Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030061_T030
CDS Infomation

cds chromosome:B73_RefGen_v4:1:102717448:102721734:1 gene:Zm00001d030061 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD zinc finger superfamily protein
Sequence

ATGCGAGTGAAGATGGAAAAAGTTCCAGTTGGTGAATGGTTTTGTGAAGAATGCCAGCTT
AAGGAAGATCAGAACAATACAAGAAGTAACTATGGTAACACAGCGGTTAATGTGACAGAA
GGAAAGAATCAAAGGACAGAAAGTCAAAGCAAGCTTAAAGCATTGCAAATTGTTGTGCCT
GATTTGGATGCTCCGCAAGTCACACACAGCGCACTGACAGCTGATCAGTGTGATGGTAGT
AAAAGTTTGCATTTAACTTCAGCTGATACACAAACACGGCTAAAGGATACCACAACAGCT
GCTGAAAGATTGGATATGAAGAACAAAAAAACATTAAGTGTTGCAAGATGTAACAAACTG
CAAGTTCTTACATCTGATTTGGACACACGACCACACAGTTATGGAAAACCAACATCTGGA
GTCTATAACAAGAAGAGTCGAAGTTCAGATTTTTTGTTGAACCACAAAAAGTTGCAAGTT
TCTACTGACATGGAGTCGCCACTGTCAAGTGAAGGCCTACAAAGTCCACCCATATCATCC
AAGAGACATGTAGAGAGCATGTCGTCCCCTAAGCCTAGGCTCTTCAAGACGGGTAGCCTT
GGAAAGCATGATGTCATCTCTCGTGATAACTCATTTAAAAAATCTAACAAGGGAGGTTTA
ACTTCAGTTGATAATGTTCCGGTGAGAACTACCCAGGCGGCTAAAAGTTCTGAGACCTTG
TCACGATCATATTCCATGGGGAACATGGTGAATGCTAAAGCTCCCATTCCTTCAGCAAGA
GGCCTTTTATCCAAGCAGCTATCCTTCAATAGCACCAACAACGGACCAAAAGTCAAGCAG
TTGGCTGATAAAATGTCTAGCAAGTTAAGACCTGCAGAACATTCCCCAAGAGATCCTAGA
GATAAGGAACCAATAAAAAAGATTGTACAATCAGGATCTTTCAAACGCGAGGGTTCAGAT
TCCGTAGATGTTGGATCATCAAAACAAAAGCAAACATTTCATTTGTCTCGAGATGAAAAA
CCAGGAGTACTGAAGCCAATAAAGGAAAAGAATTTAACAGAAAGAAGGGCTTCTTTTAGT
TTGAAAAAACCAAACATTCCTTCATCTCCAAGGTCTGACAGCTGTATGAAGTCAGGGGAA
AGAAAAAATGATCAGCATATTTCTGGAACAAACATACTTAAAAGTAGCAAAAGACCTGGA
TATGCTGAAAAGAATCTGAGGTACGATTTGTCCAGAACTGACAATGGCAATCAAGATGTT
ACCGTGCATCCAAAACCAATGGAAGTTTCTGGTAAAGATGCTTACGGAGTAAAGACATCT
AATCCACTATTTCGATCCCAATGTGCCAAAAAGTATAGATCAAATGATGTTGAAGATGAT
GATTTACCCATTTCAGTGAATAATGTTAACATTGCGCCAAATGAGCATGCTGAGGTGGTT
CCCACAATGTCTACTGCCATGACTCGTGAATCAAATTTACAAGATGTTCCAAGAGAAAGC
ACCTCTGATGATTTAGCTCCGAAAGTGGTTTGTTGCCAACAAAAGCTTTTGGAAAACACA
GGAGATGATTCCTGTAAAACTTTAGAGGTGGTTCAAGATTCAGGCGATATATTGTCTGCG
ACTCCACGTGGTCTTCAGATGGCACACAATCTATACCCCTATGACAACAAATTGGATAAA
CCAGATTTGAAGAAGGAAGCTTTTGCTGATCAATCTTCAGCTCTTGGGAATCCTTTAAAA
GATTTTGTTATTCCAGAGCAATCTTACATCTGGCAGGGTAGCTTTGAGGTATCAGGACAT
GGAAACTCCCCTGAAATGTTCAATGGGTTTCAAGCTTACTTGTCTACTTGTGCCTCGTCC
AAAGTTCGTGAAGTAGGTGAACAATTACCTGACAAAATTCAGCTAGCAGAAGTCCCACGG
CATTCCTCATGGCCGCTGCAATTTAATGAAGTAAATCCAACTGAAGATAATATTGCTCTT
TTTTTCTTTGCTAAAGATGTTGAAAGTTACGAAAGGGCATATGGGAAACTCTTGGATAAC
ATGCTTCTTGGTGATTTGTCCCTCAAAGCAAATATTGATAACATGGAACTTCTTATTTTT
CCATCTGATAAGTTGCCTGAGAGGATTCAACGTTGGAATGGTTTACTTTTCTTTTGGGGC
ATTTTTTATGCCCGGAAAGCAAGTAGTCCACTAGAGCTTCCTACAAATAATTGTCCATTA
GAACAAACCAATGGACCTGTTATCCAGCATGATATGGGTTCATCTAAGGCACTTCAGCCT
TTGGGTATAGATTTGAATGAGTGCCCTAATGATGATATATCTGATCCAGCTCTTTCACTT
GGATCAGAGAGTGAGAAATTTGGTGCATCTGTAGATTATAATGTTTTATCAGAGTCCAAA
CACGAGGATAGAAATCTGAATGCAAGTGAAGTACATCATGAAGAAACTGCTGGCACAAGA
CAAATTATATGGGGGCAACCTTCTGTAGCTCCCACTGTAACTAATCTTCCCACTATCTCA
ACAGGAGTTCATGACATCGTTCCGGATTATTCGGCTGCTGCAAAAGATAGCACAGGAACA
GCAGGTGGAAACAAAATGGAGAAAGCAGATCAGAATGAAGCTCTCTTTTGTTTTTCACAG
CAACCAGGTGCAATTGGATCGATCTCACATGAGATAAAACTTAAGAAACATGGTCTTCTG
CCTTCACATTGTCATTTTAGTGGATCAAAGATATGTGATGATCAAACCAAATCGACTCCA
AGTTCAGATATGGGTTCTTTGGATTCTCACCTCACCAACAAAAGGCAGAAGACTTATGGG
AAACACTCTACTTGCATTTTTGGAGATGAAATGCCACCTATTAAATGCTTGTCGAAGATA
CATCCCTTACCGGCTGGACAGGATAATCCAGTCGATGTTTTACATTGTCACAGGTGTCCT
TCAGATCCTGTCTCTCTTAAAAAAACAGTACCTGATCATATCATCAACGTGCTTTCATCT
GACGATGAAGATTCCCCAGAACCTAGTACTAGCTTAAATAAGGCATCACTGAAGGCAGAT
GAGGGCTCCTCCGCTTTATTGTTACTTTCCCTATCCATGGTGGCAACGAAGCATAATCTT
TCTGGTTCAGATATTGTAGATGATGAACCACTGTCTCTATCTCTTGGATTCCCCAGTGTT
GTCGACGGGAGTGAAGATCAGGAGATGAAGCAATTTCTGCCGGAGAAGCCAGGCATAAAC
ACTTAA

