Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030656_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:1:151221339:151225730:1 gene:Zm00001d030656 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear1 description: rotten ear1
Sequence

ATGGCGGTTCGCCAATGGGATGTTCGCAATTGTCTTGTCGTTTGGCCTTTTACTCACTGC
CCTCAGGAGCAGGAAGGCACGATCATGGCGCTATGGGACAGGCTGCGTGGCTTCATCGCT
GACTATGGTGTTCCACTGATGGTGCTAGTGTGGACTGGAGTGTCTTACATACCTTATGGA
AATGTACCAAAAGGAATTCCGCGGCGCCTTTTTAGCCCTAATCCATGGTCCCCTGGCGCA
TACGACAATTGGACAGTCGTCAAGGACATGACACAGGTTCCACTCCTCTATATCCTTGGT
GCATTCATACCAGCAACGATGATCGCTGTTCTCTACTACTTCGATCACAGCGTTGCGTCT
CAGCTTGCTCAGCAGAAAGAGTTCAACTTGAGGAAGCCTCCATCCTTCCACTACGATTTG
CTTCTCTTAGGTTTCCTGACGTTAATGTGTGGCCTTATTGGTATCCCTCCATCAAATGGT
GTCATTCCACAATCACCCATGCATACGAAGAGTTTGGCTACTCTCAAGCACCAGATCCTT
CGTAACCGGCTAGTAGCCACCGCACGGAAGGGCATGAGCCAGAATGCAAGCCTGAGCCAA
CTGTATGGCAGCATGCAGGATGCTTATCAGCAGATGCAGACACCACTGGTTTATCAGCAA
CAGTCTGTCAGAAGAGGCTTAAATGAGCTCAAGGACTCAACAGTCCAGCTAGCTTCGAGT
ATGGGTAACATTGATGCACCAGTTGATGAGACAGTCTTTGACATAGAGAAAGAAATTGAT
GATCTGCTGCCCATCGAGGTCAAGGAGCAGCGTTTGAGCAACCTTCTACAGGCTTCGATG
GTGGTGGGCTGTGTCGCTGCTATGCCCCTGCTCAAGAAGATCCCTACGTCTGTCCTCTGG
GGCTATTTTGCCTTCATGGCCATTGAGAGCTTGCCTGGTAACCAGTTTTGGGAGAGGATC
TTGCTCCTCTTCACTGCTCCCAGCAGAAGATACAAGGTGCTTGAAGAGTACCACACGACG
TTCGTCGAGACAGTGCCATTCAAGACAATAGCCATGTTCACAGTGTTCCAGACAGCTTAC
CTGTTGGTCTGCTTTGGAATCACATGGATTCCAATAGCCGGAGTTCTTTTCCCTCTCATG
ATCATGCTCCTGGTTCCAGTCAGGCAGTACATCCTCCCTAAGCTCTTCAAAGGTGCACAT
CTAACTGACCTGGATGCAGCTGAATACGAGGAATCACCAGCTATACCATTCAGCCTTGCT
GCGCAAGACATCGATGTCGCATTGGGACGCAGCCAGAGTGCAGAAATCCTAGACGACATG
GTCACGAGAAGCCGGGGTGAGATCAAACGCCTGAACAGCCCGAAGATCACCAGCTCAGGT
GGCACGCCTGTGGCAGAACTGAAAGGCATCCGCAGCCCATCCATTTCTGAAAAAGCATAC
AGCCCTCGTCTCACTGAGCTCCAGCATGAGCGCAGCCCTCTGGACGCCATCCAAGTTGGG
TGA

Peptide Sequence

PEP ID

Zm00001d030656_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:1:151221339:151225730:1 gene:Zm00001d030656 transcript:Zm00001d030656_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear1 description: rotten ear1
Sequence

MAVRQWDVRNCLVVWPFTHCPQEQEGTIMALWDRLRGFIADYGVPLMVLVWTGVSYIPYG
NVPKGIPRRLFSPNPWSPGAYDNWTVVKDMTQVPLLYILGAFIPATMIAVLYYFDHSVAS
QLAQQKEFNLRKPPSFHYDLLLLGFLTLMCGLIGIPPSNGVIPQSPMHTKSLATLKHQIL
RNRLVATARKGMSQNASLSQLYGSMQDAYQQMQTPLVYQQQSVRRGLNELKDSTVQLASS
MGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQASMVVGCVAAMPLLKKIPTSVLW
GYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETVPFKTIAMFTVFQTAY
LLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLDAAEYEESPAIPFSLA
AQDIDVALGRSQSAEILDDMVTRSRGEIKRLNSPKITSSGGTPVAELKGIRSPSISEKAY
SPRLTELQHERSPLDAIQVG

Transcript Sequence

Transcript ID

Zm00001d030656_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:151221339:151225730:1 gene:Zm00001d030656 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear1 description: rotten ear1
Sequence

