Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d030398_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:1:129227435:129274590:-1 gene:Zm00001d030398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein MRL1 chloroplastic
Sequence	ATGGAGGCCTCCGCTTCCTCCTACGCTTCCGCTCCTGCAGCGCTCCTCCCGCTGCTGGCT GCCCCGCTGCGCTTCCTCCACCTCCCCCTCCGCCGTCCCTCTGCTCGCCGCCACGGCTTC GCGATTGGGGGTGGAGGTGGCCTTCTGCTCCAGCCGCCGCTGCTGGGCTCCGGCTCCCGT GCCCGCTGTAGGACGACCTGCTGCGTGTCAAGCCCCGAGCAGGCGGAAGTGCTGCTGGGC GGGGCCTCGTTCGTTAGCTTGGCGGCGGTCGCTCTCCTCACCGCTCTGCAGCTGATATGG TTGCGGTGGCGCAGTGCGAGGCACGGGGATTTCCCGGAGGTTTTACATGAACATGGCATA ATCATTGTAAAGACCCTTCGTACATCAAAAGCAATGTATGACAGTAATTTGGCACCACAT CTAACTCAGGGTAGTCACTGGCTTTCAGAGCCTTGTGTTTCTGGAAGAATGACTGTTGAT GAAATGAATCACAAGGCTGGTAACTTTCCCTGTGCACACACTGTACATACAGAAAAACAG GCTTATTCTGTAATTACTCCTTGGATATCTCCAGATATACCGTTATATGTTTCTAGACCT GAAGAAGTTAGTTGCGCAACTCCAACTGCAAATAGTTCCATAAAAAAGGATACAAGTCTT CCTGTGATGCCACATTCTGTGTCACAAGGGCAAGATAACTCCAAGTATTTGTCTAACAGA ACAGGCAGGGTAGCTGGGCTACCATATCAGTTTTTATCCCTTTCAGGGCAAAAGGAAGAG GCACAAAATAGTCAAGGTCATGATGATAAGCAAATGAATACCAAGGATGCTAATTTAGTT GGATACCCTCAGAGTGATGAAGAGGAACATCTTGATTTCACATCCCTTTCATCCTTTGAA AAAGTAGAAGGTCATCTTAATTTTGTTCCCCTGGCCAGCTACTGCAATTTACTTGAACCA GGGAAGGTGATTGGATTCACCAACTCTAATGCAGGGATCTCTTATTTGCCAGCAGGACGC TTTGCTCCAGTTGGATGTTTAAGGGAAGTTCCAGTGAGTAAACAAGTGAAATCTGTGAAG GTCCATGATGGTGGCTGGAACATTTCTAACATACTAAACAAAGAGAATCCAGATAACTTC GCTCCAGTAAAGAGAGGGGGATCGAAGGGCACGAAGGATACATTAGAGTACTTGAGGATA TACAACAGTTTCTTAATTGATGGAAGGTTGAAGGACTGCGTGGATTTGTTAGAAAGCATG GAACAAAATGGACTGCTTGATATGAGGAAGATACACCATGCCAGCTTTTTCAGTATGTGT AAGAAGCAAAGAGCTGTCTTGGAAGCTCTTCGCTTTTGCAGATTTATTGGGAACCCCAAG ATAAGTACCTTCAATATGCTTTTGTCGGTGTGTGCTAGTTCACTAGATTTTGACGGAGCG CTCCAAGTTATGGAGCTCCTAAAGGAAGCTGGGCTAAAACCTGATTGTAAACTTTACACA ACGCTGATATCAACTTGTGCAAAGTGTGGAAAAGTTGATGCCATGTTTGAGGTATTTTAT GAGATGGTCAGTGCTGGTATAGAGCCAAATGTTAACACATACAGTGCATTAATTGATGGC TGTGCTAGAGCTGGGCAAGTGGCTAAAGCATTTGGTGTTTATGGGATTATGAGTTCAAAG