Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030542_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:142569190:142571156:-1 gene:Zm00001d030542 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase4 description: hydroxycinnamoyltransferase4
Sequence

ATGACGACCACGTTAGTGACGGTGGACATAACGCGCCGCACGGTGCTGAAACCCCCACCA
CCGGCGTCCTCCCGCGGCGGCGGCGGCAGCCTGTCCCGGCTGACGTCCTTCGACCGCGCC
TCCACCGACGGCTACATCCCGACCGTCTTCGCGTGGTACGCGCCTGCGCCGGACAACGAG
GCCATAGTGGATGGCCTCCTCGCTGTGGTCGCGAGGTACCCGCACCTGTCGGCCCGCATG
GGTGTCGACGACCGCGGCAGGAAGTGCTTCCTCCTCAACGACGCCGGGGTGCTTGTCGTG
GAGGCCACCGCCGACGCCGACCTTGCCGACGCGCTGGTGGCTCACGACGTGACGGCGCAC
ATCAACGAACTGTACCCCAAGGCTGATAAGGAACGTGAGGACGAGCCTCTCTTCCAGGTC
CAGCTGACGCGGTACACGTGCGGCGGCCTGGTGATCGGCACGGTGTGCCAACACCTCGTC
GCCGACGGGCAGTCCATGAGCTCCTTCTACGCGGCCTGGGCCACGGCCGTGCGCAGCGCC
TCGGCAGCCGATCTACCGTCGCCCTTCACCGACCGCGCGGCCATCGCCGTCCCACGCAAC
CCGCCCGTGCCCAGGTTCGACCACCGGAACATCGAGTTCCGCGGCGAGCATAGCTCGAGC
CGCCCCTACGCCGTCCTCCCCATGGACAGGATCAAGAACCTCGGCATCAACTTCCCGGAG
CAGTTCATCGCCGACCTCAAGGCCCGCGTGGGCGGCCGGTGCACCACGTTCCAGTGCCTC
CTGGCGCACGTCTGGAAGAAGGTCACGGCGGCGCGGGACCTGGCGCCGGAGGAGTTCACG
CAGATAAGGGTCGCCGTGAACTGCAGGGGCCGCGCCGACCCTCCGGTGCCCATGGAGTAC
TTCGGTAACATGGTGCTGTGGGCGTTCCCGCGGATGCAGGCCCGGGAGCTGCTGTCCTCC
AGCTACGCCGCGGTGGTCGGCGCCATCCGCGACGCCGTCGCGCGCGTCGACGCCGAGTAC
ATCCAGTCCTTCGTCGACTTCGGGGACATGGCGGAACGCGCCGGCGAGGAGCTGGCGTCC
ACGGCCGCGGGTCCGGGCACGGCCTTCTGCCCGGACCTGGAGGTGGACAGCTGGCTGGGG
TTCAGATTCCATGACCTCGACTTCGGGTACGGGGCACCGTGCGCCTTCCTGCCGCCCGAC
CTCCCCGTCGAGGGTCTCATGATCCTGGTGCCGTCGTGCGCGGCCAAGGGTGGCGTCGAC
CTCTTCATGGCTCTCGACGATGACCACGTTGATGCCTTCAAACACATCTGCTACTCCATG
GATTGA

Peptide Sequence

PEP ID

Zm00001d030542_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:142569190:142571156:-1 gene:Zm00001d030542 transcript:Zm00001d030542_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase4 description: hydroxycinnamoyltransferase4
Sequence

MTTTLVTVDITRRTVLKPPPPASSRGGGGSLSRLTSFDRASTDGYIPTVFAWYAPAPDNE
AIVDGLLAVVARYPHLSARMGVDDRGRKCFLLNDAGVLVVEATADADLADALVAHDVTAH
INELYPKADKEREDEPLFQVQLTRYTCGGLVIGTVCQHLVADGQSMSSFYAAWATAVRSA
SAADLPSPFTDRAAIAVPRNPPVPRFDHRNIEFRGEHSSSRPYAVLPMDRIKNLGINFPE
QFIADLKARVGGRCTTFQCLLAHVWKKVTAARDLAPEEFTQIRVAVNCRGRADPPVPMEY
FGNMVLWAFPRMQARELLSSSYAAVVGAIRDAVARVDAEYIQSFVDFGDMAERAGEELAS
TAAGPGTAFCPDLEVDSWLGFRFHDLDFGYGAPCAFLPPDLPVEGLMILVPSCAAKGGVD
LFMALDDDHVDAFKHICYSMD

