Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d031130_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:178917351:178919435:1 gene:Zm00001d031130 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pentatricopeptide repeat-containing protein

Sequence

ATGCACCGCCGCCAGCACCACGCACTCGCTGCCGCCAAGTCCCACGCCACGCTCCTCAAG
TCCGGCGCCTCCTCCCCCACGCCCTGGAACCAGCTCCTCACAGCGTACTCCGCCACTGGC
CTCGCCGCCGCGCGCCGGGTGTTCGACGAGATCCCCCACCCCGACGCGGCCTCCTGGAAC
TCCCTCCTTGCCGCGCACGTCGCGGCTGGAGCGCACCGGGACGCATGGCGCCTGCTTCGG
GCCATGCACGCGCGGGGGCTCGCCGCCAGCACCTTCGCCCTCGGCTCGGCGCTCCGCTCC
GCGGCCGCCGCGCGACGCCCTGAGCTCGGCGCCCAGCTGCAGTCATTTTCCGTCAGGTGC
GGCCTCGCTGATAACGTCTTCCCTGCGAGTGCGTTGCTCGATGTGTATGCGAAATGTGGC
CGCTTGGGCGATGCTCGCCGGGTGTTCGATGGAATGCCAGTGCGGAATATCGTTTCTTGG
AACGCGATCATTGCTGGGTATACGGACTCTCGGAAGCCGGCAGAAGCAATGGAGCTGTTT
CTTGAGATGCAGAGGGTGGGGTCGGTCCCGGATGGTACGACATTTGCTGTCTTACTCGCG
ACAATTGCTGGCCCAAGGTGGTATTCCTTGATGCGGCAGCTGCATGGCAAGATTGTGAAG
TATGGTTCTGCGTTGGGGTTGGTAGCGCTGAATGCAGCAATCACTGCATACTCACAGTGT
GATGCGCTTGCAGACTCTAGAAAGATTTTTGATGGAATTGAGAGCAGGGATCTGATATCA
TGGAATTCTATGCTAGGAGCCTACGCTTACCATGGGCTGGACGATGAGGCAATGAGATTC
TTTGTCAGGATGATGAGAGAGAGTGGAATCCAGCCTGACATGTATAGCTTTACAAGTGCC
ATAAGTGTTTGTTCGGAGCATGGGTGTGATGATCAGCAAGGGAGATCGATTCATAGTTTG
GTGATCAAGTTTGGGTTGGAAGGAGTCACACCTGTTTGCAATGCTATGATCGCCATGTAC
ACTAGGTTTGCTGATAACTGCATGATGGAGGATGCTTATAACTGCTTTAGTTCTTTGGTT
TTTAAGGATGCAGTCTCCTGGAACTCTATGCTAACTGGATATTCACATCACGGTTTGAGT
TCTGATGCTTTGAAATTCTTCAGATGCATGCGGGCAGAGAATATTAGAACAGATGAGTTT
GGGCTCTCTGCTGCTCTGAGGTCTTGCTCAGACCTTGCTGTACTTCGGCTAGGTAGACAA
GTACACAGTTTGGTCGTCCAATCTGGTTTTGCTTCCAATGACTTCGTTTCAAGTTCGCTG
ATCTTCATGTATTCTAAGTGCGGAGTGCTTGGTGACGCAAGAAAGTCCTTCGAAGAGGCA
GACAAGAGTAGCTCTGTGCCCTGGAACTCTATGATGTTTGGTTATGCTCAACATGGGCAG
GCACAGACTGTGACCGACCTCTTCAATGAGATGCTGGACCTTGAGGTTCCTTTGGATCAT
GTGACCTTTGTTGCCCTGATTACCGCCTACAGCCATGGTGGTCTTGTAGATGAAGGGTCA
GAAATTCTCAATACGATGGAAACTAGGTATAAAATTCCTATGCGAATGGAGCACTATGCA
TGTGGTGTTGATCTATATGGGAGGGCAGGACAGCTTGATAAAGCAAAAGAGCTTATTGAG
TCTATGCCATTTCAGCCAGATGCCATAGTTTGGATGACCCTTTTAGGTGCTTGCAGAATC
CATGGGAATATGGAACTAGCAAGCGATGTGGCAAGGCATTTATTTGTGGCGGAACCTCGA
CAGCACTCCACCTACGTTCTTCTCTCCAGCATGTATTCTGGTCTTGGTATGTGGAGTGAC
AGAGCAACAGTGCAGAAGGTAATGAGGAACAGGGCATTAAGCAAAATTCCTGGATGGAGC
TGGATTGAGGTGAAAAATGAGGTGCATTCCTTTAACGCAGATGATAGGTCACACCCAAGG
ATGGTTGAAATCTTTGATATGTTAAGAATGCTGCTTCAGGTTGCACCGAGGCTTTGCTCT
TCTGGAGGTGAAGAGATTCCCATGACAATATCCAGTGAAACATGA

Peptide Sequence

PEP ID

Zm00001d031130_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:178917351:178919435:1 gene:Zm00001d031130 transcript:Zm00001d031130_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pentatricopeptide repeat-containing protein

