Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030652_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:1:151023994:151029753:-1 gene:Zm00001d030652 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding protein MPCBP

Sequence

ATGGCGGCGGCGGAGTGGGACAGCCGGAGCGTGGCGAGCCCCACCGGGGATTGGCCACCG
GCGGCCGCCGCGTCCCCGATAAAGGGGAAGGCGGCACTGCCGGAGTCGGATGGAGGTGCC
TCGGCGTCCGGCTCATCGGAGGCCAAGGTCGACGATGGCAACATCCAGGAGGCGGAGTCG
TCGCTCCGCGAGGGTCTCTCCCTCAACTACGAGGAAGCTAGAGCTCTCCTTGGGAGACTG
GAATATCAGAGAGGCAATGTGGAAGCTGCTCTGCGAGTATTTGATGGAATTGACCTTCAA
GCTGCTATTCAGCGCTTCCAACCTTCTCTTTCTGATAAACCACTCTCGAAGCGAAGTAAC
AAATTACGGGCAGATTCATCAAATTCAGGATCACAGCATGCTGCTAGCCTTGTTCTTGAA
GCCATTTACTTGAAATCAATGTCTCTTCAAAAGTTGGGCAAGGCAATGGAGGCTGCTAAA
CAGTGTAAAAGTGTCCTTGATGCTGTTGAAAGTATCTTCCAATGTGGCATACCTGGTGTT
ATGGTTGAACAAAAACTGCAGGAAACTGTCAGTAAATCTGTTGAGCTTCTCCCAGAACTT
TGGAAGCAAGCTGGGGCCTATCAAGAAGCACTTGCTTCATACCGCCGTGCTCTTCTAAGT
CAATGGAATCTTGATGATGAATGCTGCACAAGGATTCAGAAGAGGTTTGCTGTTTTCTTG
TTGTACGGTGGTGTAGAGGCGGCCCCTCCAAGCTTGGCTTCACAAACTGAAGGTTCATTT
GTTCCTAGGAATAACTTAGAAGAGGCAATCCTACTGCTCATGATACTATTGAAGAAGTGG
TTCCTTGGGAAGACACACTGGGATCCATCTGTTATGGAGCATTTAACCTTTGCATTGTCA
CTGTGTGGCCAGACATCTATTATTGCCAAGCACCTCGAAGAGGTTTTACCTGGAATATAC
CCTCGAACCGAGAGATGGTATAGTCTAGCGTTGTGCTATTTTGCAGTTTCTCATAATGAA
GCTGCATTAAACTTGTTGAGGAAATCTTTGAATAAGAATGAGAGTCCAAATGACATAATG
GCCCTCCTGTTAGCTGCTAAGATATGTAGTTCCAATAATCTTCTTTCTTCTGAGGGTGTA
GAGTATGCAAAGAGAGCAGTCAGAGATGCCGAATCATCAGATGGGCATTTAAAGAGTGTG
GCCCTCCATGTTCTGGGGAGTTGCCTGTCCAGGAAGTCTAAGGTTGCTTCATCTGATCAC
CAAAGGTCTGTCTTGCAGGCTGAGGCTTTGAAGTCACTCAATGAGGCAATTTCTCTTGAC
CGTCACAACCCAGAATTATTATTTGAATTGGGGATAGAGTATGCTGAGCAGCGGAATATG
CATGCTGCCTTGAAATGTGCAAAGGAGTTCATTGATGTCACTGGTGGATCTGTCTCTAAA
GGCTGGAGGTTGCTATTGTTGGTTCTTTCTGCACAACAAAGGTATTCAGAAGCTGAAGTT
GTAACTGATGCTGCATTAGATGAGACCGCGAAGTGGGAACAAGGGCCATTGCTTAGAATA
AGGGCTAAACTGAAGGTTGCTCAAGCATTGCCTATGGAAGCAGTTGAAGCATATCGCACC
CTTCTTGCTCTTGTTCAGGCACAACGGAAGGCTTATGGATCTGTCAAAAATGGCACAGAG
GATAATGAGGATAAAGTGAGGGAAGTTGAAGTTTGGCATGGTCTTGCCAACCTGTACTCT
AGTCTTTCCTATTGGAGAGATGCAGAAATTTGCTTACAGAAGGCTAAAGCCCTCAAAACA
TACTCTGCGACAACCCTTCATGTAGAAGGTGGAAACAAACACGAACTGCATGAGAAGATA
CAGGACGCGGTAGCTGCATACTTCAATGCCATCTCTATGGAGGTTGAGCACGTCCCATCC
AAGGTCTCTATCGGTGCTCTCCTCTCTAAACAAGGGCCCAAGTTCCTACCAGTGGCGAGG
TGTTTCCTCTCCGATGCCCTGAGGCTTGAACCCACGAACCGCATGGCCTGGTTCTACCTT
GGGGAGGTTCACAAGCAGGACGGCAGGCTAGCTGATGCCGCCGACTGCTTCCAGGCGGCC
TCAATGCTCGAGGACTCGGATCCTGTAGAAAGTTTCAGATCACTCTGA