AAGGTGAAGCCAGATCGAGTTGTCTTCAATTCTTTGATCAGTGCATGCGGTGAATCTGGA GCTCTGGCTCGGGCATTTGATGTTTTATCAGAAATGACAGCAGAATCCTCTGAATCTAAA GGATGGAAACCAATCGTTCCTGATCATGTTACTGTTGGAGCACTGATGAAAACATGTATT TTGGCGGGCCAGGCTGATAGAGCTCGTGAGGTGTACAAAATGCTTCAGGAGTATAATATA AAGGGTACCCCAGAAGTTTACACAATCGCATTAAGAAGCTGTAGCTTGACTGGTGATTTA GGGTTTGCACTGAAGATATATGAAGATATGAACAGGATTGGAGTAAAACCTGATGAGATG TTTTTGAGTGCTCTAGTTGATGTAGCTGGCCATGCTAGGAGGGCAGATGCTGCCTTTGAA ATAATGAAAGATGCAAGAGCAAAAGGTTTACTCGTTGGAACAATTGCATACAGTTCGTTA ATGGGGGCTTGCTGTAATGCGGACGACTGGAAGAAGGCACTGCAGCTATACGAGGAGATC AAGTCTATCAAATTGACCCCATCGGTTTCAATGATGAATGCTTTGATCACCTCTCTGTGT GATGGTGATCAGGTCTTAAAGGCTGTTGATATCCTTAATGAGATGAACATATTAGGGGTC CATCCAAATGAGATAACATACTCAGTCTTATTTGTTGCTTGCGAAAGAAATGGTGAAGCA CAACTAGGTTTGGATTTGTTTGAACAATTAAAAATGGATGGCATTGACATCAATCCGACC ATAATTGGTTCTCTTACTGGTTTGTGCCTTCAAATGTTCAACATTGATTTTTCGCTTGGG AATATTATTGTCAACTTCAGCTCAGGGAAACCACAGATTGACAACAAATGGACTTCCTCA GCAGTTATGGTGTATCGTGAGGCAGTTTCAGCTGGGCTACTACCCTCAAGTGATGTTTTA TCTCAAGTGTTGGGATGTCTGAGGCTTCCTCATGGCAGTTCTCTGAAGAGTACTTTCATT GAAAACATGGGAGTAAGTTGTGACATTCCACAATACCCAAATATAAATTCACTTTTCGAA GGATTCGGTGAATATGACATTCGAGCTTTTTCTATATTGGAGGAGGCTGCTTCATTAGGA GCAGTTGCAAGCATTTCCATAAAAGAAACCCGGATTGTTATTGATGCTAGAAAGTTAAAG ATCTTCACAGCCGAGGTACTATTGCTGATTGGAACATGCCACATAAGCGAATCTGTATCC AAATGCAATTCAAGGACACATCAACATGTCCTGTTTCTTGTTTCTGTATTTTAG

Peptide Sequence

PEP ID	Zm00001d030398_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:1:129227435:129274590:-1 gene:Zm00001d030398 transcript:Zm00001d030398_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein MRL1 chloroplastic
Sequence	MEASASSYASAPAALLPLLAAPLRFLHLPLRRPSARRHGFAIGGGGGLLLQPPLLGSGSR ARCRTTCCVSSPEQAEVLLGGASFVSLAAVALLTALQLIWLRWRSARHGDFPEVLHEHGI IIVKTLRTSKAMYDSNLAPHLTQGSHWLSEPCVSGRMTVDEMNHKAGNFPCAHTVHTEKQ AYSVITPWISPDIPLYVSRPEEVSCATPTANSSIKKDTSLPVMPHSVSQGQDNSKYLSNR TGRVAGLPYQFLSLSGQKEEAQNSQGHDDKQMNTKDANLVGYPQSDEEEHLDFTSLSSFE KVEGHLNFVPLASYCNLLEPGKVIGFTNSNAGISYLPAGRFAPVGCLREVPVSKQVKSVK VHDGGWNISNILNKENPDNFAPVKRGGSKGTKDTLEYLRIYNSFLIDGRLKDCVDLLESM