Transcript Sequence

Transcript ID

Zm00001d030542_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:142569190:142571156:-1 gene:Zm00001d030542 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase4 description: hydroxycinnamoyltransferase4
Sequence

AACACGCATATCATTGAGGAAAAAACTCACTTGTTGGTTTTTCATCACAATCATTATTCT
CATCATCATCTGCTAGCTAGCTAGTCCATTGATCATTAGCTAGCAGCTACCAAGCTAAGC
CGACGACGATGACGACCACGTTAGTGACGGTGGACATAACGCGCCGCACGGTGCTGAAAC
CCCCACCACCGGCGTCCTCCCGCGGCGGCGGCGGCAGCCTGTCCCGGCTGACGTCCTTCG
ACCGCGCCTCCACCGACGGCTACATCCCGACCGTCTTCGCGTGGTACGCGCCTGCGCCGG
ACAACGAGGCCATAGTGGATGGCCTCCTCGCTGTGGTCGCGAGGTACCCGCACCTGTCGG
CCCGCATGGGTGTCGACGACCGCGGCAGGAAGTGCTTCCTCCTCAACGACGCCGGGGTGC
TTGTCGTGGAGGCCACCGCCGACGCCGACCTTGCCGACGCGCTGGTGGCTCACGACGTGA
CGGCGCACATCAACGAACTGTACCCCAAGGCTGATAAGGAACGTGAGGACGAGCCTCTCT
TCCAGGTCCAGCTGACGCGGTACACGTGCGGCGGCCTGGTGATCGGCACGGTGTGCCAAC
ACCTCGTCGCCGACGGGCAGTCCATGAGCTCCTTCTACGCGGCCTGGGCCACGGCCGTGC
GCAGCGCCTCGGCAGCCGATCTACCGTCGCCCTTCACCGACCGCGCGGCCATCGCCGTCC
CACGCAACCCGCCCGTGCCCAGGTTCGACCACCGGAACATCGAGTTCCGCGGCGAGCATA
GCTCGAGCCGCCCCTACGCCGTCCTCCCCATGGACAGGATCAAGAACCTCGGCATCAACT
TCCCGGAGCAGTTCATCGCCGACCTCAAGGCCCGCGTGGGCGGCCGGTGCACCACGTTCC
AGTGCCTCCTGGCGCACGTCTGGAAGAAGGTCACGGCGGCGCGGGACCTGGCGCCGGAGG
AGTTCACGCAGATAAGGGTCGCCGTGAACTGCAGGGGCCGCGCCGACCCTCCGGTGCCCA
TGGAGTACTTCGGTAACATGGTGCTGTGGGCGTTCCCGCGGATGCAGGCCCGGGAGCTGC
TGTCCTCCAGCTACGCCGCGGTGGTCGGCGCCATCCGCGACGCCGTCGCGCGCGTCGACG
CCGAGTACATCCAGTCCTTCGTCGACTTCGGGGACATGGCGGAACGCGCCGGCGAGGAGC
TGGCGTCCACGGCCGCGGGTCCGGGCACGGCCTTCTGCCCGGACCTGGAGGTGGACAGCT
GGCTGGGGTTCAGATTCCATGACCTCGACTTCGGGTACGGGGCACCGTGCGCCTTCCTGC
CGCCCGACCTCCCCGTCGAGGGTCTCATGATCCTGGTGCCGTCGTGCGCGGCCAAGGGTG
GCGTCGACCTCTTCATGGCTCTCGACGATGACCACGTTGATGCCTTCAAACACATCTGCT
ACTCCATGGATTGATCGCTAGCTCAACAAAACAAAGACGAGTATGTCCGCGCGCGGTATA
TCTACGTAGTACACAGCCACGTACGTCTTTGTAATACTGCAAGCGATATCGTGTTGATTA
CGTACGTACGTGGGCATCTGTTATATGTACATGACCAATTGTGTATATTACGTATGACCA
ATTATTCTTCATACACAGTACACACATAGAGATTCACAACGCTAGCTTGTGCACATTCAC
ATCTAAAAACGTACACGTGTAAACACTACCTTTGTAAGTATATTCGAAGACTGAGAGCCA
GCAAATTCAATGTATTAAAAATATAGTCGTCTAAAAGTATTAAGAG