Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029872_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:1:91253159:91258215:1 gene:Zm00001d029872 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 2A
Sequence

ATGAAGCAACGTTGTGAAGAGTATTTAAGCTTTATTGGCACTCTTCCACAGGATGTTGAG
GTAGTTAATTCAGTAGATTCAACTGTCCCTGAGAAGCCACGGCTAGAGCTGTTCAAGCAT
GACTGCTCCAGCTCTGGAAAATGTAGTGAATATAGCAACACAGAATCTTCTGATGATGTT
GGCAAGCAAGAGATTAGTGAACTATCAGACGGAGATGAATTTCATTTCTATGACACAAGG
CAAAGTTTCAGTGAATTTGCTTCTAGTCCTGCTGACCCGAGAAAGGGATGTTTAAACAAC
GGAAATGAAGATCATAAATCTGTTGAATCATTGACGGTTGACAAGGCTGAGAAATATATG
CTATCACATTCAAAAAGGCGCTTACAGTTGCCTGAACCAATAGAAAAGGAGAAAGGAGTT
AGCCTTTGGTCAATGATCAAAGACAATGTTGGAAAGGATCTAACAAGAGTTTGTCTTCCT
GTTTACTTTAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTATTCT
TATTTGTTGGATCGTGCATATGAATGTGGTTTAAGGGGGAATGGTCTGATGAGAATTCTT
TATGTTGCTGCATTTGCGGTCTCTGGATATGCATCCACAGATTCCCGGCCTTGCAAACCT
TTCAATCCATTGCTTGGGGAAACCTATGAAGCTGATTACCCTGAAAAGGGGATCCGTTTT
TTCTCTGAAAAGGTCAGTCATCATCCTATGGTCATGGCATGTCACTGTGAGGGGAAAGGT
TGGAAATTTTGGGGAGACAGCAATCTGAAGAGCAAATTCTGGGGACAATCCATTCAATTG
GATCCTAATGGTGTGCTAACTTTAGAGTTTGATGATGGAGAAATTTTCCAATGGAGCAAG
GTTACAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCACCATGGCACA
ATGAACATAAGTGGGAATAGACGATATTCATGCAAGCTGACTTTTAAGGAGCAGTCTTTC
CTTGATCGGAATCCTCGCCAGGTTCAAGGAGTCGTCAAGGATGCTGGTGGAAGCAAGGTT
GCAACATTGACGGGGAAGTGGGATGAAAGTGTGCATTGTGTCATCAACAATGATGCCTCT
AAGGTGAACTCTCATGGTCCACATCAGAGTTCTGGTTCCACTTTGCTATGGGAGAAAAAT
GAGCCTCCAGTCAATCCTACCCGCTACAACTTGTCCGCATTTGCAATAACACTAAATGAG
TTAACACCAGAGCTCGAGGAGAAGCTGCCACCGACGGATTCAAGGCTGAGACCAGATCAA
CGGCACCTGGAGAATGGGGAGTACGAGAAGGCCAATGCTGAAAAACTGCGCCTCGAGACA
CAGCAACGGATGGCAAGGAAGATGCAGGAGAGTGGCTGGAAACCAAGATGGTTCCAAAGG
GACAGCGAGGATGGAACGTACCGCTACGTCGGAGGTTACTGGGAGGCAAGGGAGCAGAGA
ACATGGGTCGGCTGCAATGACATATTTGGTAACTTGTCTAGCAGCCAGAAGCTCCCACCA
TCCGCTCTCTACACGAGCTGA

Peptide Sequence

PEP ID

Zm00001d029872_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:1:91253159:91258215:1 gene:Zm00001d029872 transcript:Zm00001d029872_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 2A
Sequence

MKQRCEEYLSFIGTLPQDVEVVNSVDSTVPEKPRLELFKHDCSSSGKCSEYSNTESSDDV
GKQEISELSDGDEFHFYDTRQSFSEFASSPADPRKGCLNNGNEDHKSVESLTVDKAEKYM
LSHSKRRLQLPEPIEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPLSSLQKCFEELEYS
YLLDRAYECGLRGNGLMRILYVAAFAVSGYASTDSRPCKPFNPLLGETYEADYPEKGIRF
FSEKVSHHPMVMACHCEGKGWKFWGDSNLKSKFWGQSIQLDPNGVLTLEFDDGEIFQWSK
VTTTINNLILGRVYCHHHGTMNISGNRRYSCKLTFKEQSFLDRNPRQVQGVVKDAGGSKV
ATLTGKWDESVHCVINNDASKVNSHGPHQSSGSTLLWEKNEPPVNPTRYNLSAFAITLNE
LTPELEEKLPPTDSRLRPDQRHLENGEYEKANAEKLRLETQQRMARKMQESGWKPRWFQR
DSEDGTYRYVGGYWEAREQRTWVGCNDIFGNLSSSQKLPPSALYTS

