Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d029868_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:1:91136217:91139357:1 gene:Zm00001d029868 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGAGATTTGGTTGCTTGTCCAATTAAGGTTGGTTTCTTGTTTATGGTTGTATAAGCCC
GTTGAGATGGAGGATCTGAAGAAGTTTTATCCTTCTTTCTGGAAGCAATCTAGCAGTTCA
CGAAGTAGCCTGCACTCGATCCGTGAGCATAAGCTGATGGATTTGGGTTCGAGGCGCAAT
CAAACCCAAGAAGTTTCCACCAATTTCAATAAACGCAAACCGTTCTCCGAATCTGTGGAA
CTGACTTCAGATGTTAGGACTTCAGTTTGGAGAAAATCCGATGCTTATCACGGAGTGATT
GACTTGGAGAAGCCATCGATTTCTGGTGATGCGATTGAAGCTATTGGTTGTTCTGGCTTT
GGCAACCCTGCCAACCAAAATGGCAAGTCTCAGGATGGTTCATGCTGTATTTCACCAGAG
AACACCTCACTTGCAGAGTCGCTTCAGTCGTGTAGAGACTGGAACATATCGCGTGTAAGC
GTTGGTTCAGTTGGATCTAGTGACACTCCGGATTGCCAGTCCCCTATCAAAACAAGTAAC
AATGAAGCAAGACATTCACTGTTTGACCTGAATGTTCCTCAAGAAGAAAGTCTTTTTATG
TCTTCTACTCTGGTTCCTTCTTCTTCAACGTATTGTGGAATTTTTTCAGACAACCGTAGA
GAAACTTCTGAGAAAGAGCATATCGCTGGTATCAGATCAATGAAAGGATCTTCCATCACT
GTGGTCACCCCCAACTCAGTTGCAGACAGTTCAAGGGATGTGGTAACTGAATCGCCAGTT
CAACCGAAGTTTCTTTTTGACCTTAATGTGTCACTTGAAAACACCGACATGCCATCAGAA
ATCTGTGATTATAGAGATAAGGATGTAAATAATGATGTAAGTAAAGGAACAGCACCCCGT
CGTTCTTTCTCCAATAAAGATAGTCTGCATGCAGAAACTTCCACAAAACATGCGGTTCTT
GGACATGATCATATGTTGGCGCACGAGGATGATAGTAAGGTGCTTCTCACATCCCCAACA
GCTAATGGTATCAATAAGGTTCAGTTGACACAGTCTGGAACCATTAACAAGGAGTTTTTG
ATCCCTGGATCTCCTCTTGTTGATACAAGTTTCCCTCCAAGACTTGAGATATCCGACAAT
GGAGCATCGAATATTCAAGAGTTAAGCATGCTTCAAGACAAGGTCGATGGTGATGGCACA
ACAGCTGATACTGCAGCTAGAACCCTTCTTTCCATTTTCCAGCATAGTTCTGAACGCATT
GCTCATTGCTTTGGAAGCAGCAACCAGACAGCAGCTCAGAACGTGAACGATGAGCCTCAG
CCTTCATTGGACTCGTTCGAGCAAACCGTGTTGAACTTAGAGGAGATCCAAGATGACGGT
CAATCGATCAATGTGGCACCACCCTATATCGAAGGACCAGCATGTCGGATCAAGCTAAAG
AGAGGGAGGGGTATGAGAAATTTTCAGAGGGAGATCATTCCTGGCCTCCTTCTAGGGAGG
CAAGAGATATGCGAGGACTTGGAAGTTATAGGCTATGCGCCAAAGAAAGCTCGGTCCAGG
AAACCCCGCAAGGGTCCAGGCGCATCCTCAGCTCAACCGAGGCCGTGCAAACGTGGAGCT
GTCAAGCGCTGA

Peptide Sequence

PEP ID

Zm00001d029868_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:1:91136217:91139357:1 gene:Zm00001d029868 transcript:Zm00001d029868_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MEIWLLVQLRLVSCLWLYKPVEMEDLKKFYPSFWKQSSSSRSSLHSIREHKLMDLGSRRN
QTQEVSTNFNKRKPFSESVELTSDVRTSVWRKSDAYHGVIDLEKPSISGDAIEAIGCSGF
GNPANQNGKSQDGSCCISPENTSLAESLQSCRDWNISRVSVGSVGSSDTPDCQSPIKTSN
NEARHSLFDLNVPQEESLFMSSTLVPSSSTYCGIFSDNRRETSEKEHIAGIRSMKGSSIT
VVTPNSVADSSRDVVTESPVQPKFLFDLNVSLENTDMPSEICDYRDKDVNNDVSKGTAPR
RSFSNKDSLHAETSTKHAVLGHDHMLAHEDDSKVLLTSPTANGINKVQLTQSGTINKEFL
IPGSPLVDTSFPPRLEISDNGASNIQELSMLQDKVDGDGTTADTAARTLLSIFQHSSERI
AHCFGSSNQTAAQNVNDEPQPSLDSFEQTVLNLEEIQDDGQSINVAPPYIEGPACRIKLK
RGRGMRNFQREIIPGLLLGRQEICEDLEVIGYAPKKARSRKPRKGPGASSAQPRPCKRGA
VKR

