Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030659_T030
CDS Infomation

cds chromosome:B73_RefGen_v4:1:151469468:151472170:1 gene:Zm00001d030659 gene_biotype:protein_coding transcript_biotype:protein_coding description:modifier of snc1
Sequence

ATGAAGGAGTTGGCTGCAGAACGTGCAAAAAAGTTGAAAGCTGAGGAAGAGGAACGGATA
AAGAACCAAAAAGCAAAAGCGCTCGCAAAGTTGGAAGAATTGAACAGGCGATCATCAGTA
CTTCAGAAGAAATCAAATGATATAAAAGTAGAAACTTATGATGCACATGATAAGCAACAT
GCTGGACTTGATGTGACTGCTAAACTTGACACTTCAACTGAACCACATGATGTTATTGCG
CCTGATAGGCTTACTGATCTTCTGCCTCCTAATGATCCCAATCATACTATGGTTCATATA
CAGGCCCAGTCTACAGCACAATCACATGCTTTAGATGGTGGCAAAGACCCTGATGCTCAT
GCAACCTCGTCTTTGGTCAAGAACACTCACAGCAACATGGAGCCTGTTGTGCAGAAGAGT
ATCTCGCAGTTGCATGACATCACTGTGGTAAAGGCCAAGCAAGGGTACAGGAAAAGACAT
GTGTCAGAAGAGAAAATTTCTGATGAGAAGGCAAGTGCTTCAATAACCACTAGAAATATT
ACGAAAAATGTTGATGTTCTCATCGACACAGTGACGGCTGTTGTTGCACCACATGATGAT
CCACCTACTCAGAACAAGAAGGGAACCCGACATTTGAGAAGTAAGAAAAAGTTAGATGAT
GCTCCAGTTACTTCTAAACATCCACCTGTGGTGTTGAATGAGCCGAATACAGTGAAAGTC
TCTACCGAGCCAAAGACACATACTGGTGGTGTTATCATCAGCAGCTCTATTGTTCCCACT
GAAGGTACTATTGTAACTGTTGGAAGTATAACTGTTGGTGGAATTTCACTTAAACCTATG
AATCAGGAGCGGGTTAAATCACCAGATGGAACAAATAATACTGAAAGTAGCCAACCAAGA
CCTCAGCAAACGAGAAAATCTGGAAAGCATCAGCATGTTCTTCGGCCTGTTGAGAAGCCA
CATGGGAATGATGGTATCTTGTGTGCACCAGTTAAGCCACCAGTGCCGAATGAGCACTCT
GATGGAGCCATGCCGACTGCAGCAGTAGCTGACCTCACTAAACCAGTAGGGAAAGCCATA
AATGATGGGGAGAATGTGACAAGAACAAAGAGGGCTGAAATGGAAAGATACGTTCCTAAG
CCTATGTCCAAAGAACTGCAACAACAAAATCCAAGTGATGATAAGGAAGCAGTTGATAAG
CCCAGTGGTGCTAAATCACATCCTGCAGCCGAACCCAAGAAAACTAGCAAAGCACATGGG
GGTAAATCTAATCCTTCTTGGCGCAAGAGGAATCCAGATGAATCAGCTTTGGTGGCACCA
AATTCTGTTGAGCAAGCAGACGTCTCTTATGAATCAAAGGAGGTTCAGAACTTCACCTAT
CAGAAGCAGCCTGTTGAACTTGGCAAGCAAGATACACAGTTAAAATTCAGTGTAGATGCT
GCTGCTGAAAATAGCTCAGCTCCAGTTCAAACAGTTCCGCTATCTGTCGGTGGCGCAAAA
CAACATAGTGCAGCTAACAGACAAAGGCGACAGCATGTTAAGGCTCAAAGAAATGAAGCA
AGTGGCTACTCAAATGAGAGCAAAGGTAGCGAGGGCAAGAATGATGTTGTCTATCAATCA
GCAACACCCGTCATGGATTCGAACTCATCCAATCACAGGAATGTGCCAAGATCTGATGTG
AAAAACAGCGGCGTAGTTTCACACTCTAGAGCCTGGAAGCCGAAAACCAATTCCCATCCT
CAGGACAGCTCAGACGGCAAGATTGCTGTTGACGGGCAAGTGGATTCCCATGGTGGTAGG
CTTGAGATGAATACGTCCAAAGGATCTGATACAATTACCCATCTAGTGACCAGTAGTGAA
CCGACGAAAAGGAGTGATGGCAAAGAGGTCTCACACAGCAAACATGAGAACCTGGCACGG
GAAGATGGTAACCAGAAGGGTGAGACTGAACAGGAGCAGGCTAATCCTACACTACGTCGC
CAAGGCCAGCCCAATGCAAGGTACCACAGGGGAGGTGGGTCACACAGGGGAAGGGGGGGT
TATGACACTGGGAGGCCAAACCATGTCACAAATGTGGAGAGGCGGAAGGGTGGCAGCCAT
CTTGAATACCAGCCAGTCGGACCCCAAAACAAAGCTGCAGACTTCCAACAGAGCCTGGGC
ATGGAAGAACGAACCGAGGGGCCTCCTGCTTCTGGACAAGCGTTCAGGCAGCGTGGACAC
AACAGGGGGCTACGCCCAGCAGGCCGCTTTGTCCAGCGAAACCCTGCTTCTACGCCTACC
ACTAATTCTCACCAAAATGAATAA

