Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d030040_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:101466317:101468065:1 gene:Zm00001d030040 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence

ATGCTGCCAGGATCAGAGCCGGCGGCCGGCGGCACCGGTATGTTCGTGCCGGCGGCGACG
GCGGGCACGGTGCTCTGCTGCATGTGTGGTGTGTCCATGCAGCCCAACCCGGCCAACATG
TGCGCGCGCTGCCTGCGCGCTCGCGTCGACATCACCGAAGGCGTCCCGCGCCACGCCGCC
GTGGTCTACTGCCCCGACTGTTCCTCCTACCTCCAGCCGCCGCGGTCCTGGCTCCGCGCC
ACACCCGAGTCGCCCGAGCTCATGCAGATCCTGCTCCGCCGAGTCAACCGCCCACTCGCG
CGGCTACGCGTCTCCCTCTCCGGCGCCGAGTTCGTCTTCTCCGAGCCCCACTCTAAGCGC
CTCCGCCTCAACCTCCGCCTCCGCCGCGAGGTGCTCCACGGCATCGTCCTCGAGCAGACG
CACCCCGTCGAGTTCGTCGTCCACGACCGACTCTGCGACTCCTGCTCCCGCGCGCAGGCC
AACCCCGATCAGTGGGTCGCCGTCGTCCAGCTCCGCCAGCACGTGCCCCACCGCCGCACC
TTCCTCTACCTCGAGCAGCTCCTCCTAAAACACGGCCAGGCTTCCCTAGCGATCCGAGTC
GCGGCGGCCCCCGGCGGCCTCGACTTCTTCTTCGGCTCGCGTTCCCATGCCGCCCGCCTG
GTCGACTTCCTTGCCACCGTCGCTCCTATCCAAACTCAGACAGCGAAGCAGCTCGTCTCG
CACGACACCAAGAGCAGCGTCTACAACTACAAGTACACCTTTTCGGTCGATATCTGCCCT
ATCTGCCGTGAGGACCTCATCGCGCTCAGTCCCCAGGCGTCCCGGGACATGGGTGGCCTT
GGCCCGCTCGTGCTCTGTGTCAAGGTCACAAATGCCATTGCTCTTCTTGATCCCCTCACG
CTGCGAGTGCACCACCTGGAGGAGAAAAAATACAGGGTCTATAATTTCAAGGCAACTCTC
ACCAGCAAGCAGCTTGTGGAGTACATTGTGCTCGACATAGAACAAGAATCGCCTGAAATT
TCTATTGATGGGTCTCGATACCAATTGGCTTATGCTCAGGTTGCCCGGGTGTCAGATTTC
GGGAAGAATGACACCATCTTTACTGTGAGGACGCATCTTGGGCACCTGCTGAACCCTGGT
GATCATGCCCTTGGGTATGATCTCTATGGTGCCAACCTAAATGATGATGACATGAACACA
GCTATGACTCGGTACAGCTTACCTGAGGCGGTTCTTGTCAAGAAGAGCTACGAGAAGAGG
CCTCGCACACGGCGATGGAAGCTTAAGAGGTTGCCGGTGGAGGAAGATGCTGCAAATAAG
GCCAAGGGTGAGGAAGAGAAGACGCTAGATGAGTACGAGGCTTTCCTCAGGGATTTGGAG
CTGGACCCAGGGATGCGGTTCGGGGTGAATCTGTACAAGAATGAGGACTATAGGTCTGAG
ATGGCATCAACAGTTGGTGATGATATCCCTACGGTGCCAATCGAGGAGCTGATTGAGGAC
TTGACCCTTGGTGACAATGAGGATGATGAAGGGGAAGAAGCTGTGGAAGGCAACACTCAT
GCTGGAATGGTGGAATGA

Peptide Sequence

PEP ID

Zm00001d030040_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:101466317:101468065:1 gene:Zm00001d030040 transcript:Zm00001d030040_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence

MLPGSEPAAGGTGMFVPAATAGTVLCCMCGVSMQPNPANMCARCLRARVDITEGVPRHAA
VVYCPDCSSYLQPPRSWLRATPESPELMQILLRRVNRPLARLRVSLSGAEFVFSEPHSKR
LRLNLRLRREVLHGIVLEQTHPVEFVVHDRLCDSCSRAQANPDQWVAVVQLRQHVPHRRT
FLYLEQLLLKHGQASLAIRVAAAPGGLDFFFGSRSHAARLVDFLATVAPIQTQTAKQLVS
HDTKSSVYNYKYTFSVDICPICREDLIALSPQASRDMGGLGPLVLCVKVTNAIALLDPLT
LRVHHLEEKKYRVYNFKATLTSKQLVEYIVLDIEQESPEISIDGSRYQLAYAQVARVSDF
GKNDTIFTVRTHLGHLLNPGDHALGYDLYGANLNDDDMNTAMTRYSLPEAVLVKKSYEKR
PRTRRWKLKRLPVEEDAANKAKGEEEKTLDEYEAFLRDLELDPGMRFGVNLYKNEDYRSE
MASTVGDDIPTVPIEELIEDLTLGDNEDDEGEEAVEGNTHAGMVE

