGCCACATCGCTGAGGATCATAACCAGGCTGGTTAGAGCTCCTGGAGAGGCCAGCAGAGG
GCTGCATGACGGGATCGCAAGCAACGCACAGGCGATCTCTAACCTGTCGAGGGTTTTGGA
GGAGGAGGACGACAACAATTCGTTTGGCCCAGCACTGAAGGCAGCTGCCGTTGACATCCT
AGCAGAACTGGCGTTGCCTTCGTCAGACAGGTCTGCCGCCTCGAGGTCGAGGCTGCTGGG
CAAGGCTGACATCATCAGGGGGCTGTGGTGCATCTTCCTTGTTCAAGTGGATGGTGGCGT
TGACGGCAGCAACATTCAGGGAGATGAGGAACAGCGACAGCAGGATAGCACACTGAGGAA
GAAAGCTAGGGAAGCACTGGCACATGCTGCCTGCAGAACTGCGTCATGTTGCTGGCCGGC
TTACTGACATGCTGGCTAAAAGTAAGGGCTCTCCAAGTCGAGTTAGGGCAGCAAGAACCC
TCGAGTGCTTGTGTTCACATATTTCTACAGAACATGGACAACCTCCAGGGAAGGACGATG
CGATTGAGATGCTGACAAAGGTTCTTCATCTGATTCTACTGGTCCCAAGCGAATCAAACA
AGCTGGAAACGGCGACGAGGAGCAGCAAGAAGAAGAAGAGGAATTCCTGGTGGCCCTGCT
ATCACTTGCCGTGGTCATATGTGACGGCATGGTCGATGAACATGGCTTCACCTGTGCTGC
CCCTAAAGACATGGTGTCTCTGGTGAGAAAGCTCAAGGACATAATACTACAGGCTAACAA
CAACAACAACAACAACACGTTCCAATGCCTGCGGACAGTGAAGCTTACCTGCCAGCTGGT
TGTTTCAATGGCACAGCTCAAGCCCATGTGCATCAAAGACTTCACGGAGCACGATTTCAT
GGACGTGCTATCTGAATCGTCTTTCAAGACATTGTCAGATCTCGATAACTGCCTCGTGTT
ATTTGAGGCCGATGATCGTTATCAGTATCAGGTGACGAAGACTGCAGATGAGCCACTGGT
TTCGCTTGTGAAGAAAGCTCAACAACTCTTCCACAAAAGCAACGACAAGAACCTGGTTGG
TAATGTGCTTGCCTAGTCAAGGGGAGTGTGAA