Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030766_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:159018373:159022893:1 gene:Zm00001d030766 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGATAAACAGAGGAACACCAAGAATGGGGAAGTGGGGAACAATGTGTTTTGCAGAATG
ATTCTTGATCATATTGCTGGGGACTTATGTCTCAATGAGGAGAACGTGCCTTGCAATACT
CCAAGAAACTCCGTTCACTCCGCGTTTGGTGGCAGGACAGTTGCTTCTACTAGCGGCAGC
TTCAATACTGATTCGGTGAGCCCAGGCGAGTATGTCAGGGATCCTGGATCCCTACTGAGT
TTACAACCGTGGATTTTTAGAAGAAACGGCTCACAGAACTACAGGGAAAGTGTGCGCGCG
AGTGGTAAAGGCAAGAATCTGGTCGATGTCCTTGGAGAGGGTCAAGCTGTCGAAATCTCT
CCAAGGAGCCCTTGTCTTGGTTCTGGGCCTGGAAGAGGCTGTGGAGCTCTTAGGAGCAGA
AGATCTCGTAGGAATTTGATGAAGCCACTTGTGCCAATGGAAAACTCCTACGTTCCACAG
CTTTACAGTGAGAACTTCGAAATGGAAGAATGCACGTTTGCTCCAGCTCCCTCCCCAGCT
TCTACTAGGCCATTCGTTGTGACAGACGGTACAAGGATAATTAGTAAATCACGCTATGAG
CCAGTACCTCTGCCCTTTAATATTAGATTAGACGAGGAATGTAGAGGCACCTCATTGATG
CCAGGAAGTATGATTGGAATTGCTCCTCTACCTGAGCTGAAGAAACTCAAACATGAGGCC
AGAGATTTACACGATGCAAGGCTTGGTCTGTCTGGTTCTCAGCGAAGTAGCAAATCGCAT
GAACAAGCAGGTCTACGTGATCGACTCCTACTATTCTCTACTGGGGTGAGCATCGGTATT
CTGTCAAATAAGAAGGAATTTGATACATTGAAGGGCACACTGAAACAAATGGAGAACTTA
GTTCAGGATTTACAAGATGAGCTGGAGATGAAAGAGGGTTTAACTGTGAAAGAATTACTT
AATGAAACATCTATCGAACATGATGATGATAATAGCAAACTACACGGAGTTGATCCAGAG
CCAATGAGCAAAATTGAGGCTGAGCTTGAAGCTGAGCTAGCAAGGCTGGAACTGAATATC
ACTTCGATAAGTTTAGAAGAAGAAACATCTGAAATCAATGGGGCCGACGATGATTCCATT
GGTGACATTGTTTGCGGGGAACTGAAAGCTGATACGGTCCCTCGCGACCTCACAGAGTAC
AGCAGTGAATCTGACCATCGCAGGGACAGCAGGGAAAGCTCCCCAGGTTACACATGTGGA
GCCAACTGTCCTGTCTCGCCAAGAGATCTCAGCATCCGTCTTCACAAGGTGATCCAACAC
AGGCTCGAAGACCGAATCAAGGAGCTCGAGTCAGCAATCGTGCACGGACAGAAGCAGACG
CAACTGCAGATGATGGTGACTGACCAAATGGTCTCCGACCGAATACGCTCGAACAGCGAG
TCAGGTTCTTCTTCAGGCCAGGGAAGTCCCATTTTCATACAAGAAACCAGCTCGCTGGCA
GAACCGTACCGTCTAAACCTATCTGGAGACGCGCTCGAAGCTTACGATGAAGCTTACGAA
GAGTTCATGAGGATCGCGGACTCCCCTTACACCACAAGTCCAAACGGGAAGCCACAGGCA
ACCGAAGATTGCTTGGCAGACCGTGGTCTAGTCTGGGGAATGGAGGACAGCTCTAGGAAG
CTGAGAGAAGTGCCCACCTGGGAGAGAGCTCTAAGGAGTGCAGATCCTAGCAGAGATCAC
GAGCGCGATAGGGATGAGTCAGGTGGCGACGACGACGATGACGACTGTGAAGTGCTGATC
CGGCAGATCGTAGAGAGAACTAGACAAGGTTCACATGTACTCGTTAACGCCCAGAAACTT
CTGTTTTCTGTGGACCAATAG