Transcript Sequence

Transcript ID

Zm00001d030040_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:101466317:101468065:1 gene:Zm00001d030040 gene_biotype:protein_coding transcript_biotype:protein_coding description:nonsense-mediated mRNA decay NMD3 family protein
Sequence

TGGACTCCGTCATCGCATTCGTCACCACCTCTGCCGCCTCGCGGCCGCCGCATTCATCCC
CTGCGATTACAAAACCCTACGATAGTTCTCCACCAATTCCTCTAATCCCTGGTCGCTAGG
TAGTTCCTGCGCCTCCATCCCGATCCCCTGTCTGATCCAATCGTAATCAGGATGCTGCCA
GGATCAGAGCCGGCGGCCGGCGGCACCGGTATGTTCGTGCCGGCGGCGACGGCGGGCACG
GTGCTCTGCTGCATGTGTGGTGTGTCCATGCAGCCCAACCCGGCCAACATGTGCGCGCGC
TGCCTGCGCGCTCGCGTCGACATCACCGAAGGCGTCCCGCGCCACGCCGCCGTGGTCTAC
TGCCCCGACTGTTCCTCCTACCTCCAGCCGCCGCGGTCCTGGCTCCGCGCCACACCCGAG
TCGCCCGAGCTCATGCAGATCCTGCTCCGCCGAGTCAACCGCCCACTCGCGCGGCTACGC
GTCTCCCTCTCCGGCGCCGAGTTCGTCTTCTCCGAGCCCCACTCTAAGCGCCTCCGCCTC
AACCTCCGCCTCCGCCGCGAGGTGCTCCACGGCATCGTCCTCGAGCAGACGCACCCCGTC
GAGTTCGTCGTCCACGACCGACTCTGCGACTCCTGCTCCCGCGCGCAGGCCAACCCCGAT
CAGTGGGTCGCCGTCGTCCAGCTCCGCCAGCACGTGCCCCACCGCCGCACCTTCCTCTAC
CTCGAGCAGCTCCTCCTAAAACACGGCCAGGCTTCCCTAGCGATCCGAGTCGCGGCGGCC
CCCGGCGGCCTCGACTTCTTCTTCGGCTCGCGTTCCCATGCCGCCCGCCTGGTCGACTTC
CTTGCCACCGTCGCTCCTATCCAAACTCAGACAGCGAAGCAGCTCGTCTCGCACGACACC
AAGAGCAGCGTCTACAACTACAAGTACACCTTTTCGGTCGATATCTGCCCTATCTGCCGT
GAGGACCTCATCGCGCTCAGTCCCCAGGCGTCCCGGGACATGGGTGGCCTTGGCCCGCTC
GTGCTCTGTGTCAAGGTCACAAATGCCATTGCTCTTCTTGATCCCCTCACGCTGCGAGTG
CACCACCTGGAGGAGAAAAAATACAGGGTCTATAATTTCAAGGCAACTCTCACCAGCAAG
CAGCTTGTGGAGTACATTGTGCTCGACATAGAACAAGAATCGCCTGAAATTTCTATTGAT
GGGTCTCGATACCAATTGGCTTATGCTCAGGTTGCCCGGGTGTCAGATTTCGGGAAGAAT
GACACCATCTTTACTGTGAGGACGCATCTTGGGCACCTGCTGAACCCTGGTGATCATGCC
CTTGGGTATGATCTCTATGGTGCCAACCTAAATGATGATGACATGAACACAGCTATGACT
CGGTACAGCTTACCTGAGGCGGTTCTTGTCAAGAAGAGCTACGAGAAGAGGCCTCGCACA
CGGCGATGGAAGCTTAAGAGGTTGCCGGTGGAGGAAGATGCTGCAAATAAGGCCAAGGGT
GAGGAAGAGAAGACGCTAGATGAGTACGAGGCTTTCCTCAGGGATTTGGAGCTGGACCCA
GGGATGCGGTTCGGGGTGAATCTGTACAAGAATGAGGACTATAGGTCTGAGATGGCATCA
ACAGTTGGTGATGATATCCCTACGGTGCCAATCGAGGAGCTGATTGAGGACTTGACCCTT
GGTGACAATGAGGATGATGAAGGGGAAGAAGCTGTGGAAGGCAACACTCATGCTGGAATG
GTGGAATGA