Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030981_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:171564539:171568092:1 gene:Zm00001d030981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat protein kinase family protein
Sequence

ATGTGTCCATGCCGTACTTGCCTAGCGTTGTGCTTGTGCATGGCCACGATCCTCCTCTTA
GGGCCATGCCAATGGGTAGGCACCGCCGCCGCAACGACAACAGCCAGCCAGGCGGTGACT
GTGACAGATACTGCCAGCAGTAGTGACCGAGAGGCGCTGCTGTGCATCAAGTCCTACCTG
TCGCATCGCAACGGCAGCGGCGGCGCCCTGGCTACATGGGGCAGCAACAACGGCTCGCTG
GACGTCTGCCGGTGGCAGGGCGTGCGGTGCAAGCGGCGGCAAGACAGCGGCGGCGGCGGC
GGCGCTCTCCGAGTCGTCACAGGCCTATCCCTCGAAGGAGAAGGCGTGGCCGGCCAGATC
CCGCCGTGTATCTCCAACCTCACCTACCTCACTCGGATCCACCTGCCATTCAACTCGCTC
GGCGGCGCGCTACCTCCGGAGATAGGCCGGCTCCGGAGGCTCCGGTACGTCAACCTCAGC
TCCAACGCCCTCACCGGCGCGATCCCGACCGAGCTCGCCTCGTGCTCGGCCCTCCGCGTC
GTGTCTCTCAAGAAAAACAACCTCAGCGGAGGCATCCCTGCTGCTCTCTTCAAAAACTGC
TATTCGATCCAGAAGGTCGATCTCCGCATGAACAACCTCGACGGCCCGATCCCTGATCTG
CTGCCGTACCATAGCTCTACTGATACTAGTAGTAGTCTGCAACTACTTGGCCTCACCCAG
AACAACCTCTCCGGCGAGATACCGTCTTCCGTTGGCAACCTCTCCTCGCTTGTTTACTTC
CTGGCTGCTCAGAACCTTCTGACCGGCAGCATCCCAGGTAGCCTGGCATCGTTAGCGAGC
ATCCAAGTCATTGATCTCACCTACAACAATCTGTCAGGCACCGTGCCCAGCTCCATCTTC
AACCTCTCCTCGCTTATATACCTGGGCTTGGGAGACAACGGTTTTGTAGGGGAGCTGCCG
GCGACGATGGGCAACCGTCTCCCAAACATCCAGGGTCTTATACTGTCGGCGAATAATTTC
TACGGAGAGATCCCCAAATCGATAGCAAATGCCACCAACCTTGTGGACATATACATGCAG
GAGAACTCGCTCGGCGGAGTCATCCCCTCCCTGGGAACCCTACGAAGCCTGCAGACCTTG
TTCCTGTACAACAACAAGAAGCTGGAAGCCGGGGACGACTGGGCGTTCCTCTCCTCCCTA
GCGAACTGCCCGCAGCTGGGTTTCTTGGTCTTGGACAGGAACAGGCTGCAGGGACCTCTT
CCCAGCTCAGTGGCCAACCTGTCACAAAACCTGAAAGAGTTTGTCCTTGGCTCAAACCTC
ATCACAGGTGCCATCCCATCTGGGATCGGCGACCTGGCTAACCTTTCCGTCCTCTACCTA
GACAACAACATGCTATCTGGGCACATACCTGCTTCCATTGGGAAGCTTCGCAGTATGTTT
GCTCTCAACTTGTCCAAGAACCGGCTGTCCGGAGAAATCCCAGCATCCATAGGCGACAAC
TGGGCTCAGTTGACCGAGCTTTACCTGCAAGAGAACAGCCTCAGTGGAGCCATACCAGCA
GGGCTAGCTGGATGCAGAAACCTGCTGGCACTGAACCTCTCGTCCAACGCCTTTTCTGGA
CCTATACCGGAAGGCCTCTTCGGTAGACTGGACCAGCTGAACTGGTACCTTGACCTGTCC
AAGAACCAGCTCGCAGGCTCCATCCCAGACGAATTCAGCAACATGATCAACCTCGAATCC
CTCAACATCTCCAGCAACAGCATCTCTGGTAAAATCCCCTCCACTCTCGGCTCGTGCGTG
CTCTTGCAGGCTCTTCGCCTGGAAGCCAACTCCCTGGACGGTCAAATCCCGTCGTCTCTT
GCCACCTTGAAAGGAATCAAGGAGCTCGACTTCTCTCGCAACAACTTGTCTGGTAAAATT
CCAGAGTTTCTGGAACAGTTCGATAGCTTGCAGTACCTGAATTTATCCTTCAACAATCTT
GACGGCCCTATTCCTACGCAAGGCGTCGTCTTTGGCAATGCCACAAGCAGGCTTTTCCTC
CAGGGGAACCCGAAACTGTGTGCAGAAACTATAGCAGTGCTAGGCCTCCCACTCTGCAGG
GCTCAAAACCCGTCTGCAAGGAACCGATTCCTGGTTCGGTTCTTGGCTGTTCTGTTGCCT
TGCGTAGTTGTGGTTTCCCTTCTGTCTGTCCTGTTCTTGAAGAGGTGGAGCAGAAAGCCG
CGTCCCTTCCACGAATCCTCCGAAGAGTCATTCAAGATGGTAACCTACAGTGACCTAAGC
ATGGCAACCAACGGATTTTCACCTGGCAGCCTGATTGGTTCGGGGCAGTCTAGCTCAGTC
TACAGAGGTTCGTTACCGTCGAAAACTGATGACGTCCATACGATGATTGCCGTCAAGGTA
TTCAAGCTCGGTCAGTCCAGTTCGTCGAAAAGCTTTCTAGCCGAGTGCAGAGCGCTAAGA
AACACCCGCCACCGCAATCTAGTGAAGGTGATCACCGCGTGCTCGACGTGCGATCCTTTC
GGTAACGAGTTCAAGGCTCTGGTTCTAGAATATGTGCCGAATGGCACCCTTGCTGACCAC
CTCCACGCCAAGTACCCCGGCTATGGTGATGGTGCTCGTCTAAGTTTAGGCGACAGGATT
GGCATAGCGGCTGATGTCGCTTCTGTTCTAGAGTACCTTCATGTCTGGAGTGCGCCTCCC
ATGGCTCACTGCGACATCAAACCAAGCAATATTCTCTTGGATGATGACAACGTTGCCCAT
GTCGGAGACTTTGGGCTGGCGCGGTTCCTCCAACATGCTTCTTCTGCTTGTGCTGGGGGC
CATCGCAACGCAACAAGCTCTGTTGGAGCAGCAGGATCCGTGGGCTACATACCTCCAGAG
TATGGAATGGGAAGCAGAATATCAACTGAGGGGGACGTATACAGCTACGGCATTGTTCTC
CTGGAAATGCTCACCGGCAAAAGCCCTACCGATGAATCGTTTCACGATGGCTTCACCCTA
CACAAATACGTCGAGGAAGCACTGCCACGGATCGGCGAGGTTCTGGACGCTGATCTCAGT
GAAGAGGTCGCAGATCTTACCAGTCGTACTCGATCGTCGCAGGAACGACGAGCCAGCAAC
ACTGAGGTGCACAAGTGCATTTTTCAGCTGCTAAACCTTGGATTACTGTGCTCCCAAGAA
GCGCCAAAGGATCGACCAAGCATACAGTATGTATACGCTGAGATAGTTCAAGTCAAGGAA
CACTTCGGTTCCTGTAGTGTAAAGGAAACGTGA