Peptide Sequence

PEP ID

Zm00001d030766_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:159018373:159022893:1 gene:Zm00001d030766 transcript:Zm00001d030766_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MDKQRNTKNGEVGNNVFCRMILDHIAGDLCLNEENVPCNTPRNSVHSAFGGRTVASTSGS
FNTDSVSPGEYVRDPGSLLSLQPWIFRRNGSQNYRESVRASGKGKNLVDVLGEGQAVEIS
PRSPCLGSGPGRGCGALRSRRSRRNLMKPLVPMENSYVPQLYSENFEMEECTFAPAPSPA
STRPFVVTDGTRIISKSRYEPVPLPFNIRLDEECRGTSLMPGSMIGIAPLPELKKLKHEA
RDLHDARLGLSGSQRSSKSHEQAGLRDRLLLFSTGVSIGILSNKKEFDTLKGTLKQMENL
VQDLQDELEMKEGLTVKELLNETSIEHDDDNSKLHGVDPEPMSKIEAELEAELARLELNI
TSISLEEETSEINGADDDSIGDIVCGELKADTVPRDLTEYSSESDHRRDSRESSPGYTCG
ANCPVSPRDLSIRLHKVIQHRLEDRIKELESAIVHGQKQTQLQMMVTDQMVSDRIRSNSE
SGSSSGQGSPIFIQETSSLAEPYRLNLSGDALEAYDEAYEEFMRIADSPYTTSPNGKPQA
TEDCLADRGLVWGMEDSSRKLREVPTWERALRSADPSRDHERDRDESGGDDDDDDCEVLI
RQIVERTRQGSHVLVNAQKLLFSVDQ