Peptide Sequence

PEP ID

Zm00001d030061_P030
PEP Infomation

pep chromosome:B73_RefGen_v4:1:102717448:102721734:1 gene:Zm00001d030061 transcript:Zm00001d030061_T030 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD zinc finger superfamily protein
Sequence

MRVKMEKVPVGEWFCEECQLKEDQNNTRSNYGNTAVNVTEGKNQRTESQSKLKALQIVVP
DLDAPQVTHSALTADQCDGSKSLHLTSADTQTRLKDTTTAAERLDMKNKKTLSVARCNKL
QVLTSDLDTRPHSYGKPTSGVYNKKSRSSDFLLNHKKLQVSTDMESPLSSEGLQSPPISS
KRHVESMSSPKPRLFKTGSLGKHDVISRDNSFKKSNKGGLTSVDNVPVRTTQAAKSSETL
SRSYSMGNMVNAKAPIPSARGLLSKQLSFNSTNNGPKVKQLADKMSSKLRPAEHSPRDPR
DKEPIKKIVQSGSFKREGSDSVDVGSSKQKQTFHLSRDEKPGVLKPIKEKNLTERRASFS
LKKPNIPSSPRSDSCMKSGERKNDQHISGTNILKSSKRPGYAEKNLRYDLSRTDNGNQDV
TVHPKPMEVSGKDAYGVKTSNPLFRSQCAKKYRSNDVEDDDLPISVNNVNIAPNEHAEVV
PTMSTAMTRESNLQDVPRESTSDDLAPKVVCCQQKLLENTGDDSCKTLEVVQDSGDILSA
TPRGLQMAHNLYPYDNKLDKPDLKKEAFADQSSALGNPLKDFVIPEQSYIWQGSFEVSGH
GNSPEMFNGFQAYLSTCASSKVREVGEQLPDKIQLAEVPRHSSWPLQFNEVNPTEDNIAL
FFFAKDVESYERAYGKLLDNMLLGDLSLKANIDNMELLIFPSDKLPERIQRWNGLLFFWG
IFYARKASSPLELPTNNCPLEQTNGPVIQHDMGSSKALQPLGIDLNECPNDDISDPALSL
GSESEKFGASVDYNVLSESKHEDRNLNASEVHHEETAGTRQIIWGQPSVAPTVTNLPTIS
TGVHDIVPDYSAAAKDSTGTAGGNKMEKADQNEALFCFSQQPGAIGSISHEIKLKKHGLL
PSHCHFSGSKICDDQTKSTPSSDMGSLDSHLTNKRQKTYGKHSTCIFGDEMPPIKCLSKI
HPLPAGQDNPVDVLHCHRCPSDPVSLKKTVPDHIINVLSSDDEDSPEPSTSLNKASLKAD
EGSSALLLLSLSMVATKHNLSGSDIVDDEPLSLSLGFPSVVDGSEDQEMKQFLPEKPGIN
T