Sequence

MHRRQHHALAAAKSHATLLKSGASSPTPWNQLLTAYSATGLAAARRVFDEIPHPDAASWN
SLLAAHVAAGAHRDAWRLLRAMHARGLAASTFALGSALRSAAAARRPELGAQLQSFSVRC
GLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELF
LEMQRVGSVPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQC
DALADSRKIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSA
ISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLV
FKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQ
VHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQ
AQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYA
CGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPR
QHSTYVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVHSFNADDRSHPR
MVEIFDMLRMLLQVAPRLCSSGGEEIPMTISSET

Transcript Sequence

Transcript ID

Zm00001d031130_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:178917351:178919435:1 gene:Zm00001d031130 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative pentatricopeptide repeat-containing protein

Sequence

ATGCACCGCCGCCAGCACCACGCACTCGCTGCCGCCAAGTCCCACGCCACGCTCCTCAAG
TCCGGCGCCTCCTCCCCCACGCCCTGGAACCAGCTCCTCACAGCGTACTCCGCCACTGGC
CTCGCCGCCGCGCGCCGGGTGTTCGACGAGATCCCCCACCCCGACGCGGCCTCCTGGAAC
TCCCTCCTTGCCGCGCACGTCGCGGCTGGAGCGCACCGGGACGCATGGCGCCTGCTTCGG
GCCATGCACGCGCGGGGGCTCGCCGCCAGCACCTTCGCCCTCGGCTCGGCGCTCCGCTCC
GCGGCCGCCGCGCGACGCCCTGAGCTCGGCGCCCAGCTGCAGTCATTTTCCGTCAGGTGC
GGCCTCGCTGATAACGTCTTCCCTGCGAGTGCGTTGCTCGATGTGTATGCGAAATGTGGC
CGCTTGGGCGATGCTCGCCGGGTGTTCGATGGAATGCCAGTGCGGAATATCGTTTCTTGG
AACGCGATCATTGCTGGGTATACGGACTCTCGGAAGCCGGCAGAAGCAATGGAGCTGTTT
CTTGAGATGCAGAGGGTGGGGTCGGTCCCGGATGGTACGACATTTGCTGTCTTACTCGCG
ACAATTGCTGGCCCAAGGTGGTATTCCTTGATGCGGCAGCTGCATGGCAAGATTGTGAAG
TATGGTTCTGCGTTGGGGTTGGTAGCGCTGAATGCAGCAATCACTGCATACTCACAGTGT
GATGCGCTTGCAGACTCTAGAAAGATTTTTGATGGAATTGAGAGCAGGGATCTGATATCA
TGGAATTCTATGCTAGGAGCCTACGCTTACCATGGGCTGGACGATGAGGCAATGAGATTC
TTTGTCAGGATGATGAGAGAGAGTGGAATCCAGCCTGACATGTATAGCTTTACAAGTGCC
ATAAGTGTTTGTTCGGAGCATGGGTGTGATGATCAGCAAGGGAGATCGATTCATAGTTTG
GTGATCAAGTTTGGGTTGGAAGGAGTCACACCTGTTTGCAATGCTATGATCGCCATGTAC
ACTAGGTTTGCTGATAACTGCATGATGGAGGATGCTTATAACTGCTTTAGTTCTTTGGTT
TTTAAGGATGCAGTCTCCTGGAACTCTATGCTAACTGGATATTCACATCACGGTTTGAGT
TCTGATGCTTTGAAATTCTTCAGATGCATGCGGGCAGAGAATATTAGAACAGATGAGTTT
GGGCTCTCTGCTGCTCTGAGGTCTTGCTCAGACCTTGCTGTACTTCGGCTAGGTAGACAA
GTACACAGTTTGGTCGTCCAATCTGGTTTTGCTTCCAATGACTTCGTTTCAAGTTCGCTG
ATCTTCATGTATTCTAAGTGCGGAGTGCTTGGTGACGCAAGAAAGTCCTTCGAAGAGGCA
GACAAGAGTAGCTCTGTGCCCTGGAACTCTATGATGTTTGGTTATGCTCAACATGGGCAG
GCACAGACTGTGACCGACCTCTTCAATGAGATGCTGGACCTTGAGGTTCCTTTGGATCAT
GTGACCTTTGTTGCCCTGATTACCGCCTACAGCCATGGTGGTCTTGTAGATGAAGGGTCA
GAAATTCTCAATACGATGGAAACTAGGTATAAAATTCCTATGCGAATGGAGCACTATGCA
TGTGGTGTTGATCTATATGGGAGGGCAGGACAGCTTGATAAAGCAAAAGAGCTTATTGAG
TCTATGCCATTTCAGCCAGATGCCATAGTTTGGATGACCCTTTTAGGTGCTTGCAGAATC
CATGGGAATATGGAACTAGCAAGCGATGTGGCAAGGCATTTATTTGTGGCGGAACCTCGA
CAGCACTCCACCTACGTTCTTCTCTCCAGCATGTATTCTGGTCTTGGTATGTGGAGTGAC
AGAGCAACAGTGCAGAAGGTAATGAGGAACAGGGCATTAAGCAAAATTCCTGGATGGAGC
TGGATTGAGGTGAAAAATGAGGTGCATTCCTTTAACGCAGATGATAGGTCACACCCAAGG
ATGGTTGAAATCTTTGATATGTTAAGAATGCTGCTTCAGGTTGCACCGAGGCTTTGCTCT
TCTGGAGGTGAAGAGATTCCCATGACAATATCCAGTGAAACATGA