Peptide Sequence

PEP ID

Zm00001d030652_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:1:151023994:151029753:-1 gene:Zm00001d030652 transcript:Zm00001d030652_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding protein MPCBP

Sequence

MAAAEWDSRSVASPTGDWPPAAAASPIKGKAALPESDGGASASGSSEAKVDDGNIQEAES
SLREGLSLNYEEARALLGRLEYQRGNVEAALRVFDGIDLQAAIQRFQPSLSDKPLSKRSN
KLRADSSNSGSQHAASLVLEAIYLKSMSLQKLGKAMEAAKQCKSVLDAVESIFQCGIPGV
MVEQKLQETVSKSVELLPELWKQAGAYQEALASYRRALLSQWNLDDECCTRIQKRFAVFL
LYGGVEAAPPSLASQTEGSFVPRNNLEEAILLLMILLKKWFLGKTHWDPSVMEHLTFALS
LCGQTSIIAKHLEEVLPGIYPRTERWYSLALCYFAVSHNEAALNLLRKSLNKNESPNDIM
ALLLAAKICSSNNLLSSEGVEYAKRAVRDAESSDGHLKSVALHVLGSCLSRKSKVASSDH
QRSVLQAEALKSLNEAISLDRHNPELLFELGIEYAEQRNMHAALKCAKEFIDVTGGSVSK
GWRLLLLVLSAQQRYSEAEVVTDAALDETAKWEQGPLLRIRAKLKVAQALPMEAVEAYRT
LLALVQAQRKAYGSVKNGTEDNEDKVREVEVWHGLANLYSSLSYWRDAEICLQKAKALKT
YSATTLHVEGGNKHELHEKIQDAVAAYFNAISMEVEHVPSKVSIGALLSKQGPKFLPVAR
CFLSDALRLEPTNRMAWFYLGEVHKQDGRLADAADCFQAASMLEDSDPVESFRSL

Transcript Sequence

Transcript ID

Zm00001d030652_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:151023994:151029753:-1 gene:Zm00001d030652 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calmodulin-binding protein MPCBP