Transcript Sequence

Transcript ID

Zm00001d030061_T030
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:102717448:102721734:1 gene:Zm00001d030061 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING/FYVE/PHD zinc finger superfamily protein
Sequence

TGTAGCTTCACGATGTGCCGCATTATTTGTAAGGTAAAATGCATACGCAACATCCATATT
TCACATGGACATGTTAGTGTTAACTGTTAATTTATTTTACTAGTTACTGCATGCGAGTGA
AGATGGAAAAAGTTCCAGTTGGTGAATGGTTTTGTGAAGAATGCCAGCTTAAGGAAGATC
AGAACAATACAAGAAGTAACTATGGTAACACAGCGGTTAATGTGACAGAAGGAAAGAATC
AAAGGACAGAAAGTCAAAGCAAGCTTAAAGCATTGCAAATTGTTGTGCCTGATTTGGATG
CTCCGCAAGTCACACACAGCGCACTGACAGCTGATCAGTGTGATGGTAGTAAAAGTTTGC
ATTTAACTTCAGCTGATACACAAACACGGCTAAAGGATACCACAACAGCTGCTGAAAGAT
TGGATATGAAGAACAAAAAAACATTAAGTGTTGCAAGATGTAACAAACTGCAAGTTCTTA
CATCTGATTTGGACACACGACCACACAGTTATGGAAAACCAACATCTGGAGTCTATAACA
AGAAGAGTCGAAGTTCAGATTTTTTGTTGAACCACAAAAAGTTGCAAGTTTCTACTGACA
TGGAGTCGCCACTGTCAAGTGAAGGCCTACAAAGTCCACCCATATCATCCAAGAGACATG
TAGAGAGCATGTCGTCCCCTAAGCCTAGGCTCTTCAAGACGGGTAGCCTTGGAAAGCATG
ATGTCATCTCTCGTGATAACTCATTTAAAAAATCTAACAAGGGAGGTTTAACTTCAGTTG
ATAATGTTCCGGTGAGAACTACCCAGGCGGCTAAAAGTTCTGAGACCTTGTCACGATCAT
ATTCCATGGGGAACATGGTGAATGCTAAAGCTCCCATTCCTTCAGCAAGAGGCCTTTTAT
CCAAGCAGCTATCCTTCAATAGCACCAACAACGGACCAAAAGTCAAGCAGTTGGCTGATA
AAATGTCTAGCAAGTTAAGACCTGCAGAACATTCCCCAAGAGATCCTAGAGATAAGGAAC
CAATAAAAAAGATTGTACAATCAGGATCTTTCAAACGCGAGGGTTCAGATTCCGTAGATG
TTGGATCATCAAAACAAAAGCAAACATTTCATTTGTCTCGAGATGAAAAACCAGGAGTAC
TGAAGCCAATAAAGGAAAAGAATTTAACAGAAAGAAGGGCTTCTTTTAGTTTGAAAAAAC
CAAACATTCCTTCATCTCCAAGGTCTGACAGCTGTATGAAGTCAGGGGAAAGAAAAAATG
ATCAGCATATTTCTGGAACAAACATACTTAAAAGTAGCAAAAGACCTGGATATGCTGAAA
AGAATCTGAGGTACGATTTGTCCAGAACTGACAATGGCAATCAAGATGTTACCGTGCATC
CAAAACCAATGGAAGTTTCTGGTAAAGATGCTTACGGAGTAAAGACATCTAATCCACTAT
TTCGATCCCAATGTGCCAAAAAGTATAGATCAAATGATGTTGAAGATGATGATTTACCCA
TTTCAGTGAATAATGTTAACATTGCGCCAAATGAGCATGCTGAGGTGGTTCCCACAATGT
CTACTGCCATGACTCGTGAATCAAATTTACAAGATGTTCCAAGAGAAAGCACCTCTGATG
ATTTAGCTCCGAAAGTGGTTTGTTGCCAACAAAAGCTTTTGGAAAACACAGGAGATGATT