Peptide Sequence

PEP ID

Zm00001d030659_P030
PEP Infomation

pep chromosome:B73_RefGen_v4:1:151469468:151472170:1 gene:Zm00001d030659 transcript:Zm00001d030659_T030 gene_biotype:protein_coding transcript_biotype:protein_coding description:modifier of snc1
Sequence

MKELAAERAKKLKAEEEERIKNQKAKALAKLEELNRRSSVLQKKSNDIKVETYDAHDKQH
AGLDVTAKLDTSTEPHDVIAPDRLTDLLPPNDPNHTMVHIQAQSTAQSHALDGGKDPDAH
ATSSLVKNTHSNMEPVVQKSISQLHDITVVKAKQGYRKRHVSEEKISDEKASASITTRNI
TKNVDVLIDTVTAVVAPHDDPPTQNKKGTRHLRSKKKLDDAPVTSKHPPVVLNEPNTVKV
STEPKTHTGGVIISSSIVPTEGTIVTVGSITVGGISLKPMNQERVKSPDGTNNTESSQPR
PQQTRKSGKHQHVLRPVEKPHGNDGILCAPVKPPVPNEHSDGAMPTAAVADLTKPVGKAI
NDGENVTRTKRAEMERYVPKPMSKELQQQNPSDDKEAVDKPSGAKSHPAAEPKKTSKAHG
GKSNPSWRKRNPDESALVAPNSVEQADVSYESKEVQNFTYQKQPVELGKQDTQLKFSVDA
AAENSSAPVQTVPLSVGGAKQHSAANRQRRQHVKAQRNEASGYSNESKGSEGKNDVVYQS
ATPVMDSNSSNHRNVPRSDVKNSGVVSHSRAWKPKTNSHPQDSSDGKIAVDGQVDSHGGR
LEMNTSKGSDTITHLVTSSEPTKRSDGKEVSHSKHENLAREDGNQKGETEQEQANPTLRR
QGQPNARYHRGGGSHRGRGGYDTGRPNHVTNVERRKGGSHLEYQPVGPQNKAADFQQSLG
MEERTEGPPASGQAFRQRGHNRGLRPAGRFVQRNPASTPTTNSHQNE

Transcript Sequence

Transcript ID

Zm00001d030659_T030
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:151469468:151472170:1 gene:Zm00001d030659 gene_biotype:protein_coding transcript_biotype:protein_coding description:modifier of snc1
Sequence

