Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030548_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:143163535:143165480:1 gene:Zm00001d030548 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATGGCTGACGAGTCATGGAGGGTGCCAACCCCAGTGCAAGAACTGGCCGCAGGCGTGGTG
GAGCCACCGACCCAGTTCGTGCTGCAGGAGCAGGATCGTCCTGGATCTGGGACCCTGCTC
TTCGCCACTGACATGCCGGAGCCCATTCCCGTCGTTGACCTCAGCAGGCTGGCGGCTGCC
GACGAGGCTTCCAAGCTCCGGTCAGCACTGGAGACCTGGGGGCTCTTCCTGGTTACTAAG
CATGGGATAGAAGCATCTCTCATGGACGATGTGATGGCCGCGTCACGCGATTTTTTCTAC
CAGCCGCTCGAAGCGAAGCAGGAATACAGTAACCTGATAGGCGGCAAGCGGTTCCAGATG
GAGGGTTATGGTAATGACATGGTGAAATCCAAAGATCAGATACTGGACTGGCAAGATCGG
CTGCAGCTCAGGGTGGAACCCCAAGATGAGAGGAACCTCGCTTATTGGCCCAAACACCCT
GATTCTTTCAGGGATCTTCTGGAGAAGTATGCATCAAAAACCAAGATAGTTAGGAACAAA
GTCTTACGGGCGATGGGCAAAACATTGGAGCTTGGCGAAGACTATTTCATCAGCCAGATT
GGTGACAGGGCCTCAGCAATTGCTAGGTTCAACTACTACCCTCCCTGTCCAAGGCCTGAT
CTTGTCTTTGGCATTAAGCCTCACTCTGACGGTGGCGCGGTGACGATACTTCTCGTCGAC
AAGGATGTTGGGGGCCTGCAAGTTCAGAAAGATGGCGTTTGGTACACTGTTCCGTCCATG
CCTCACACGCTGCTTGTCAACTTGGGTGACTCCATGGAGATAATGAACAATGGGATCTTC
AAAAGTCCGGTGCACAGGGTTGTGACGAATGCAGAGAAAGAGAGACTCTCACTCGCCATG
TTCTACGGCGTGGAAGGCCAGAGAGTGCTTGAGCCAGCGCTTGGTTTGCTGGGTGAGGAG
CGACCAGCACGGTACAGGAAAATTATGGCCTCAGACTACATTATTGGGCTCCGTCAAGGA
ATTGCGGAAGGACAGAGATTTATCGAGACTTTGAAGATATAG

Peptide Sequence

PEP ID

Zm00001d030548_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:143163535:143165480:1 gene:Zm00001d030548 transcript:Zm00001d030548_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

MADESWRVPTPVQELAAGVVEPPTQFVLQEQDRPGSGTLLFATDMPEPIPVVDLSRLAAA
DEASKLRSALETWGLFLVTKHGIEASLMDDVMAASRDFFYQPLEAKQEYSNLIGGKRFQM
EGYGNDMVKSKDQILDWQDRLQLRVEPQDERNLAYWPKHPDSFRDLLEKYASKTKIVRNK
VLRAMGKTLELGEDYFISQIGDRASAIARFNYYPPCPRPDLVFGIKPHSDGGAVTILLVD
KDVGGLQVQKDGVWYTVPSMPHTLLVNLGDSMEIMNNGIFKSPVHRVVTNAEKERLSLAM
FYGVEGQRVLEPALGLLGEERPARYRKIMASDYIIGLRQGIAEGQRFIETLKI

Transcript Sequence

Transcript ID

Zm00001d030548_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:143163535:143165480:1 gene:Zm00001d030548 gene_biotype:protein_coding transcript_biotype:protein_coding description:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Sequence

ATCCAATTGAGGAAGAGAAGAGGCGATAAGCACACTAATGGCTGACGAGTCATGGAGGGT
GCCAACCCCAGTGCAAGAACTGGCCGCAGGCGTGGTGGAGCCACCGACCCAGTTCGTGCT
GCAGGAGCAGGATCGTCCTGGATCTGGGACCCTGCTCTTCGCCACTGACATGCCGGAGCC
CATTCCCGTCGTTGACCTCAGCAGGCTGGCGGCTGCCGACGAGGCTTCCAAGCTCCGGTC
AGCACTGGAGACCTGGGGGCTCTTCCTGGTTACTAAGCATGGGATAGAAGCATCTCTCAT
GGACGATGTGATGGCCGCGTCACGCGATTTTTTCTACCAGCCGCTCGAAGCGAAGCAGGA
ATACAGTAACCTGATAGGCGGCAAGCGGTTCCAGATGGAGGGTTATGGTAATGACATGGT
GAAATCCAAAGATCAGATACTGGACTGGCAAGATCGGCTGCAGCTCAGGGTGGAACCCCA
AGATGAGAGGAACCTCGCTTATTGGCCCAAACACCCTGATTCTTTCAGGGATCTTCTGGA
GAAGTATGCATCAAAAACCAAGATAGTTAGGAACAAAGTCTTACGGGCGATGGGCAAAAC
ATTGGAGCTTGGCGAAGACTATTTCATCAGCCAGATTGGTGACAGGGCCTCAGCAATTGC
TAGGTTCAACTACTACCCTCCCTGTCCAAGGCCTGATCTTGTCTTTGGCATTAAGCCTCA
CTCTGACGGTGGCGCGGTGACGATACTTCTCGTCGACAAGGATGTTGGGGGCCTGCAAGT
TCAGAAAGATGGCGTTTGGTACACTGTTCCGTCCATGCCTCACACGCTGCTTGTCAACTT
GGGTGACTCCATGGAGATAATGAACAATGGGATCTTCAAAAGTCCGGTGCACAGGGTTGT
GACGAATGCAGAGAAAGAGAGACTCTCACTCGCCATGTTCTACGGCGTGGAAGGCCAGAG
AGTGCTTGAGCCAGCGCTTGGTTTGCTGGGTGAGGAGCGACCAGCACGGTACAGGAAAAT
TATGGCCTCAGACTACATTATTGGGCTCCGTCAAGGAATTGCGGAAGGACAGAGATTTAT
CGAGACTTTGAAGATATAGTCAATCGTGAATGCTCAAGAATAATAAAGAGTTGCTTCGCC
CATTGCTAAATCAGATCAGAGTCCAATGTCCATTCTGTAATGCATTACCACATTGTTATA
CATGCTCGGAAGACTTCAGAGAAGATGTAATCCTGCTCGTTTTACTAAATTTGGGGCATT
AATAAATGATTAAATAAAAACACATGCATGGTCAGGTAACATGGTTGAGATGCACCCTTG
ATAATGATATTGTGGATCATAAGTGATCATCAAAGTGAGATGATCGAGATTTGGTTG