Sequence

AAGGTCCCAAGAGTAGAGTTGGATCTCGCCTTCTCCCTGTCGTACCCAACGGCGTTTTCC
CCTACATTGTCCTATCATGCTTGCCGGAGGATTCGAGCTACCGCGGCGGCAGCGGTGACG
TATCGGTATCGGCGGCAGCGATGGCGGCGGCGGAGTGGGACAGCCGGAGCGTGGCGAGCC
CCACCGGGGATTGGCCACCGGCGGCCGCCGCGTCCCCGATAAAGGGGAAGGCGGCACTGC
CGGAGTCGGATGGAGGTGCCTCGGCGTCCGGCTCATCGGAGGCCAAGGTCGACGATGGCA
ACATCCAGGAGGCGGAGTCGTCGCTCCGCGAGGGTCTCTCCCTCAACTACGAGGAAGCTA
GAGCTCTCCTTGGGAGACTGGAATATCAGAGAGGCAATGTGGAAGCTGCTCTGCGAGTAT
TTGATGGAATTGACCTTCAAGCTGCTATTCAGCGCTTCCAACCTTCTCTTTCTGATAAAC
CACTCTCGAAGCGAAGTAACAAATTACGGGCAGATTCATCAAATTCAGGATCACAGCATG
CTGCTAGCCTTGTTCTTGAAGCCATTTACTTGAAATCAATGTCTCTTCAAAAGTTGGGCA
AGGCAATGGAGGCTGCTAAACAGTGTAAAAGTGTCCTTGATGCTGTTGAAAGTATCTTCC
AATGTGGCATACCTGGTGTTATGGTTGAACAAAAACTGCAGGAAACTGTCAGTAAATCTG
TTGAGCTTCTCCCAGAACTTTGGAAGCAAGCTGGGGCCTATCAAGAAGCACTTGCTTCAT
ACCGCCGTGCTCTTCTAAGTCAATGGAATCTTGATGATGAATGCTGCACAAGGATTCAGA
AGAGGTTTGCTGTTTTCTTGTTGTACGGTGGTGTAGAGGCGGCCCCTCCAAGCTTGGCTT
CACAAACTGAAGGTTCATTTGTTCCTAGGAATAACTTAGAAGAGGCAATCCTACTGCTCA
TGATACTATTGAAGAAGTGGTTCCTTGGGAAGACACACTGGGATCCATCTGTTATGGAGC
ATTTAACCTTTGCATTGTCACTGTGTGGCCAGACATCTATTATTGCCAAGCACCTCGAAG
AGGTTTTACCTGGAATATACCCTCGAACCGAGAGATGGTATAGTCTAGCGTTGTGCTATT
TTGCAGTTTCTCATAATGAAGCTGCATTAAACTTGTTGAGGAAATCTTTGAATAAGAATG
AGAGTCCAAATGACATAATGGCCCTCCTGTTAGCTGCTAAGATATGTAGTTCCAATAATC
TTCTTTCTTCTGAGGGTGTAGAGTATGCAAAGAGAGCAGTCAGAGATGCCGAATCATCAG
ATGGGCATTTAAAGAGTGTGGCCCTCCATGTTCTGGGGAGTTGCCTGTCCAGGAAGTCTA
AGGTTGCTTCATCTGATCACCAAAGGTCTGTCTTGCAGGCTGAGGCTTTGAAGTCACTCA
ATGAGGCAATTTCTCTTGACCGTCACAACCCAGAATTATTATTTGAATTGGGGATAGAGT
ATGCTGAGCAGCGGAATATGCATGCTGCCTTGAAATGTGCAAAGGAGTTCATTGATGTCA
CTGGTGGATCTGTCTCTAAAGGCTGGAGGTTGCTATTGTTGGTTCTTTCTGCACAACAAA
GGTATTCAGAAGCTGAAGTTGTAACTGATGCTGCATTAGATGAGACCGCGAAGTGGGAAC
AAGGGCCATTGCTTAGAATAAGGGCTAAACTGAAGGTTGCTCAAGCATTGCCTATGGAAG
CAGTTGAAGCATATCGCACCCTTCTTGCTCTTGTTCAGGCACAACGGAAGGCTTATGGAT
CTGTCAAAAATGGCACAGAGGATAATGAGGATAAAGTGAGGGAAGTTGAAGTTTGGCATG
GTCTTGCCAACCTGTACTCTAGTCTTTCCTATTGGAGAGATGCAGAAATTTGCTTACAGA
AGGCTAAAGCCCTCAAAACATACTCTGCGACAACCCTTCATGTAGAAGGTGGAAACAAAC
ACGAACTGCATGAGAAGATACAGGACGCGGTAGCTGCATACTTCAATGCCATCTCTATGG
AGGTTGAGCACGTCCCATCCAAGGTCTCTATCGGTGCTCTCCTCTCTAAACAAGGGCCCA
AGTTCCTACCAGTGGCGAGGTGTTTCCTCTCCGATGCCCTGAGGCTTGAACCCACGAACC
GCATGGCCTGGTTCTACCTTGGGGAGGTTCACAAGCAGGACGGCAGGCTAGCTGATGCCG
CCGACTGCTTCCAGGCGGCCTCAATGCTCGAGGACTCGGATCCTGTAGAAAGTTTCAGAT
CACTCTGATGGGTCATCTGCAACAGCGTGAGGTTCCCTTTTTTTGTCGGCCGGTTTTCTC
TTCGTCTTCCCCCATTTTCGAGGCACAGCTGGGCAGAGACCAGGTGCCCAGCTATCTGTA
ACTTGTTGTATCTACAGTTGTCAGTGTGTACCAACAGATGCTGTAATTGGTTGTTGAGTG
GCCTACATGATTCTTCAACCGATAGCTCCATCAGGATCAGAGTGGCACTGGAACAGCTAT
GCAATCATATGAGCCATTATTATTACGTGTATTACACAGTATGAATATATGATTATAATG
AGTCATCAGCTAACTTAAAACTACCGTTGCTGATATTGTAATGTTTTGTAATTTTTATTC
CTGTTTTGTTTATCAATTACCAGACGTGCTGAACAGTGAGCACACCACGGGTAAATGAAA
TGGATGTTATACACCG