TTTTGCAATATGTAGAACAAAAAACAAAGCAGGATGCAGCATCAAATGGTCAAAACAGTC
AGCGTGCAAAAATGAAGGAGTTGGCTGCAGAACGTGCAAAAAAGTTGAAAGCTGAGGAAG
AGGAACGGATAAAGAACCAAAAAGCAAAAGCGCTCGCAAAGTTGGAAGAATTGAACAGGC
GATCATCAGTACTTCAGAAGAAATCAAATGATATAAAAGTAGAAACTTATGATGCACATG
ATAAGCAACATGCTGGACTTGATGTGACTGCTAAACTTGACACTTCAACTGAACCACATG
ATGTTATTGCGCCTGATAGGCTTACTGATCTTCTGCCTCCTAATGATCCCAATCATACTA
TGGTTCATATACAGGCCCAGTCTACAGCACAATCACATGCTTTAGATGGTGGCAAAGACC
CTGATGCTCATGCAACCTCGTCTTTGGTCAAGAACACTCACAGCAACATGGAGCCTGTTG
TGCAGAAGAGTATCTCGCAGTTGCATGACATCACTGTGGTAAAGGCCAAGCAAGGGTACA
GGAAAAGACATGTGTCAGAAGAGAAAATTTCTGATGAGAAGGCAAGTGCTTCAATAACCA
CTAGAAATATTACGAAAAATGTTGATGTTCTCATCGACACAGTGACGGCTGTTGTTGCAC
CACATGATGATCCACCTACTCAGAACAAGAAGGGAACCCGACATTTGAGAAGTAAGAAAA
AGTTAGATGATGCTCCAGTTACTTCTAAACATCCACCTGTGGTGTTGAATGAGCCGAATA
CAGTGAAAGTCTCTACCGAGCCAAAGACACATACTGGTGGTGTTATCATCAGCAGCTCTA
TTGTTCCCACTGAAGGTACTATTGTAACTGTTGGAAGTATAACTGTTGGTGGAATTTCAC
TTAAACCTATGAATCAGGAGCGGGTTAAATCACCAGATGGAACAAATAATACTGAAAGTA
GCCAACCAAGACCTCAGCAAACGAGAAAATCTGGAAAGCATCAGCATGTTCTTCGGCCTG
TTGAGAAGCCACATGGGAATGATGGTATCTTGTGTGCACCAGTTAAGCCACCAGTGCCGA
ATGAGCACTCTGATGGAGCCATGCCGACTGCAGCAGTAGCTGACCTCACTAAACCAGTAG
GGAAAGCCATAAATGATGGGGAGAATGTGACAAGAACAAAGAGGGCTGAAATGGAAAGAT
ACGTTCCTAAGCCTATGTCCAAAGAACTGCAACAACAAAATCCAAGTGATGATAAGGAAG
CAGTTGATAAGCCCAGTGGTGCTAAATCACATCCTGCAGCCGAACCCAAGAAAACTAGCA
AAGCACATGGGGGTAAATCTAATCCTTCTTGGCGCAAGAGGAATCCAGATGAATCAGCTT
TGGTGGCACCAAATTCTGTTGAGCAAGCAGACGTCTCTTATGAATCAAAGGAGGTTCAGA
ACTTCACCTATCAGAAGCAGCCTGTTGAACTTGGCAAGCAAGATACACAGTTAAAATTCA
GTGTAGATGCTGCTGCTGAAAATAGCTCAGCTCCAGTTCAAACAGTTCCGCTATCTGTCG
GTGGCGCAAAACAACATAGTGCAGCTAACAGACAAAGGCGACAGCATGTTAAGGCTCAAA
GAAATGAAGCAAGTGGCTACTCAAATGAGAGCAAAGGTAGCGAGGGCAAGAATGATGTTG
TCTATCAATCAGCAACACCCGTCATGGATTCGAACTCATCCAATCACAGGAATGTGCCAA
GATCTGATGTGAAAAACAGCGGCGTAGTTTCACACTCTAGAGCCTGGAAGCCGAAAACCA
ATTCCCATCCTCAGGACAGCTCAGACGGCAAGATTGCTGTTGACGGGCAAGTGGATTCCC
ATGGTGGTAGGCTTGAGATGAATACGTCCAAAGGATCTGATACAATTACCCATCTAGTGA
CCAGTAGTGAACCGACGAAAAGGAGTGATGGCAAAGAGGTCTCACACAGCAAACATGAGA
ACCTGGCACGGGAAGATGGTAACCAGAAGGGTGAGACTGAACAGGAGCAGGCTAATCCTA
CACTACGTCGCCAAGGCCAGCCCAATGCAAGGTACCACAGGGGAGGTGGGTCACACAGGG
GAAGGGGGGGTTATGACACTGGGAGGCCAAACCATGTCACAAATGTGGAGAGGCGGAAGG
GTGGCAGCCATCTTGAATACCAGCCAGTCGGACCCCAAAACAAAGCTGCAGACTTCCAAC
AGAGCCTGGGCATGGAAGAACGAACCGAGGGGCCTCCTGCTTCTGGACAAGCGTTCAGGC
AGCGTGGACACAACAGGGGGCTACGCCCAGCAGGCCGCTTTGTCCAGCGAAACCCTGCTT
CTACGCCTACCACTAATTCTCACCAAAATGAATAATCTTCCGCGGCTGCCACATCCACTG
AGCTTCAGGAACTCGCGCTTGTGGTGGTGTTTCACAACAGATAGGTTAGCAGGTTTGGAT
GCGCGGCAGGTGTCCTTCTACGACTAAACTCTACTGGTGGTGAGCATTAGGATCCTGTAA
TGATAATAGTCTTTGTCCCAAGGGCACCTGGACCCT