Peptide Sequence

PEP ID

Zm00001d030981_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:171564539:171568092:1 gene:Zm00001d030981 transcript:Zm00001d030981_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat protein kinase family protein
Sequence

MCPCRTCLALCLCMATILLLGPCQWVGTAAATTTASQAVTVTDTASSSDREALLCIKSYL
SHRNGSGGALATWGSNNGSLDVCRWQGVRCKRRQDSGGGGGALRVVTGLSLEGEGVAGQI
PPCISNLTYLTRIHLPFNSLGGALPPEIGRLRRLRYVNLSSNALTGAIPTELASCSALRV
VSLKKNNLSGGIPAALFKNCYSIQKVDLRMNNLDGPIPDLLPYHSSTDTSSSLQLLGLTQ
NNLSGEIPSSVGNLSSLVYFLAAQNLLTGSIPGSLASLASIQVIDLTYNNLSGTVPSSIF
NLSSLIYLGLGDNGFVGELPATMGNRLPNIQGLILSANNFYGEIPKSIANATNLVDIYMQ
ENSLGGVIPSLGTLRSLQTLFLYNNKKLEAGDDWAFLSSLANCPQLGFLVLDRNRLQGPL
PSSVANLSQNLKEFVLGSNLITGAIPSGIGDLANLSVLYLDNNMLSGHIPASIGKLRSMF
ALNLSKNRLSGEIPASIGDNWAQLTELYLQENSLSGAIPAGLAGCRNLLALNLSSNAFSG
PIPEGLFGRLDQLNWYLDLSKNQLAGSIPDEFSNMINLESLNISSNSISGKIPSTLGSCV
LLQALRLEANSLDGQIPSSLATLKGIKELDFSRNNLSGKIPEFLEQFDSLQYLNLSFNNL
DGPIPTQGVVFGNATSRLFLQGNPKLCAETIAVLGLPLCRAQNPSARNRFLVRFLAVLLP
CVVVVSLLSVLFLKRWSRKPRPFHESSEESFKMVTYSDLSMATNGFSPGSLIGSGQSSSV
YRGSLPSKTDDVHTMIAVKVFKLGQSSSSKSFLAECRALRNTRHRNLVKVITACSTCDPF
GNEFKALVLEYVPNGTLADHLHAKYPGYGDGARLSLGDRIGIAADVASVLEYLHVWSAPP
MAHCDIKPSNILLDDDNVAHVGDFGLARFLQHASSACAGGHRNATSSVGAAGSVGYIPPE
YGMGSRISTEGDVYSYGIVLLEMLTGKSPTDESFHDGFTLHKYVEEALPRIGEVLDADLS
EEVADLTSRTRSSQERRASNTEVHKCIFQLLNLGLLCSQEAPKDRPSIQYVYAEIVQVKE
HFGSCSVKET