Transcript Sequence

Transcript ID

Zm00001d029868_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:91136217:91139357:1 gene:Zm00001d029868 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGCTAAAGGAGTGGTTGTTCTCCACGGGGACAACAGAAAAATGATATGGAGATTTGGTTG
CTTGTCCAATTAAGGTTGGTTTCTTGTTTATGGTTGTATAAGCCCGTTGAGATGGAGGAT
CTGAAGAAGTTTTATCCTTCTTTCTGGAAGCAATCTAGCAGTTCACGAAGTAGCCTGCAC
TCGATCCGTGAGCATAAGCTGATGGATTTGGGTTCGAGGCGCAATCAAACCCAAGAAGTT
TCCACCAATTTCAATAAACGCAAACCGTTCTCCGAATCTGTGGAACTGACTTCAGATGTT
AGGACTTCAGTTTGGAGAAAATCCGATGCTTATCACGGAGTGATTGACTTGGAGAAGCCA
TCGATTTCTGGTGATGCGATTGAAGCTATTGGTTGTTCTGGCTTTGGCAACCCTGCCAAC
CAAAATGGCAAGTCTCAGGATGGTTCATGCTGTATTTCACCAGAGAACACCTCACTTGCA
GAGTCGCTTCAGTCGTGTAGAGACTGGAACATATCGCGTGTAAGCGTTGGTTCAGTTGGA
TCTAGTGACACTCCGGATTGCCAGTCCCCTATCAAAACAAGTAACAATGAAGCAAGACAT
TCACTGTTTGACCTGAATGTTCCTCAAGAAGAAAGTCTTTTTATGTCTTCTACTCTGGTT
CCTTCTTCTTCAACGTATTGTGGAATTTTTTCAGACAACCGTAGAGAAACTTCTGAGAAA
GAGCATATCGCTGGTATCAGATCAATGAAAGGATCTTCCATCACTGTGGTCACCCCCAAC
TCAGTTGCAGACAGTTCAAGGGATGTGGTAACTGAATCGCCAGTTCAACCGAAGTTTCTT
TTTGACCTTAATGTGTCACTTGAAAACACCGACATGCCATCAGAAATCTGTGATTATAGA
GATAAGGATGTAAATAATGATGTAAGTAAAGGAACAGCACCCCGTCGTTCTTTCTCCAAT
AAAGATAGTCTGCATGCAGAAACTTCCACAAAACATGCGGTTCTTGGACATGATCATATG
TTGGCGCACGAGGATGATAGTAAGGTGCTTCTCACATCCCCAACAGCTAATGGTATCAAT
AAGGTTCAGTTGACACAGTCTGGAACCATTAACAAGGAGTTTTTGATCCCTGGATCTCCT
CTTGTTGATACAAGTTTCCCTCCAAGACTTGAGATATCCGACAATGGAGCATCGAATATT
CAAGAGTTAAGCATGCTTCAAGACAAGGTCGATGGTGATGGCACAACAGCTGATACTGCA
GCTAGAACCCTTCTTTCCATTTTCCAGCATAGTTCTGAACGCATTGCTCATTGCTTTGGA
AGCAGCAACCAGACAGCAGCTCAGAACGTGAACGATGAGCCTCAGCCTTCATTGGACTCG
TTCGAGCAAACCGTGTTGAACTTAGAGGAGATCCAAGATGACGGTCAATCGATCAATGTG
GCACCACCCTATATCGAAGGACCAGCATGTCGGATCAAGCTAAAGAGAGGGAGGGGTATG
AGAAATTTTCAGAGGGAGATCATTCCTGGCCTCCTTCTAGGGAGGCAAGAGATATGCGAG
GACTTGGAAGTTATAGGCTATGCGCCAAAGAAAGCTCGGTCCAGGAAACCCCGCAAGGGT
CCAGGCGCATCCTCAGCTCAACCGAGGCCGTGCAAACGTGGAGCTGTCAAGCGCTGACCA
GGAGCATCTGCATTCCGTGGCAGGGTGCCATAAGGCAGGCGATTCAGAACAGGAGAGTCC
ATTCTAAACCATGTGAATATTCGTGTGTATCAAGCCTAGCTTCAAACTCTGGTTTGCTGG
TGACCATTTAGTTGGGGATATTCTTTCCTTTCCCCTCTTGTTATAT