Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030953_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:1:168703913:168709500:1 gene:Zm00001d030953 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIM-transcription factor 4 description:Zinc ion binding protein

Sequence

ATGAGTTGGTTAAACAAAATTTTTAAGGGTTCAGTAAACAGAGTTTCAAGGGGTCACTAT
GATGGAGACTGGCATGAAGGTCATTCATCTGATCACACCAGAGATACTTACGATGACAGT
GATAATGAAGATATAGATCGTGCCATTGCATTATCGCTAGCTGAGGAAGATCATAATAAG
GGAAAGTCGGTGGCTATTGATACTGACTATAATCTGGAGGAAGATGAACAACTTGCACGG
GCTCTGCAGGAAAGCCTGAATGCAGAGTCTCCTCCTCGACAGAATGTTCCTATTGAGGAT
GTGCCAGTGCCTCAATGGAATATTCCTGTTGAGCGGGTGCCTCCTCGACAGTATGTTCCA
GCAAATGAACCAACCCCACATGTTTACCCACGGGGTGGATCCAGGATTTGTGCTGGATGC
CAAAACCCAATTGGCCATGGACGTTTCCTTAGTTGTATGGATTCAGTTTGGCATCCTCAA
TGCTTCAGATGTTTTGCTTGCAACAAACCCATATCAGAGTATGAGTTTGCTATGCATGAT
GATCAGCCATACCACAAATCCTGCTACAAAGAGTTTTTTCATCCGAAATGCGATGTTTGC
AACAACTTTATTCCAACAAATAGAGATGGCCTCATTGAATACCGAGCACATCCTTTCTGG
ATGCAGAAGTACTGTCCTTCCCATGAAGATGATGGCACTCCTCGGTGCTGCAGTTGTGAA
CGAATGGAGCCAAGGGAGATCAAGTACATAACATTAGATGATGGGAGGAAACTCTGCTTG
GAATGTCTCAATTCTGCAGTAATGGATTCTCCAGAATGTCAACATCTTTACATGGATATT
CAGGAATTTTTTGAAGGTTTGAACATGAAAGTAGAACAGCAAATTCCATTACTTTTGGTT
GAGAGGCAGGCTCTTAATGAAGCCTTGGAAGCCGAGAAAAATGGGCACCACCTACCGGAA
ACCAGAGGTCTATGCCTTTCTGAGGAGCAAGTTGTTAGAACGATCTTAAAAAGACCACAG
ATTGGACCAGGAAACAGAATCTTAGATATGATTATAGGACCATACAAGCTGTCTCGGCGG
TGTGAAGTGACTGCAATCCTTATATTATATGGTCTGCCAAGATTACAAACTGGTTCCATT
CTTGCCCATGAGATGATGCATGCATATCTTCGTCTCAAAGGATTCCGAAACCTTAGTATT
GAGGTTGAAGAAGGCATCTGCCAAGTTCTATCCCACCTGTGGTTAGAGTCGGAAATCATC
GCTGGTTCTAGTAGCAACGTTGCATCCAGTTCAGAAGCATCATCATCTTCGTCATCCTCA
GCTCCTACCTCTTCAAAGAAGGGTGCGAAGACCGAATTCGAGAAGAAGCTTGGGGCATTC
ATCAAGCACCAGATCGAAACGGATTCTTCCGAGGCATACGGAGGTGGTTTTAGAGCTGGC
TATCCGGCTGTTGAGCGCTATGGCTTGAAAAGAACCCTTGATCATATGAAGTTGACAGGG
TCTTTCCCATATTAA

Peptide Sequence

PEP ID

Zm00001d030953_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:1:168703913:168709500:1 gene:Zm00001d030953 transcript:Zm00001d030953_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIM-transcription factor 4 description:Zinc ion binding protein

Sequence

MSWLNKIFKGSVNRVSRGHYDGDWHEGHSSDHTRDTYDDSDNEDIDRAIALSLAEEDHNK
GKSVAIDTDYNLEEDEQLARALQESLNAESPPRQNVPIEDVPVPQWNIPVERVPPRQYVP
ANEPTPHVYPRGGSRICAGCQNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHD
DQPYHKSCYKEFFHPKCDVCNNFIPTNRDGLIEYRAHPFWMQKYCPSHEDDGTPRCCSCE
RMEPREIKYITLDDGRKLCLECLNSAVMDSPECQHLYMDIQEFFEGLNMKVEQQIPLLLV
ERQALNEALEAEKNGHHLPETRGLCLSEEQVVRTILKRPQIGPGNRILDMIIGPYKLSRR
CEVTAILILYGLPRLQTGSILAHEMMHAYLRLKGFRNLSIEVEEGICQVLSHLWLESEII
AGSSSNVASSSEASSSSSSSAPTSSKKGAKTEFEKKLGAFIKHQIETDSSEAYGGGFRAG
YPAVERYGLKRTLDHMKLTGSFPY

Transcript Sequence

Transcript ID

Zm00001d030953_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:168703913:168709500:1 gene:Zm00001d030953 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIM-transcription factor 4 description:Zinc ion binding protein