EQNGLLDMRKIHHASFFSMCKKQRAVLEALRFCRFIGNPKISTFNMLLSVCASSLDFDGA LQVMELLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFYEMVSAGIEPNVNTYSALIDG CARAGQVAKAFGVYGIMSSKKVKPDRVVFNSLISACGESGALARAFDVLSEMTAESSESK GWKPIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDL GFALKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSL MGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMNILGV HPNEITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLCLQMFNIDFSLG NIIVNFSSGKPQIDNKWTSSAVMVYREAVSAGLLPSSDVLSQVLGCLRLPHGSSLKSTFI ENMGVSCDIPQYPNINSLFEGFGEYDIRAFSILEEAASLGAVASISIKETRIVIDARKLK IFTAEVLLLIGTCHISESVSKCNSRTHQHVLFLVSVF

Transcript Sequence

Transcript ID	Zm00001d030398_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:129227435:129274590:-1 gene:Zm00001d030398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein MRL1 chloroplastic
Sequence	GAACGTTTCATCGTCATCATCCTAAACCTCACTCGCTCGGCCACTCCTCCCCAGGCAATG GAGGCCTCCGCTTCCTCCTACGCTTCCGCTCCTGCAGCGCTCCTCCCGCTGCTGGCTGCC CCGCTGCGCTTCCTCCACCTCCCCCTCCGCCGTCCCTCTGCTCGCCGCCACGGCTTCGCG ATTGGGGGTGGAGGTGGCCTTCTGCTCCAGCCGCCGCTGCTGGGCTCCGGCTCCCGTGCC CGCTGTAGGACGACCTGCTGCGTGTCAAGCCCCGAGCAGGCGGAAGTGCTGCTGGGCGGG GCCTCGTTCGTTAGCTTGGCGGCGGTCGCTCTCCTCACCGCTCTGCAGCTGATATGGTTG CGGTGGCGCAGTGCGAGGCACGGGGATTTCCCGGAGGTTTTACATGAACATGGCATAATC ATTGTAAAGACCCTTCGTACATCAAAAGCAATGTATGACAGTAATTTGGCACCACATCTA ACTCAGGGTAGTCACTGGCTTTCAGAGCCTTGTGTTTCTGGAAGAATGACTGTTGATGAA ATGAATCACAAGGCTGGTAACTTTCCCTGTGCACACACTGTACATACAGAAAAACAGGCT TATTCTGTAATTACTCCTTGGATATCTCCAGATATACCGTTATATGTTTCTAGACCTGAA GAAGTTAGTTGCGCAACTCCAACTGCAAATAGTTCCATAAAAAAGGATACAAGTCTTCCT GTGATGCCACATTCTGTGTCACAAGGGCAAGATAACTCCAAGTATTTGTCTAACAGAACA GGCAGGGTAGCTGGGCTACCATATCAGTTTTTATCCCTTTCAGGGCAAAAGGAAGAGGCA CAAAATAGTCAAGGTCATGATGATAAGCAAATGAATACCAAGGATGCTAATTTAGTTGGA TACCCTCAGAGTGATGAAGAGGAACATCTTGATTTCACATCCCTTTCATCCTTTGAAAAA GTAGAAGGTCATCTTAATTTTGTTCCCCTGGCCAGCTACTGCAATTTACTTGAACCAGGG AAGGTGATTGGATTCACCAACTCTAATGCAGGGATCTCTTATTTGCCAGCAGGACGCTTT