Transcript Sequence

Transcript ID

Zm00001d030981_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:171564539:171568092:1 gene:Zm00001d030981 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat protein kinase family protein
Sequence

ACGCAAGAGCTTCTGCTAGCTAGCCATTTCGACCATGTGTCCATGCCGTACTTGCCTAGC
GTTGTGCTTGTGCATGGCCACGATCCTCCTCTTAGGGCCATGCCAATGGGTAGGCACCGC
CGCCGCAACGACAACAGCCAGCCAGGCGGTGACTGTGACAGATACTGCCAGCAGTAGTGA
CCGAGAGGCGCTGCTGTGCATCAAGTCCTACCTGTCGCATCGCAACGGCAGCGGCGGCGC
CCTGGCTACATGGGGCAGCAACAACGGCTCGCTGGACGTCTGCCGGTGGCAGGGCGTGCG
GTGCAAGCGGCGGCAAGACAGCGGCGGCGGCGGCGGCGCTCTCCGAGTCGTCACAGGCCT
ATCCCTCGAAGGAGAAGGCGTGGCCGGCCAGATCCCGCCGTGTATCTCCAACCTCACCTA
CCTCACTCGGATCCACCTGCCATTCAACTCGCTCGGCGGCGCGCTACCTCCGGAGATAGG
CCGGCTCCGGAGGCTCCGGTACGTCAACCTCAGCTCCAACGCCCTCACCGGCGCGATCCC
GACCGAGCTCGCCTCGTGCTCGGCCCTCCGCGTCGTGTCTCTCAAGAAAAACAACCTCAG
CGGAGGCATCCCTGCTGCTCTCTTCAAAAACTGCTATTCGATCCAGAAGGTCGATCTCCG
CATGAACAACCTCGACGGCCCGATCCCTGATCTGCTGCCGTACCATAGCTCTACTGATAC
TAGTAGTAGTCTGCAACTACTTGGCCTCACCCAGAACAACCTCTCCGGCGAGATACCGTC
TTCCGTTGGCAACCTCTCCTCGCTTGTTTACTTCCTGGCTGCTCAGAACCTTCTGACCGG
CAGCATCCCAGGTAGCCTGGCATCGTTAGCGAGCATCCAAGTCATTGATCTCACCTACAA
CAATCTGTCAGGCACCGTGCCCAGCTCCATCTTCAACCTCTCCTCGCTTATATACCTGGG
CTTGGGAGACAACGGTTTTGTAGGGGAGCTGCCGGCGACGATGGGCAACCGTCTCCCAAA
CATCCAGGGTCTTATACTGTCGGCGAATAATTTCTACGGAGAGATCCCCAAATCGATAGC
AAATGCCACCAACCTTGTGGACATATACATGCAGGAGAACTCGCTCGGCGGAGTCATCCC
CTCCCTGGGAACCCTACGAAGCCTGCAGACCTTGTTCCTGTACAACAACAAGAAGCTGGA
AGCCGGGGACGACTGGGCGTTCCTCTCCTCCCTAGCGAACTGCCCGCAGCTGGGTTTCTT
GGTCTTGGACAGGAACAGGCTGCAGGGACCTCTTCCCAGCTCAGTGGCCAACCTGTCACA
AAACCTGAAAGAGTTTGTCCTTGGCTCAAACCTCATCACAGGTGCCATCCCATCTGGGAT
CGGCGACCTGGCTAACCTTTCCGTCCTCTACCTAGACAACAACATGCTATCTGGGCACAT
ACCTGCTTCCATTGGGAAGCTTCGCAGTATGTTTGCTCTCAACTTGTCCAAGAACCGGCT
GTCCGGAGAAATCCCAGCATCCATAGGCGACAACTGGGCTCAGTTGACCGAGCTTTACCT
GCAAGAGAACAGCCTCAGTGGAGCCATACCAGCAGGGCTAGCTGGATGCAGAAACCTGCT