Transcript Sequence

Transcript ID

Zm00001d029872_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:91253159:91258215:1 gene:Zm00001d029872 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oxysterol-binding protein-related protein 2A
Sequence

AGATATCATCATTTAGTGAAAGTAAATCAGATGATAAACGGTTTTATATAATTACTCCGA
CCAAAACACTTCAACTGAGGACTGGTTGTGCTAATGACCGGGCGACTTGGATTGAAGCGC
TTGTCACTGCAAGAAGCGAATATTCTTTTAATGGGGATTTATCAGGTGATCAGAATGATG
CATCATTTTCCACAGAAAAGCTCAGAAATCGCTTGAATGCTGAAGGCGTTGGCGAGGCCG
TTATTAAAGACTGTGAGCAGATTATTCATTCAGAATTTTCGCAGTACCAAACACAGATGA
AGCAACGTTGTGAAGAGTATTTAAGCTTTATTGGCACTCTTCCACAGGATGTTGAGGTAG
TTAATTCAGTAGATTCAACTGTCCCTGAGAAGCCACGGCTAGAGCTGTTCAAGCATGACT
GCTCCAGCTCTGGAAAATGTAGTGAATATAGCAACACAGAATCTTCTGATGATGTTGGCA
AGCAAGAGATTAGTGAACTATCAGACGGAGATGAATTTCATTTCTATGACACAAGGCAAA
GTTTCAGTGAATTTGCTTCTAGTCCTGCTGACCCGAGAAAGGGATGTTTAAACAACGGAA
ATGAAGATCATAAATCTGTTGAATCATTGACGGTTGACAAGGCTGAGAAATATATGCTAT
CACATTCAAAAAGGCGCTTACAGTTGCCTGAACCAATAGAAAAGGAGAAAGGAGTTAGCC
TTTGGTCAATGATCAAAGACAATGTTGGAAAGGATCTAACAAGAGTTTGTCTTCCTGTTT
ACTTTAATGAGCCTTTATCTTCTCTCCAGAAGTGCTTTGAAGAGTTGGAGTATTCTTATT
TGTTGGATCGTGCATATGAATGTGGTTTAAGGGGGAATGGTCTGATGAGAATTCTTTATG
TTGCTGCATTTGCGGTCTCTGGATATGCATCCACAGATTCCCGGCCTTGCAAACCTTTCA
ATCCATTGCTTGGGGAAACCTATGAAGCTGATTACCCTGAAAAGGGGATCCGTTTTTTCT
CTGAAAAGGTCAGTCATCATCCTATGGTCATGGCATGTCACTGTGAGGGGAAAGGTTGGA
AATTTTGGGGAGACAGCAATCTGAAGAGCAAATTCTGGGGACAATCCATTCAATTGGATC
CTAATGGTGTGCTAACTTTAGAGTTTGATGATGGAGAAATTTTCCAATGGAGCAAGGTTA
CAACAACAATTAACAACCTTATCCTTGGTCGAGTATATTGCCATCACCATGGCACAATGA
ACATAAGTGGGAATAGACGATATTCATGCAAGCTGACTTTTAAGGAGCAGTCTTTCCTTG
ATCGGAATCCTCGCCAGGTTCAAGGAGTCGTCAAGGATGCTGGTGGAAGCAAGGTTGCAA
CATTGACGGGGAAGTGGGATGAAAGTGTGCATTGTGTCATCAACAATGATGCCTCTAAGG
TGAACTCTCATGGTCCACATCAGAGTTCTGGTTCCACTTTGCTATGGGAGAAAAATGAGC
CTCCAGTCAATCCTACCCGCTACAACTTGTCCGCATTTGCAATAACACTAAATGAGTTAA
CACCAGAGCTCGAGGAGAAGCTGCCACCGACGGATTCAAGGCTGAGACCAGATCAACGGC
ACCTGGAGAATGGGGAGTACGAGAAGGCCAATGCTGAAAAACTGCGCCTCGAGACACAGC
AACGGATGGCAAGGAAGATGCAGGAGAGTGGCTGGAAACCAAGATGGTTCCAAAGGGACA
GCGAGGATGGAACGTACCGCTACGTCGGAGGTTACTGGGAGGCAAGGGAGCAGAGAACAT
GGGTCGGCTGCAATGACATATTTGGTAACTTGTCTAGCAGCCAGAAGCTCCCACCATCCG
CTCTCTACACGAGCTGAAGTATATAGGGTTGTTGACATCGCATTAACCAGTTGTGTTAAG
CTGTGAGCTAACATGTTTTTCTTGTCAATTGTCACATTGAAGCCAAGGACATCCAAGCAT
AACCCAACCTTTTGTCGATACTAGGATACTTATGAGAGATCTTGTGGACATTATTGCGAA
AAGAATTGT