Transcript Sequence

Transcript ID

Zm00001d030766_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:159018373:159022893:1 gene:Zm00001d030766 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GTATTTGGTGGTTTGGCTCCTCGGGATGTTCTTCCTGTCCCCTCCGGACCAAGAGTCCAA
AACCCAAACCCAAGCACCCAAATCCGACCCCAAAATGCCTGCTTCTCAGTGATGGGATGA
CGGATGCTCCCCTCCTGCTGTAGCCCCAGCTCGCGCCGCCTCGCTTTCTCCCTTCGCGAC
GCCGGCATTTCGTGGCCGGCGGCGCCGCCTTATCCTCTGCCATTCTTGTGGGCAAGATAA
GCAGCGGGTTGTTTTTCTTTACCGTTGTTTCTGAAGGTTTCGGGGCCAGTTCAGCCGGAT
CCCGGCTCTTCGGACGCCGCCGCTCCCTCGGCCTGGTGGAGCTGGTGGAGCGGAGGGGAG
GGGCGATCCATACGGAGGTGGCGGTTCCATTTCTTGTTTTCCTGATTGCCCAAGCAACTG
TGGACCTGAACAGACTTCTGTGGTGCTGTTGAAGAATTAGTGCCACTCTCCCGATGGATA
AACAGAGGAACACCAAGAATGGGGAAGTGGGGAACAATGTGTTTTGCAGAATGATTCTTG
ATCATATTGCTGGGGACTTATGTCTCAATGAGGAGAACGTGCCTTGCAATACTCCAAGAA
ACTCCGTTCACTCCGCGTTTGGTGGCAGGACAGTTGCTTCTACTAGCGGCAGCTTCAATA
CTGATTCGGTGAGCCCAGGCGAGTATGTCAGGGATCCTGGATCCCTACTGAGTTTACAAC
CGTGGATTTTTAGAAGAAACGGCTCACAGAACTACAGGGAAAGTGTGCGCGCGAGTGGTA
AAGGCAAGAATCTGGTCGATGTCCTTGGAGAGGGTCAAGCTGTCGAAATCTCTCCAAGGA
GCCCTTGTCTTGGTTCTGGGCCTGGAAGAGGCTGTGGAGCTCTTAGGAGCAGAAGATCTC
GTAGGAATTTGATGAAGCCACTTGTGCCAATGGAAAACTCCTACGTTCCACAGCTTTACA
GTGAGAACTTCGAAATGGAAGAATGCACGTTTGCTCCAGCTCCCTCCCCAGCTTCTACTA
GGCCATTCGTTGTGACAGACGGTACAAGGATAATTAGTAAATCACGCTATGAGCCAGTAC
CTCTGCCCTTTAATATTAGATTAGACGAGGAATGTAGAGGCACCTCATTGATGCCAGGAA
GTATGATTGGAATTGCTCCTCTACCTGAGCTGAAGAAACTCAAACATGAGGCCAGAGATT
TACACGATGCAAGGCTTGGTCTGTCTGGTTCTCAGCGAAGTAGCAAATCGCATGAACAAG
CAGGTCTACGTGATCGACTCCTACTATTCTCTACTGGGGTGAGCATCGGTATTCTGTCAA
ATAAGAAGGAATTTGATACATTGAAGGGCACACTGAAACAAATGGAGAACTTAGTTCAGG
ATTTACAAGATGAGCTGGAGATGAAAGAGGGTTTAACTGTGAAAGAATTACTTAATGAAA
CATCTATCGAACATGATGATGATAATAGCAAACTACACGGAGTTGATCCAGAGCCAATGA
GCAAAATTGAGGCTGAGCTTGAAGCTGAGCTAGCAAGGCTGGAACTGAATATCACTTCGA
TAAGTTTAGAAGAAGAAACATCTGAAATCAATGGGGCCGACGATGATTCCATTGGTGACA
TTGTTTGCGGGGAACTGAAAGCTGATACGGTCCCTCGCGACCTCACAGAGTACAGCAGTG
AATCTGACCATCGCAGGGACAGCAGGGAAAGCTCCCCAGGTTACACATGTGGAGCCAACT
GTCCTGTCTCGCCAAGAGATCTCAGCATCCGTCTTCACAAGGTGATCCAACACAGGCTCG
AAGACCGAATCAAGGAGCTCGAGTCAGCAATCGTGCACGGACAGAAGCAGACGCAACTGC
AGATGATGGTGACTGACCAAATGGTCTCCGACCGAATACGCTCGAACAGCGAGTCAGGTT
CTTCTTCAGGCCAGGGAAGTCCCATTTTCATACAAGAAACCAGCTCGCTGGCAGAACCGT
ACCGTCTAAACCTATCTGGAGACGCGCTCGAAGCTTACGATGAAGCTTACGAAGAGTTCA
TGAGGATCGCGGACTCCCCTTACACCACAAGTCCAAACGGGAAGCCACAGGCAACCGAAG
ATTGCTTGGCAGACCGTGGTCTAGTCTGGGGAATGGAGGACAGCTCTAGGAAGCTGAGAG
AAGTGCCCACCTGGGAGAGAGCTCTAAGGAGTGCAGATCCTAGCAGAGATCACGAGCGCG
ATAGGGATGAGTCAGGTGGCGACGACGACGATGACGACTGTGAAGTGCTGATCCGGCAGA
TCGTAGAGAGAACTAGACAAGGTTCACATGTACTCGTTAACGCCCAGAAACTTCTGTTTT
CTGTGGACCAATAGTCCACTGCACTATACACCATTGCTTTTTGAGAGATATATAGCTTGT
ATGTAGTGTCGAATTATTGTTGAGAAAAAAGGGAATTGTTGATTGTTTTGAGGCTTC