GCTCCAGTTGGATGTTTAAGGGAAGTTCCAGTGAGTAAACAAGTGAAATCTGTGAAGGTC CATGATGGTGGCTGGAACATTTCTAACATACTAAACAAAGAGAATCCAGATAACTTCGCT CCAGTAAAGAGAGGGGGATCGAAGGGCACGAAGGATACATTAGAGTACTTGAGGATATAC AACAGTTTCTTAATTGATGGAAGGTTGAAGGACTGCGTGGATTTGTTAGAAAGCATGGAA CAAAATGGACTGCTTGATATGAGGAAGATACACCATGCCAGCTTTTTCAGTATGTGTAAG AAGCAAAGAGCTGTCTTGGAAGCTCTTCGCTTTTGCAGATTTATTGGGAACCCCAAGATA AGTACCTTCAATATGCTTTTGTCGGTGTGTGCTAGTTCACTAGATTTTGACGGAGCGCTC CAAGTTATGGAGCTCCTAAAGGAAGCTGGGCTAAAACCTGATTGTAAACTTTACACAACG CTGATATCAACTTGTGCAAAGTGTGGAAAAGTTGATGCCATGTTTGAGGTATTTTATGAG ATGGTCAGTGCTGGTATAGAGCCAAATGTTAACACATACAGTGCATTAATTGATGGCTGT GCTAGAGCTGGGCAAGTGGCTAAAGCATTTGGTGTTTATGGGATTATGAGTTCAAAGAAG GTGAAGCCAGATCGAGTTGTCTTCAATTCTTTGATCAGTGCATGCGGTGAATCTGGAGCT CTGGCTCGGGCATTTGATGTTTTATCAGAAATGACAGCAGAATCCTCTGAATCTAAAGGA TGGAAACCAATCGTTCCTGATCATGTTACTGTTGGAGCACTGATGAAAACATGTATTTTG GCGGGCCAGGCTGATAGAGCTCGTGAGGTGTACAAAATGCTTCAGGAGTATAATATAAAG GGTACCCCAGAAGTTTACACAATCGCATTAAGAAGCTGTAGCTTGACTGGTGATTTAGGG TTTGCACTGAAGATATATGAAGATATGAACAGGATTGGAGTAAAACCTGATGAGATGTTT TTGAGTGCTCTAGTTGATGTAGCTGGCCATGCTAGGAGGGCAGATGCTGCCTTTGAAATA ATGAAAGATGCAAGAGCAAAAGGTTTACTCGTTGGAACAATTGCATACAGTTCGTTAATG GGGGCTTGCTGTAATGCGGACGACTGGAAGAAGGCACTGCAGCTATACGAGGAGATCAAG TCTATCAAATTGACCCCATCGGTTTCAATGATGAATGCTTTGATCACCTCTCTGTGTGAT GGTGATCAGGTCTTAAAGGCTGTTGATATCCTTAATGAGATGAACATATTAGGGGTCCAT CCAAATGAGATAACATACTCAGTCTTATTTGTTGCTTGCGAAAGAAATGGTGAAGCACAA CTAGGTTTGGATTTGTTTGAACAATTAAAAATGGATGGCATTGACATCAATCCGACCATA ATTGGTTCTCTTACTGGTTTGTGCCTTCAAATGTTCAACATTGATTTTTCGCTTGGGAAT ATTATTGTCAACTTCAGCTCAGGGAAACCACAGATTGACAACAAATGGACTTCCTCAGCA GTTATGGTGTATCGTGAGGCAGTTTCAGCTGGGCTACTACCCTCAAGTGATGTTTTATCT CAAGTGTTGGGATGTCTGAGGCTTCCTCATGGCAGTTCTCTGAAGAGTACTTTCATTGAA AACATGGGAGTAAGTTGTGACATTCCACAATACCCAAATATAAATTCACTTTTCGAAGGA TTCGGTGAATATGACATTCGAGCTTTTTCTATATTGGAGGAGGCTGCTTCATTAGGAGCA GTTGCAAGCATTTCCATAAAAGAAACCCGGATTGTTATTGATGCTAGAAAGTTAAAGATC TTCACAGCCGAGGTACTATTGCTGATTGGAACATGCCACATAAGCGAATCTGTATCCAAA TGCAATTCAAGGACACATCAACATGTCCTGTTTCTTGTTTCTGTATTTTAGGATATTTTC