TAGCTCTTCCCTCTGCTGCTCTCTCTGAGCCTGGCCCTTGCCCTCCTCTCCCTCCGGGAA
CCAGCCCTGCTCTCTATGCTCCTCTTCCATTCATAGCCTCGGCCTTCGTCTTCCTCCATG
GATCCGCGCTAAATGCATTGCGAGGTTCCAAACTGGTAGCACTTCTCCCTGCTCCATCTG
CCGCAAGATGTAAGCACGGCCTCACGCCCTCACTTGACACTCCGACTGGCCATCCAGAAT
ATACCTTCAGATCTTCCTGTCTGCGAAAAGCGACGCCCTTTTGGCCCGGGCAATGGAGGA
GAGCTTCGTGCCCTTGCGGGGCATCAAGGACGACCTCCACGGGAGGCTCGCCTGCTACAA
GCAGGACTGGACCGGAGGGTTCCGTGCCGGTATCAGGATCCTGGCGCCTACCACTTACAT
ATTCTTCGCGTCCGCGATACCGGTGATATCGTTCGGGGAGCAATTGGAGAGGAACACTGA
TGGAGTCCTCACAGCAGTGCAGACGTTGGCGTCCACTGCCCTGTGCGGCATAATCCACTC
CATTGTAGGAGGGCAGCCCCTGCTGATCCTGGGAGTTGCCGAACCGACGGTACTCATGTA
CACATTCATGTTCAACTTTGCCAAGGACAGGCCCGACCTCGGACGGAATCTGTTCCTGGC
CTGGACCGGTTGGGTTTGTGTGTGGACTGCTATCCTGCTCTTCTTGCTGGCCATACTAGG
CGCGTGCTCCATCATCAACCGGTTCACCCGCATCGCTGGCGAGCTGTTCGGGCTTCTGAT
TGCTATGCTCTTCATGCAGCAGGCTATCAAGGGACTTGTCGACGAGTTCCGCGTTCCTGA
GAGGGAAAACACAAAGGCACTAGAGTTTGTTCCATCATGGCGGTTCGCCAATGGGATGTT
CGCAATTGTCTTGTCGTTTGGCCTTTTACTCACTGCCCTCAGGAGCAGGAAGGCACGATC
ATGGCGCTATGGGACAGGCTGCGTGGCTTCATCGCTGACTATGGTGTTCCACTGATGGTG
CTAGTGTGGACTGGAGTGTCTTACATACCTTATGGAAATGTACCAAAAGGAATTCCGCGG
CGCCTTTTTAGCCCTAATCCATGGTCCCCTGGCGCATACGACAATTGGACAGTCGTCAAG
GACATGACACAGGTTCCACTCCTCTATATCCTTGGTGCATTCATACCAGCAACGATGATC
GCTGTTCTCTACTACTTCGATCACAGCGTTGCGTCTCAGCTTGCTCAGCAGAAAGAGTTC
AACTTGAGGAAGCCTCCATCCTTCCACTACGATTTGCTTCTCTTAGGTTTCCTGACGTTA
ATGTGTGGCCTTATTGGTATCCCTCCATCAAATGGTGTCATTCCACAATCACCCATGCAT
ACGAAGAGTTTGGCTACTCTCAAGCACCAGATCCTTCGTAACCGGCTAGTAGCCACCGCA
CGGAAGGGCATGAGCCAGAATGCAAGCCTGAGCCAACTGTATGGCAGCATGCAGGATGCT
TATCAGCAGATGCAGACACCACTGGTTTATCAGCAACAGTCTGTCAGAAGAGGCTTAAAT
GAGCTCAAGGACTCAACAGTCCAGCTAGCTTCGAGTATGGGTAACATTGATGCACCAGTT
GATGAGACAGTCTTTGACATAGAGAAAGAAATTGATGATCTGCTGCCCATCGAGGTCAAG
GAGCAGCGTTTGAGCAACCTTCTACAGGCTTCGATGGTGGTGGGCTGTGTCGCTGCTATG
CCCCTGCTCAAGAAGATCCCTACGTCTGTCCTCTGGGGCTATTTTGCCTTCATGGCCATT
GAGAGCTTGCCTGGTAACCAGTTTTGGGAGAGGATCTTGCTCCTCTTCACTGCTCCCAGC
AGAAGATACAAGGTGCTTGAAGAGTACCACACGACGTTCGTCGAGACAGTGCCATTCAAG
ACAATAGCCATGTTCACAGTGTTCCAGACAGCTTACCTGTTGGTCTGCTTTGGAATCACA
TGGATTCCAATAGCCGGAGTTCTTTTCCCTCTCATGATCATGCTCCTGGTTCCAGTCAGG
CAGTACATCCTCCCTAAGCTCTTCAAAGGTGCACATCTAACTGACCTGGATGCAGCTGAA
TACGAGGAATCACCAGCTATACCATTCAGCCTTGCTGCGCAAGACATCGATGTCGCATTG
GGACGCAGCCAGAGTGCAGAAATCCTAGACGACATGGTCACGAGAAGCCGGGGTGAGATC
AAACGCCTGAACAGCCCGAAGATCACCAGCTCAGGTGGCACGCCTGTGGCAGAACTGAAA
GGCATCCGCAGCCCATCCATTTCTGAAAAAGCATACAGCCCTCGTCTCACTGAGCTCCAG
CATGAGCGCAGCCCTCTGGACGCCATCCAAGTTGGGTGAAGGCTCGGCACCAAAGTGAAT
AAAGCAATGATGCATTGCTTAAGCTATGCAACTACTGGGTTACTGGCCATCAATTATATA
AGTGATTTTAAAGTGGTTTCAGTGTTAGTATCCAAGATGTCCTCTGATGAGATTACTACT
ATTCATGTGTATCTCTAGCCTCTTTTTCTTTCTTTCTCTTCTTTTGTGTTCTCCTGATTA
AAGGAGTGCTATACCTGTAATCTCTGAACTAGCAGAAATATTAGAGTAACTACT