Sequence

AATCGCCAATCGCCAATCTCCTCTCCATCTCGACATCCGCAGGGCGTTCGACGAAATGCG
ACGCAAACGCCTTGCGGCGCGCGCCCATGTGGCCAGGCGTCTCCCCCCCGCACGCTCCTC
CTCATCCGGCCTCGCGAGCGCGCGAGGGAGACGTCGCTGTGCCAGCGCGAGGCGGACGTC
ACCTCACCTCCCCGCCCCGCGTAGCTTTTCTGACCCGGATGCTACGCTGCGTCTCCACTA
CTCCGCCTCCCGCCCTGCCGTCCATGTCACGCCTCGGCTCCTTCCTTTCGCCTCCCGACT
CCTGCCTGCTGCCCCTTGTCCTCTTCCCCACCTCCTCCGGAATCTGGCCGCGCACCTACT
CGTCGCCCTCTCGTTTTCCCGTCTCCGCTTTCTTTATCCTGCGGGCGGAGCGGGTAGGGT
GGGGCGGTCGTTGCTCTCGGATCAAGAGAAAGGGAGGAAAAAAAAACAGCGCTTTCTTTC
TGTGGCCGGCGGTTCGCCCGTCGCTCACTGGCTGAAGCGGCTGCACCCGCGCCCTCTTGC
TGTGTGGCCACTGGCCAAGCGGGACACGGAACTCGAGCTCCGTTTGGGGATTCCGGATCA
CTTCGAGGTCACGAGGTGTATGCCCTTTGCTAATACTGTAGTACAGAAACGGCTAAAGGG
ATTCTGATCATCACTTAAGCTCAAGATCATGAGTTGGTTAAACAAAATTTTTAAGGGTTC
AGTAAACAGAGTTTCAAGGGGTCACTATGATGGAGACTGGCATGAAGGTCATTCATCTGA
TCACACCAGAGATACTTACGATGACAGTGATAATGAAGATATAGATCGTGCCATTGCATT
ATCGCTAGCTGAGGAAGATCATAATAAGGGAAAGTCGGTGGCTATTGATACTGACTATAA
TCTGGAGGAAGATGAACAACTTGCACGGGCTCTGCAGGAAAGCCTGAATGCAGAGTCTCC
TCCTCGACAGAATGTTCCTATTGAGGATGTGCCAGTGCCTCAATGGAATATTCCTGTTGA
GCGGGTGCCTCCTCGACAGTATGTTCCAGCAAATGAACCAACCCCACATGTTTACCCACG
GGGTGGATCCAGGATTTGTGCTGGATGCCAAAACCCAATTGGCCATGGACGTTTCCTTAG
TTGTATGGATTCAGTTTGGCATCCTCAATGCTTCAGATGTTTTGCTTGCAACAAACCCAT
ATCAGAGTATGAGTTTGCTATGCATGATGATCAGCCATACCACAAATCCTGCTACAAAGA
GTTTTTTCATCCGAAATGCGATGTTTGCAACAACTTTATTCCAACAAATAGAGATGGCCT
CATTGAATACCGAGCACATCCTTTCTGGATGCAGAAGTACTGTCCTTCCCATGAAGATGA
TGGCACTCCTCGGTGCTGCAGTTGTGAACGAATGGAGCCAAGGGAGATCAAGTACATAAC
ATTAGATGATGGGAGGAAACTCTGCTTGGAATGTCTCAATTCTGCAGTAATGGATTCTCC
AGAATGTCAACATCTTTACATGGATATTCAGGAATTTTTTGAAGGTTTGAACATGAAAGT
AGAACAGCAAATTCCATTACTTTTGGTTGAGAGGCAGGCTCTTAATGAAGCCTTGGAAGC
CGAGAAAAATGGGCACCACCTACCGGAAACCAGAGGTCTATGCCTTTCTGAGGAGCAAGT
TGTTAGAACGATCTTAAAAAGACCACAGATTGGACCAGGAAACAGAATCTTAGATATGAT
TATAGGACCATACAAGCTGTCTCGGCGGTGTGAAGTGACTGCAATCCTTATATTATATGG
TCTGCCAAGATTACAAACTGGTTCCATTCTTGCCCATGAGATGATGCATGCATATCTTCG
TCTCAAAGGATTCCGAAACCTTAGTATTGAGGTTGAAGAAGGCATCTGCCAAGTTCTATC
CCACCTGTGGTTAGAGTCGGAAATCATCGCTGGTTCTAGTAGCAACGTTGCATCCAGTTC
AGAAGCATCATCATCTTCGTCATCCTCAGCTCCTACCTCTTCAAAGAAGGGTGCGAAGAC
CGAATTCGAGAAGAAGCTTGGGGCATTCATCAAGCACCAGATCGAAACGGATTCTTCCGA
GGCATACGGAGGTGGTTTTAGAGCTGGCTATCCGGCTGTTGAGCGCTATGGCTTGAAAAG
AACCCTTGATCATATGAAGTTGACAGGGTCTTTCCCATATTAAAGCAACAGAAGTAAAGG
AGGGGGCTTTCTTCCAGTTGTGAGGATACACTCCACATTGGAGGTTTTGGTTTGGGTTAT
ACATAACTGATATGCATACCAAACGAGGGGAATTGTCTGTAAATCAGGAGAACCCTCTGC
TGCGCGGAAACTTATTGCAAACTGTCTTTTTATAGGAAAACGATACATGCAAGTTTTCAG
ACAGGGAACTTGAGAGGATCATATGTAATTTTTGGGCACTTGTTTTTGACTCCTTTGGTT
ATCAAAAACAAGGCAACATAATAAGATTGAAATTTATC