TGAGTTAAGAGTGATTCTGGTGGAGCCACAGGGCAGGGAGCAATTTGGAAGTCATTGTGG TGGTGATTGAATGAGTGGGTCTTTTTAGCTCCCAGCTAGGGATGAAAATGGTTGAGAACA GTACAATAATACAGAATTGAGACTTCCTGTTTCTATCAAAATACCTAATAAACATAGCTC AAAAAACGGTTGTGCTAAAATAAAAAATGTCCACTTTCATATTTTGATAAAAACAGAAAC AGTCGTAAATGGTGTCATAATACGCAAAAGGGTATGAGATTTCCTCGTACCGCTTTCACC CCTCAGTCTCGCAGTGTAAATGGAGAAGCAATCCATGTCACATCTACACTAGAATCTAGT TGTGCTTTACTCGGTTTTCTGCCTAGGAGTAATTTACAATACAAATTTAGAGCTGGGAGC GTTCTCAAACAGCTCCTTTGATGTTAGCTACTGTAGGTACACTTCTATATTTTTCTTTGT GGTGATTTCTGCTGTACTGGTCATGCCCGTTGTCTAGACCCTTCTATTTCTTAATATTGA TACACTGATACACAACTCTCCTTTGTGTTCAGAAAAAAGGTCCACTTCTAGATTTTAGGG CCTTCTTGCTACCCTAAAGTCATCTTTCACAACAATCTGGTTTATAGAGACACTGATGTT CAGGAACCTAAAATATAAAAGCAAGCCCCTGTATGAAAATTATGGTTCTGTTGCATGCTG CTCATGGCATGGAGATTTGGCTAAAGTTGCTGGACCAATCATGTAGAAGACAGAAGTACA TGTGTTTGTGTTTCCAGTTTTGAGTATGCGGACCAATCATGTAGAGGAATTGTGGTGTTG CCAGCTATTTATGCAGCTGACAGCATTTCATATATATATATACATATATTATATATATAC ATATATTATTTTGCAGGTATCTCTTCTTAGAACCTTAAGATCTTTGAAGCATCGATTGGC TGCAGGTGAATGCTAGATTTTATTTAAAAAAATTATATTAGTGTGTTTATCCTACTATTT TCCATTGAATCAAAGAAACAAAGTATACATGCTTTGCAGTACCGACACAGGACAAATGGA CATGGTGTGAGAAACAATAAATATGGAGGGTCAATGGATTATTTGTGCTTCTGTACATTT TGTTTAGATTGTAAACTATATAAATACAGAATATTGGCCATTTGCTGATAAGGCGAGCTG ACAAATATATTCTGGACATTTTTTCTGAGTATAACTACTGAGTATTATTTAGTCAATTGA ATGCCTCACAGGCTAGAACCCCAATAAGAAAATGGAGAATTTTGTACTCATGTACCATTC TACATTAGGTTTTCTGTTTTAATATTTCTTAATAATGATGCAGGTTCAAGGTTACCAAAC GTGACAATCTTGTTACCTACAGAAAAGAAACAAGTTGACATTGATGAAAAGGAGAAAACA CTTAAACTTGCTGGAAGAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATT TCATACCAGGGGGAGGAATCTCATGGGAGGATGAGGATCAATGGCCTCACGATAAGGAGG TGGTTCAATCCAAAACTGAATAGCAAATCCTCTGCTGCCGGCCCAGCTGACTTGCTTCCA CTACCTTCGCGGTTAGCCAAAGGGATTGCTGGTCAGCAACGCGATATTAGAAACCTTTCA CTCGAGTAGTAGACTAGTACTACACGGCTATCCTGGAAGCGATCTCAGTAACCCGTGTGA TAAGAAGCGTAGTATAGTAAGATGTGCAAACGTGTGAAGAGTTTGTTCGGTAGAAGGAAA TACATAATCCATCAATCTGTAATGACAGTAGTCGAAGGAAAGATATGCACGATGCATCAA ACTTTTGTAATCATGTCAGGTAAAGGGATTTTCCCCTGAACATAATATACATATAGAGTT