GGCACTGAACCTCTCGTCCAACGCCTTTTCTGGACCTATACCGGAAGGCCTCTTCGGTAG
ACTGGACCAGCTGAACTGGTACCTTGACCTGTCCAAGAACCAGCTCGCAGGCTCCATCCC
AGACGAATTCAGCAACATGATCAACCTCGAATCCCTCAACATCTCCAGCAACAGCATCTC
TGGTAAAATCCCCTCCACTCTCGGCTCGTGCGTGCTCTTGCAGGCTCTTCGCCTGGAAGC
CAACTCCCTGGACGGTCAAATCCCGTCGTCTCTTGCCACCTTGAAAGGAATCAAGGAGCT
CGACTTCTCTCGCAACAACTTGTCTGGTAAAATTCCAGAGTTTCTGGAACAGTTCGATAG
CTTGCAGTACCTGAATTTATCCTTCAACAATCTTGACGGCCCTATTCCTACGCAAGGCGT
CGTCTTTGGCAATGCCACAAGCAGGCTTTTCCTCCAGGGGAACCCGAAACTGTGTGCAGA
AACTATAGCAGTGCTAGGCCTCCCACTCTGCAGGGCTCAAAACCCGTCTGCAAGGAACCG
ATTCCTGGTTCGGTTCTTGGCTGTTCTGTTGCCTTGCGTAGTTGTGGTTTCCCTTCTGTC
TGTCCTGTTCTTGAAGAGGTGGAGCAGAAAGCCGCGTCCCTTCCACGAATCCTCCGAAGA
GTCATTCAAGATGGTAACCTACAGTGACCTAAGCATGGCAACCAACGGATTTTCACCTGG
CAGCCTGATTGGTTCGGGGCAGTCTAGCTCAGTCTACAGAGGTTCGTTACCGTCGAAAAC
TGATGACGTCCATACGATGATTGCCGTCAAGGTATTCAAGCTCGGTCAGTCCAGTTCGTC
GAAAAGCTTTCTAGCCGAGTGCAGAGCGCTAAGAAACACCCGCCACCGCAATCTAGTGAA
GGTGATCACCGCGTGCTCGACGTGCGATCCTTTCGGTAACGAGTTCAAGGCTCTGGTTCT
AGAATATGTGCCGAATGGCACCCTTGCTGACCACCTCCACGCCAAGTACCCCGGCTATGG
TGATGGTGCTCGTCTAAGTTTAGGCGACAGGATTGGCATAGCGGCTGATGTCGCTTCTGT
TCTAGAGTACCTTCATGTCTGGAGTGCGCCTCCCATGGCTCACTGCGACATCAAACCAAG
CAATATTCTCTTGGATGATGACAACGTTGCCCATGTCGGAGACTTTGGGCTGGCGCGGTT
CCTCCAACATGCTTCTTCTGCTTGTGCTGGGGGCCATCGCAACGCAACAAGCTCTGTTGG
AGCAGCAGGATCCGTGGGCTACATACCTCCAGAGTATGGAATGGGAAGCAGAATATCAAC
TGAGGGGGACGTATACAGCTACGGCATTGTTCTCCTGGAAATGCTCACCGGCAAAAGCCC
TACCGATGAATCGTTTCACGATGGCTTCACCCTACACAAATACGTCGAGGAAGCACTGCC
ACGGATCGGCGAGGTTCTGGACGCTGATCTCAGTGAAGAGGTCGCAGATCTTACCAGTCG
TACTCGATCGTCGCAGGAACGACGAGCCAGCAACACTGAGGTGCACAAGTGCATTTTTCA
GCTGCTAAACCTTGGATTACTGTGCTCCCAAGAAGCGCCAAAGGATCGACCAAGCATACA
GTATGTATACGCTGAGATAGTTCAAGTCAAGGAACACTTCGGTTCCTGTAGTGTAAAGGA
AACGTGACAGATTTTAGGTTCCCTTTGGAAAAGCAATGGATTAGAGCTGACTATGAATTA
CAATCCTACATGAATTGAGAATGCAGGAAAAAATTCCCACCTAGCCTTTAGCCTTTGGAT
GGTGTGCAGGAATTTGAATAAAGAGATAAAAAGTTAT