CCTGTAAAACTTTAGAGGTGGTTCAAGATTCAGGCGATATATTGTCTGCGACTCCACGTG
GTCTTCAGATGGCACACAATCTATACCCCTATGACAACAAATTGGATAAACCAGATTTGA
AGAAGGAAGCTTTTGCTGATCAATCTTCAGCTCTTGGGAATCCTTTAAAAGATTTTGTTA
TTCCAGAGCAATCTTACATCTGGCAGGGTAGCTTTGAGGTATCAGGACATGGAAACTCCC
CTGAAATGTTCAATGGGTTTCAAGCTTACTTGTCTACTTGTGCCTCGTCCAAAGTTCGTG
AAGTAGGTGAACAATTACCTGACAAAATTCAGCTAGCAGAAGTCCCACGGCATTCCTCAT
GGCCGCTGCAATTTAATGAAGTAAATCCAACTGAAGATAATATTGCTCTTTTTTTCTTTG
CTAAAGATGTTGAAAGTTACGAAAGGGCATATGGGAAACTCTTGGATAACATGCTTCTTG
GTGATTTGTCCCTCAAAGCAAATATTGATAACATGGAACTTCTTATTTTTCCATCTGATA
AGTTGCCTGAGAGGATTCAACGTTGGAATGGTTTACTTTTCTTTTGGGGCATTTTTTATG
CCCGGAAAGCAAGTAGTCCACTAGAGCTTCCTACAAATAATTGTCCATTAGAACAAACCA
ATGGACCTGTTATCCAGCATGATATGGGTTCATCTAAGGCACTTCAGCCTTTGGGTATAG
ATTTGAATGAGTGCCCTAATGATGATATATCTGATCCAGCTCTTTCACTTGGATCAGAGA
GTGAGAAATTTGGTGCATCTGTAGATTATAATGTTTTATCAGAGTCCAAACACGAGGATA
GAAATCTGAATGCAAGTGAAGTACATCATGAAGAAACTGCTGGCACAAGACAAATTATAT
GGGGGCAACCTTCTGTAGCTCCCACTGTAACTAATCTTCCCACTATCTCAACAGGAGTTC
ATGACATCGTTCCGGATTATTCGGCTGCTGCAAAAGATAGCACAGGAACAGCAGGTGGAA
ACAAAATGGAGAAAGCAGATCAGAATGAAGCTCTCTTTTGTTTTTCACAGCAACCAGGTG
CAATTGGATCGATCTCACATGAGATAAAACTTAAGAAACATGGTCTTCTGCCTTCACATT
GTCATTTTAGTGGATCAAAGATATGTGATGATCAAACCAAATCGACTCCAAGTTCAGATA
TGGGTTCTTTGGATTCTCACCTCACCAACAAAAGGCAGAAGACTTATGGGAAACACTCTA
CTTGCATTTTTGGAGATGAAATGCCACCTATTAAATGCTTGTCGAAGATACATCCCTTAC
CGGCTGGACAGGATAATCCAGTCGATGTTTTACATTGTCACAGGTGTCCTTCAGATCCTG
TCTCTCTTAAAAAAACAGTACCTGATCATATCATCAACGTGCTTTCATCTGACGATGAAG
ATTCCCCAGAACCTAGTACTAGCTTAAATAAGGCATCACTGAAGGCAGATGAGGGCTCCT
CCGCTTTATTGTTACTTTCCCTATCCATGGTGGCAACGAAGCATAATCTTTCTGGTTCAG
ATATTGTAGATGATGAACCACTGTCTCTATCTCTTGGATTCCCCAGTGTTGTCGACGGGA
GTGAAGATCAGGAGATGAAGCAATTTCTGCCGGAGAAGCCAGGCATAAACACTTAATGCC
CCCTTTAGATTTGCGAGTGTACAGTTTTGTGCTATGTTTAGCTGTAAGGAGTTTAGACAG
GGTAGAAGTATATGGTATAACCGTTAAATTATGAATAATTTTCCTTTCTTTTCTCTCACT
GTTATATGCATCTGCTGCTGTTGTTAGTGATACTGGTCTGATGATGTTATTGCCTGCTGT
ATTTATGTGATATATGGTGTTAGTTTCTTTAAGACATTATTGGTATGACATAAAAGGATA
GATC